mRNA_H-akashiwo_Contig1013.9.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1013.9.1
Unique NamemRNA_H-akashiwo_Contig1013.9.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1013.9.1 vs. uniprot
Match: A0A7S4DD78_HETAK (Hypothetical protein n=4 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DD78_HETAK)

HSP 1 Score: 556 bits (1432), Expect = 2.970e-198
Identity = 266/310 (85.81%), Postives = 293/310 (94.52%), Query Frame = 1
Query:    1 ISGSSSALVSDFKQSLASKYDLTDQGKLTQILGIKVVRDKRSKCVFLSQASFIKDALSKFGLDYLPACKTPIGHTVDLTPSPGFKAELSDANLYRSMVGTLAWVANWTRPELDFAVHNVQRTQSNPEPKHFEAVERAFRYLKGTQSETLRLGGDLVLRAYSDADFCSDRIDGKSVTGYILFLGNAPIIWSSKLQGAVTTSTVEAEYLALRSSVKDVMWLRHLLADLGCPQQEPTPVVEDNSACIEWANDLVVSKKNRHFHVTYHLTKEQVSLGTIRMFFTKTHDQVADILTKALNAENFSRHQRVLHHGF 930
            ISGSS A+VS+FKQSLASKY LTDQG+LTQILGIKVVRDKR+KC  LSQ SFIKDAL+KFGLDYLPACKTP+ HTVDLTP+PGFKAELSDANLYRSMVGTLAWVANWTRPEL F VH +QRTQ NPEPKHFEAV+RAFRYLKGTQSE+LRLGGDLVLRA+SD+DFC+DR+DGKSVTGYILFLG+API+WSSKLQGAVTTSTVEAEYLALRS+VKD+MWLR LL ++GCPQ EPTPVVEDNSAC+EWAND++V+K+NRHFHV+YHL KEQVSLGTIRMF+ KTHDQVADILTKALNA NF RHQRVLHHGF
Sbjct:   42 ISGSSQAVVSEFKQSLASKYSLTDQGELTQILGIKVVRDKRNKCFHLSQTSFIKDALAKFGLDYLPACKTPLDHTVDLTPTPGFKAELSDANLYRSMVGTLAWVANWTRPELAFTVHKLQRTQINPEPKHFEAVQRAFRYLKGTQSESLRLGGDLVLRAFSDSDFCNDRVDGKSVTGYILFLGDAPIVWSSKLQGAVTTSTVEAEYLALRSAVKDIMWLRSLLEEMGCPQHEPTPVVEDNSACVEWANDMLVNKRNRHFHVSYHLAKEQVSLGTIRMFYIKTHDQVADILTKALNAANFERHQRVLHHGF 351          
BLAST of mRNA_H-akashiwo_Contig1013.9.1 vs. uniprot
Match: A0A7S3Y6S2_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y6S2_HETAK)

HSP 1 Score: 251 bits (641), Expect = 2.210e-79
Identity = 123/141 (87.23%), Postives = 132/141 (93.62%), Query Frame = 1
Query:    1 ISGSSSALVSDFKQSLASKYDLTDQGKLTQILGIKVVRDKRSKCVFLSQASFIKDALSKFGLDYLPACKTPIGHTVDLTPSPGFKAELSDANLYRSMVGTLAWVANWTRPELDFAVHNVQRTQSNPEPKHFEAVERAFRYL 423
            ISGSS A+VS+FKQSLASKY+LTDQG+LTQILGIKVVRDKR+KC  LSQ SFIKDAL+KFGLDYLPACKTPI HTVDLTP+PGFKAELSDANLYRSMVGTLAWVANWTRPEL F VH +QRTQ NPEPKHFEAV+RAFRYL
Sbjct:  128 ISGSSQAIVSEFKQSLASKYNLTDQGELTQILGIKVVRDKRNKCFHLSQTSFIKDALAKFGLDYLPACKTPIDHTVDLTPTPGFKAELSDANLYRSMVGTLAWVANWTRPELAFTVHKLQRTQINPEPKHFEAVQRAFRYL 268          
BLAST of mRNA_H-akashiwo_Contig1013.9.1 vs. uniprot
Match: A0A7S3Y1P1_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y1P1_HETAK)

HSP 1 Score: 250 bits (639), Expect = 2.190e-72
Identity = 131/310 (42.26%), Postives = 195/310 (62.90%), Query Frame = 1
Query:    1 ISGSSSALVSDFKQSLASKYDLTDQGKLTQILGIKVVRDKRSKCVFLSQASFIKDALSKFGLDYLPACKTPIGHTVDLTPSPGFKAELS--DANLYRSMVGTLAWVANWTRPELDFAVHNVQRTQSNPEPKHFEAVERAFRYLKGTQSETLRLGGDLVLRAYSDADFCSDRIDGKSVTGYILFLGNAPIIWSSKLQGAVTTSTVEAEYLALRSSVKDVMWLRHLLADLGCPQQEPTPVVEDNSACIEWANDLVVSKKNRHFHVTYHLTKEQVSLGTIRMFFTKTHDQVADILTKALNAEN-FSRHQRVLH 921
            ++ S  + +S  K++++  Y+++D G++  ILGIKV RD+ ++ + LSQ SFI++A  KF +        P+   +D+  +      LS  +A  +RS+VGT+ W+A WT PE+ +++H + +  ++P      A     RYL  T+ + + LGG L L AY+DADFCS+R  G+S +G+ +FLG +PIIWSS++Q  VT +T EAEY++LR++V DVMWL+ LL  LG  +Q   P+ EDN ACI WAND  VSK  RH HV+YH TKE V    I + +  T  Q+AD+ TK L+  N F +  RVLH
Sbjct:  687 LASSDKSELSRIKKAISLGYNVSDMGEIESILGIKVQRDRTARTITLSQHSFIEEACEKFQVRSYEPVTNPVNKGIDVNINTDTSRRLSTFEAKKFRSLVGTVNWLALWTFPEVAYSIHTLSKRFTSPSANCLAASYHLLRYLWWTEDKGVTLGGPLNLTAYADADFCSERHKGRSRSGFAIFLGFSPIIWSSRMQHCVTRNTTEAEYVSLRNAVTDVMWLKRLLESLGY-KQGCVPIYEDNKACITWANDETVSKSARHIHVSYHYTKEMVQSKEIEVKYVDTKHQIADVFTKPLDFNNGFKKFSRVLH 995          
BLAST of mRNA_H-akashiwo_Contig1013.9.1 vs. uniprot
Match: A0A151UDQ7_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151UDQ7_CAJCA)

HSP 1 Score: 190 bits (483), Expect = 3.760e-53
Identity = 113/301 (37.54%), Postives = 168/301 (55.81%), Query Frame = 1
Query:    1 ISGSSSALVSDFKQSLASKYDLTDQGKLTQILGIKVVRDKRSKCVFLSQASFIKDALSKFGLDYLPACKTPIGHTVDLTPSPGFKAELSDANLYRSMVGTLAWVANWTRPELDFAVHNVQRTQSNPEPKHFEAVERAFRYLKGTQSETLRLGGD--LVLRAYSDADFCSDRIDGKSVTGYILFLGNAPIIWSSKLQGAVTTSTVEAEYLALRSSVKDVMWLRHLLADLGCPQQEPTPVVEDNSACIEWANDLVVSKKNRHFHVTYHLTKEQVSLGTIRMFFTKTHDQVADILTKALNAENF 897
            I+G  S  +S+ KQ L   +++ D G L+  LGI+++       +FLSQA +  D +S+ GL       TP+      TP  G    L D  LYR +VG+L ++   TR  + + VH V +    P   HF AV R   Y+KGT    L    D  L+LRAY DAD+  D  D +SVTG+ +FLG++ I W SK Q  V  S+ EAEY A+  +  +++W+R LL DLG PQ  PT +  DN + I+ A++ V  ++ +H  +  H+T++QV  GT+ +    T DQ A++LTKA +  +F
Sbjct:  182 ITGDDSNGISELKQFLNLHFEMKDLGSLSYFLGIQILSCDDG--LFLSQAKYASDLISRAGLTDCKTESTPLETRAHFTPLDG--TPLEDPTLYRQLVGSLIYLTV-TRTNIAYVVHLVSQFMCAPRSTHFAAVLRIIIYIKGTIFHGLHYSVDSPLILRAYLDADWGGDPTDRRSVTGFCIFLGDSLISWRSKKQQLVARSSTEAEYRAMADTTSEIVWIRWLLGDLGFPQSSPTDLFCDNRSAIQIAHNDVFHERTKHIEIDCHITRQQVVRGTLHLISISTIDQPANLLTKAHHPGHF 477          
BLAST of mRNA_H-akashiwo_Contig1013.9.1 vs. uniprot
Match: UPI000901F676 (uncharacterized protein LOC109128812 n=1 Tax=Camelina sativa TaxID=90675 RepID=UPI000901F676)

HSP 1 Score: 185 bits (469), Expect = 8.190e-53
Identity = 100/307 (32.57%), Postives = 177/307 (57.65%), Query Frame = 1
Query:    7 GSSSALVSDFKQSLASKYDLTDQGKLTQILGIKVVRDKRSKCVFLSQASFIKDALSKFGLDYLPACKTPIGHTVDLTPSPGFKAELSDAN------LYRSMVGTLAWVANWTRPELDFAVHNVQRTQSNPEPKHFEAVERAFRYLKGTQSETL--RLGGDLVLRAYSDADFCSDRIDGKSVTGYILFLGNAPIIWSSKLQGAVTTSTVEAEYLALRSSVKDVMWLRHLLADLGCPQQEPTPVVEDNSACIEWANDLVVSKKNRHFHVTYHLTKEQVSLGTIRMFFTKTHDQVADILTKALNAENFSR 903
            G+S+ ++ +FK S+ S++ +TD GK+   LG++VV+D++   +F+SQ  + ++ L K+G++   A K P+         PG K     A        ++ +V +L ++   TRP+L ++V+ V R    P  +H    +R  RY++GT+   +  + GG+  L  Y D+D+  D  D KS   Y+  LG   + W SK Q  VT ST EAE++++       +WLR+++A++G  Q+E T +  DNS+ I+ + + V+  +++H HV +H  +E V+ G I++ +  THDQ++DI+TKA+  E F +
Sbjct:   17 GNSTVMLEEFKVSMMSEFSMTDLGKMKYFLGVEVVQDEKG--IFISQKKYAEETLRKYGMEECNAVKNPM--------VPGNKLSREGAGEEVNPTTFKQLVRSLRYLTA-TRPDLIYSVNLVSRYMERPNEQHMATAKRILRYVQGTRDFGIQYKYGGEQKLVGYVDSDYAGDVDDFKSTFEYVFMLGGGAVSWVSKKQPIVTLSTTEAEFVSVAYGACHAVWLRNIMAEIGSEQKEGTTMFCDNSSAIKLSKNPVLHGRSKHIHVRFHYLRELVNDGVIQLDYCSTHDQISDIMTKAVKLEAFEK 312          
BLAST of mRNA_H-akashiwo_Contig1013.9.1 vs. uniprot
Match: A0A251SEE8_HELAN (Putative reverse transcriptase, RNA-dependent DNA polymerase n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251SEE8_HELAN)

HSP 1 Score: 189 bits (481), Expect = 9.400e-53
Identity = 106/303 (34.98%), Postives = 171/303 (56.44%), Query Frame = 1
Query:    1 ISGSSSALVSDFKQSLASKYDLTDQGKLTQILGIKVVRDKRSKCVFLSQASFIKDALSKFGLDYLPACKTPIGHTVDLTPSPGFKAELSDANLYRSMVGTLAWVANWTRPELDFAVHNVQRTQSNPEPKHFEAVERAFRYLKGT--QSETLRLGGDLVLRAYSDADFCSDRIDGKSVTGYILFLGNAPIIWSSKLQGAVTTSTVEAEYLALRSSVKDVMWLRHLLADLGCPQQEPTPVVEDNSACIEWANDLVVSKKNRHFHVTYHLTKEQVSLGTIRMFFTKTHDQVADILTKALNAENFSR 903
            I+ +S  L+S+FK  +  ++++TD GKL   LG++V  +  +  + LSQ  ++K+ L K+ +       TP+ + + L+       E  + ++YRS+VG+L ++ N TRP++ FAV  + R    P+  H+EA +R  +Y+KGT  Q  T   GG   L  +S++D+  +  D KS +GYI  LG+ PI W SK Q  V  S+ EAEY+AL  +    +WL+ +L +L      P P+  DN + I  A D V   K++H  V YH  ++ +    + + F  T DQ+ADI+TKAL  ++F R
Sbjct:   60 IASNSMKLISEFKDEMKKEFEMTDMGKLHYFLGMEVSYEDGN--IILSQKKYMKNLLEKYRMSQCNTVSTPMDYGIKLSKDD--PEEFINESMYRSLVGSLMYLTN-TRPDIMFAVSKISRFMEAPKRSHWEAAKRILKYVKGTLDQGITYSKGGKQKLIGFSNSDYAGNVDDSKSTSGYIFHLGSGPISWQSKKQKVVALSSTEAEYMALTLAGCQAIWLKGILDELQGKDNYPIPIYCDNKSTICLAKDSVYHGKSKHIRVKYHFIRDLIRREDVTILFCATKDQLADIMTKALQPKDFLR 357          
BLAST of mRNA_H-akashiwo_Contig1013.9.1 vs. uniprot
Match: A0A6A3GI70_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=9 Tax=Phytophthora TaxID=4783 RepID=A0A6A3GI70_9STRA)

HSP 1 Score: 184 bits (467), Expect = 1.630e-52
Identity = 100/297 (33.67%), Postives = 165/297 (55.56%), Query Frame = 1
Query:   19 ALVSDFKQSLASKYDLTDQGKLTQILGIKVVRDKRSKCVFLSQASFIKDALSKFGLDYLPACKTPIGHTVDLTPSPGFKAELSDANL----YRSMVGTLAWVANWTRPELDFAVHNVQRTQSNPEPKHFEAVERAFRYLKGTQSETLRLGGDL--VLRAYSDADFCSDRIDGKSVTGYILFLGNAPIIWSSKLQGAVTTSTVEAEYLALRSSVKDVMWLRHLLADLGCPQQEPTPVVEDNSACIEWANDLVVSKKNRHFHVTYHLTKEQVSLGTIRMFFTKTHDQVADILTKALNAE 891
            A+++  K  +A K+ + D G+   ILGI++  D   + + +S  ++ +  + KFG +    C TP+   V LT +   + E   A +    YRS+VG+L ++A  TRP++  AV  + R   NP  KH++A  +  RYL  T+   +   G L   L AYSDAD+  +R D +SV+G +L L  AP++W S  Q  V  S+ EAEY+AL   VK+ +W+R LL D+G  Q   T + EDN   +  A ++    + +H  + YH  +E+V    + + +  T++Q+AD +TK L+++
Sbjct:    9 AVIASVKAGIAEKFRIKDMGRARFILGIEIDYDMERRTLGISHKAYTESIIKKFGQENAKPCLTPLEPGVQLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGLLGTQLEAYSDADWAGNRDDRRSVSGMLLMLCGAPVVWRSTFQKTVALSSTEAEYMALSDCVKECVWMRRLLKDIGAEQVGATVIYEDNQGAMALAKNVGYQARTKHIDIRYHFIREKVVSDEVELQYVDTNNQLADFMTKCLSSK 305          
BLAST of mRNA_H-akashiwo_Contig1013.9.1 vs. uniprot
Match: A0A6A4DK21_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A4DK21_9STRA)

HSP 1 Score: 184 bits (466), Expect = 1.950e-52
Identity = 106/302 (35.10%), Postives = 164/302 (54.30%), Query Frame = 1
Query:   19 ALVSDFKQSLASKYDLTDQGKLTQILGIKVVRDKRSKCVFLSQASFIKDALSKFGLDYLPACKTPIGHTVDLTPS--PGFKAELS--DANLYRSMVGTLAWVANWTRPELDFAVHNVQRTQSNPEPKHFEAVERAFRYLKGTQSETLRLGGDLV--LRAYSDADFCSDRIDGKSVTGYILFLGNAPIIWSSKLQGAVTTSTVEAEYLALRSSVKDVMWLRHLLADLGCPQQEPTPVVEDNSACIEWANDLVVSKKNRHFHVTYHLTKEQVSLGTIRMFFTKTHDQVADILTKALNAENFSRH 906
            A ++  K  +   + L D G +  ILGI+V  D   K + L Q  +I D + +F         TPI  ++ +T    P  +AE++      +RS++G+L+++A  TRP++  AV  + R   NP  +H++A  +  RYLKGT++  +   G +   L AYSDAD+ SDR D +SV+G +L L +AP++W +  Q  V  ST E EY+AL   VK+ MW R LL +LG  Q+  T + EDN   I  A +     + +H  + YH  +E++  G I + +  T +QVAD LTK L  +    H
Sbjct:    2 ATINTVKDKIRHSFKLKDLGAVRYILGIEVHHDIADKTLMLRQPRYIDDLVQRFNQTEAHPSVTPIDLSLPVTKEDQPETQAEMTIMRGKPFRSIIGSLSYLAGSTRPDIAVAVSRLSRYLENPGIRHWDAAIKIVRYLKGTRNYGVHFDGKMPPELIAYSDADWGSDRDDRRSVSGTVLMLFSAPVVWKTGFQKTVALSTTETEYMALTMCVKECMWARLLLKNLGLKQEGATTIHEDNQGAIALARNTGYQSRTKHISIRYHYLRERIIAGDIELKYINTKEQVADFLTKGLPKKTLLDH 303          
BLAST of mRNA_H-akashiwo_Contig1013.9.1 vs. uniprot
Match: A0A2P4YNT8_9STRA (Integrase catalytic core protein (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YNT8_9STRA)

HSP 1 Score: 186 bits (472), Expect = 2.520e-52
Identity = 109/299 (36.45%), Postives = 172/299 (57.53%), Query Frame = 1
Query:    1 ISGSSSALVSDFKQSLASKYDLTDQGKLTQILGIKVVRDKRSKCVFLSQASFIKDALSKFGLDYLPACKTPIGHTVDLTPSPGFKAELSDANLYRSMVGTLAWVANWTRPELDFAVHNVQRTQSNPEPKHFEAVERAFRYLKGTQSETLRLGG--DLVLRAYSDADFCSDRIDGKSVTGYILFLGNAPIIWSSKLQGAVTTSTVEAEYLALRSSVKDVMWLRHLLADLGCPQQEPTP---VVEDNSACIEWANDLVVSKKNRHFHVTYHLTKEQVSLGTIRMFFTKTHDQVADILTKAL 882
            ++GSSS ++++ K+ L +++++TD GK + ILGI+VV D     V LSQA +I D L +FG+       +P+  ++ L  S    +   DA  +R  VG L  +   TRP++ FAV  V R   NP+ +H+ AV+R FRYL+GT+S  LR      +  R YSDAD+  D  D KS +GY+  +   P+ W SK Q +V+ ST EAEY+AL  ++++  W+  LL ++     E  P   + EDN +CI+   + V   + +H  + YH  +++V  G + + + +T   +ADILTK L
Sbjct:   96 VTGSSSMMIAEVKKQLKARFEMTDSGKCSFILGIEVV-DNADGSVTLSQARYINDILERFGMQNCKPAASPVDLSMKLVASD--VSTKLDAP-FREAVGALMHLMTSTRPDIAFAVGYVSRFMENPQVEHWIAVKRIFRYLQGTKSHGLRFSPAKGIDFRGYSDADWAGDHSDRKSTSGYLFQVLGGPVSWGSKKQSSVSLSTSEAEYIALSLAIQEGKWVHKLLCEILDAAGEDIPDLKIFEDNQSCIKMTKNPVNHGRAKHIDIKYHHIRDEVKRGEVIVEYCETTTMLADILTKGL 390          
BLAST of mRNA_H-akashiwo_Contig1013.9.1 vs. uniprot
Match: UPI0010A9FE07 (uncharacterized protein LOC114820955 n=1 Tax=Malus domestica TaxID=3750 RepID=UPI0010A9FE07)

HSP 1 Score: 184 bits (467), Expect = 2.760e-52
Identity = 108/304 (35.53%), Postives = 175/304 (57.57%), Query Frame = 1
Query:    1 ISGSSSALVSDFKQSLASKYDLTDQGKLTQILGIKVVRDKRSKCVFLSQASFIKDALSKFGLDYLPACKTPIGHTVDLTPSPGFKAELSDANLYRSMVGTLAWVANWTRPELDFAVHNVQRTQSNPEPKHFEAVERAFRYLKGTQSETL--RLGGDLVLRAYSDADFCSDRIDGKSVTGYILFLGNAPIIWSSKLQGAVTTSTVEAEYLALRSSVKDVMWLRHLLADLGCPQQEPTPVVEDNSACIEWANDLVVSKKNRHFHVTYHLTKEQVSLGTIRMFFTKTHDQVADILTKALNAENFSRH 906
            ++GSSS  V +  Q L++ +DL D G+LT  LG+++ + K +  +F+ QA +IKD + K G+D      TP      L  S G  + L+D + YRS+VG+L ++  +TRP++ FAV+ V +  ++    HF  V+R  RYL+GT    +         L A+SD+D+ +     +SVTGY+++LG  PI W SK Q +V+ S+ EAEY AL  +  D+ W+R +L DL C   +P  +  DN + I  +++ V   + +H    YH  +E+V    + + +  T +Q ADILTK L++ +F +H
Sbjct:   33 LTGSSSVKVQNVVQELSTVFDLKDLGRLTYFLGLQI-QYKSNGDIFVHQAKYIKDLIHKSGMDSCKPAATPCKPHSQLLCSEG--SLLADPSTYRSVVGSLQYLT-FTRPDIAFAVNTVCQYMNSLTEIHFGDVKRILRYLQGTLHTGIVYSAASHPTLTAFSDSDWAAYLNTRRSVTGYVVYLGENPISWQSKKQTSVSRSSTEAEYKALAHTAADIAWVRQILRDLKCSVPQPPIIHCDNMSAIALSSNPVFHSRIKHLDTDYHFVRERVQRRDLEVLYIPTEEQTADILTKGLHSLSFLKH 332          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1013.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4DD78_HETAK2.970e-19885.81Hypothetical protein n=4 Tax=Heterosigma akashiwo ... [more]
A0A7S3Y6S2_HETAK2.210e-7987.23Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
A0A7S3Y1P1_HETAK2.190e-7242.26Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A151UDQ7_CAJCA3.760e-5337.54Retrovirus-related Pol polyprotein from transposon... [more]
UPI000901F6768.190e-5332.57uncharacterized protein LOC109128812 n=1 Tax=Camel... [more]
A0A251SEE8_HELAN9.400e-5334.98Putative reverse transcriptase, RNA-dependent DNA ... [more]
A0A6A3GI70_9STRA1.630e-5233.67Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6A4DK21_9STRA1.950e-5235.10Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2P4YNT8_9STRA2.520e-5236.45Integrase catalytic core protein (Fragment) n=1 Ta... [more]
UPI0010A9FE072.760e-5235.53uncharacterized protein LOC114820955 n=1 Tax=Malus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1013contigH-akashiwo_Contig1013:370521..371459 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog164328.Phyra75833
Model size939
Max annot lvl164328.Phyra75833|-
Hectar predicted targeting categoryother localisation
Exons1
Evalue7.52e-51
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,3Q8Z1@4776|Peronosporales
Descriptiontransposition, RNA-mediated
Cds size939
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387051.4133468-CDS-H-akashiwo_Contig1013:370520..3714591681387051.4133468-CDS-H-akashiwo_Contig1013:370520..371459Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1013 370521..371459 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1013.9.1prot_H-akashiwo_Contig1013.9.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1013 370521..371459 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1013.9.1

>prot_H-akashiwo_Contig1013.9.1 ID=prot_H-akashiwo_Contig1013.9.1|Name=mRNA_H-akashiwo_Contig1013.9.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=313bp
ISGSSSALVSDFKQSLASKYDLTDQGKLTQILGIKVVRDKRSKCVFLSQA
SFIKDALSKFGLDYLPACKTPIGHTVDLTPSPGFKAELSDANLYRSMVGT
LAWVANWTRPELDFAVHNVQRTQSNPEPKHFEAVERAFRYLKGTQSETLR
LGGDLVLRAYSDADFCSDRIDGKSVTGYILFLGNAPIIWSSKLQGAVTTS
TVEAEYLALRSSVKDVMWLRHLLADLGCPQQEPTPVVEDNSACIEWANDL
VVSKKNRHFHVTYHLTKEQVSLGTIRMFFTKTHDQVADILTKALNAENFS
RHQRVLHHGFSA*
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mRNA from alignment at H-akashiwo_Contig1013:370521..371459-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1013.9.1 ID=mRNA_H-akashiwo_Contig1013.9.1|Name=mRNA_H-akashiwo_Contig1013.9.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=939bp|location=Sequence derived from alignment at H-akashiwo_Contig1013:370521..371459- (Heterosigma akashiwo CCMP452)
ATTAGTGGCAGCTCTTCTGCTCTTGTCTCGGATTTCAAGCAGTCTCTTGC CTCAAAGTATGATCTCACTGATCAGGGGAAGCTGACTCAGATTCTGGGTA TCAAGGTTGTTCGTGACAAACGCAGCAAATGTGTCTTTCTCTCTCAAGCC TCTTTTATCAAGGATGCTCTCTCCAAGTTCGGACTTGACTATCTGCCTGC GTGCAAGACTCCGATTGGTCACACCGTTGATCTCACACCTTCCCCTGGCT TCAAGGCTGAACTCTCCGACGCAAACCTGTACAGGTCCATGGTTGGCACG CTGGCCTGGGTTGCGAACTGGACCAGACCGGAGCTGGATTTTGCGGTTCA TAATGTCCAGCGCACTCAAAGTAATCCGGAGCCCAAGCATTTTGAAGCAG TCGAGCGTGCGTTTCGTTATCTAAAGGGCACTCAGTCTGAGACGTTGCGG CTTGGTGGTGATCTTGTGCTACGTGCATACTCTGATGCAGATTTTTGCTC TGACCGTATTGATGGTAAGTCTGTGACGGGCTATATTCTTTTTCTGGGTA ATGCGCCTATCATTTGGTCCTCCAAGCTTCAAGGGGCGGTCACTACCTCT ACTGTGGAGGCAGAATATCTTGCTCTTCGATCCTCTGTCAAGGATGTCAT GTGGCTCAGGCATCTTCTTGCTGATCTTGGGTGTCCCCAGCAGGAGCCTA CGCCTGTAGTAGAAGACAACAGTGCCTGTATTGAGTGGGCAAATGACTTG GTGGTCTCAAAGAAAAATAGACATTTTCATGTAACCTATCATCTTACTAA AGAGCAGGTGAGCCTTGGGACTATCAGGATGTTCTTCACTAAAACTCATG ACCAAGTGGCTGATATTCTTACAAAGGCACTCAATGCTGAGAATTTCTCA AGACACCAAAGGGTGCTGCATCATGGTTTCAGTGCCTGA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1013:370521..371459-

>mRNA_H-akashiwo_Contig1013.9.1 ID=mRNA_H-akashiwo_Contig1013.9.1|Name=mRNA_H-akashiwo_Contig1013.9.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=939bp|location=Sequence derived from alignment at H-akashiwo_Contig1013:370521..371459- (Heterosigma akashiwo CCMP452)
ATTAGTGGCAGCTCTTCTGCTCTTGTCTCGGATTTCAAGCAGTCTCTTGC
CTCAAAGTATGATCTCACTGATCAGGGGAAGCTGACTCAGATTCTGGGTA
TCAAGGTTGTTCGTGACAAACGCAGCAAATGTGTCTTTCTCTCTCAAGCC
TCTTTTATCAAGGATGCTCTCTCCAAGTTCGGACTTGACTATCTGCCTGC
GTGCAAGACTCCGATTGGTCACACCGTTGATCTCACACCTTCCCCTGGCT
TCAAGGCTGAACTCTCCGACGCAAACCTGTACAGGTCCATGGTTGGCACG
CTGGCCTGGGTTGCGAACTGGACCAGACCGGAGCTGGATTTTGCGGTTCA
TAATGTCCAGCGCACTCAAAGTAATCCGGAGCCCAAGCATTTTGAAGCAG
TCGAGCGTGCGTTTCGTTATCTAAAGGGCACTCAGTCTGAGACGTTGCGG
CTTGGTGGTGATCTTGTGCTACGTGCATACTCTGATGCAGATTTTTGCTC
TGACCGTATTGATGGTAAGTCTGTGACGGGCTATATTCTTTTTCTGGGTA
ATGCGCCTATCATTTGGTCCTCCAAGCTTCAAGGGGCGGTCACTACCTCT
ACTGTGGAGGCAGAATATCTTGCTCTTCGATCCTCTGTCAAGGATGTCAT
GTGGCTCAGGCATCTTCTTGCTGATCTTGGGTGTCCCCAGCAGGAGCCTA
CGCCTGTAGTAGAAGACAACAGTGCCTGTATTGAGTGGGCAAATGACTTG
GTGGTCTCAAAGAAAAATAGACATTTTCATGTAACCTATCATCTTACTAA
AGAGCAGGTGAGCCTTGGGACTATCAGGATGTTCTTCACTAAAACTCATG
ACCAAGTGGCTGATATTCTTACAAAGGCACTCAATGCTGAGAATTTCTCA
AGACACCAAAGGGTGCTGCATCATGGTTTCAGTGCCTGA
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