mRNA_H-akashiwo_Contig1013.2.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1013.2.1
Unique NamemRNA_H-akashiwo_Contig1013.2.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1013.2.1 vs. uniprot
Match: A0A836CIU2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIU2_9STRA)

HSP 1 Score: 214 bits (544), Expect = 1.110e-66
Identity = 102/176 (57.95%), Postives = 131/176 (74.43%), Query Frame = 1
Query:   19 SDSVKSKFGLASTWGVVCVLSVLYNAIKRLSPVAFEVFGSTKTLSPVFWASYASFVAFMAYTEGYKAFQKKFSPLVVKRALTLDEKLTPMRAVFAGPYCMGMFHATKARKIVSWSITIGVFGLVQVVKRLPFPYRSLVDAGVVAGLSWGGTSILCYYVRSLFGTPPSIDPALPKAE 546
            S S +S FGLAS WGV+ VL++L NA+KRL+P+A + F S   L+   W  Y  F   MAY EGYKAFQKKFSP+VV+RALTLD+   P+R V AGPY MG+FHA++ RKIVSW+++  V GLVQ V++LP+P+RS++D GVVAGLSWG  +I+ Y+VRS FGT P +D  LP  E
Sbjct:   89 STSGRSSFGLASAWGVLSVLAILGNAVKRLAPIAMQPFKSGD-LTRAHWGMYVGFAVLMAYAEGYKAFQKKFSPMVVQRALTLDKSAGPLRLVLAGPYSMGLFHASRKRKIVSWTLSFAVLGLVQAVRKLPYPWRSIIDGGVVAGLSWGSGAIVYYWVRSWFGTDPGVDAQLPLEE 263          
BLAST of mRNA_H-akashiwo_Contig1013.2.1 vs. uniprot
Match: A0A835ZF77_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF77_9STRA)

HSP 1 Score: 208 bits (530), Expect = 4.200e-65
Identity = 102/181 (56.35%), Postives = 136/181 (75.14%), Query Frame = 1
Query:   19 SDSVKSKFGLASTWGVVCVLSVLYNAIKRLSPVAFEVFGSTKTLSPVFWASYASFVAFMAYTEGYKAFQKKFSPLVVKRALTLDEKLT---PMRAVFAGPYCMGMFHATKARKIVSWSITIGVFGLVQVVKRLPFPYRSLVDAGVVAGLSWGGTSILCYYVRSLFGTPPSIDPALPKAEEK 552
            S   +S FG AS WGV+ VLS+L  A++RL P+A + F     LS   WA Y SFVA MAY EG+KAFQKKFSP+VV+RALTLD+  T   P+R + AGPYCMG+F+AT+ RKIVSW++ I V  LV VV++LP+P+RS++DAGVVAGLSWG ++IL ++VRS FG  P +D  +P+++E+
Sbjct:   40 SAPARSSFGFASAWGVLSVLSILAGALRRLVPIALQPF-KAGDLSYGHWALYMSFVALMAYVEGHKAFQKKFSPMVVQRALTLDQARTSFGPLRIILAGPYCMGLFYATRKRKIVSWTLYISVIALVTVVRQLPYPWRSIIDAGVVAGLSWGASAILYFWVRSWFGRAPGVDAQMPESKEE 219          
BLAST of mRNA_H-akashiwo_Contig1013.2.1 vs. uniprot
Match: W7TVP9_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TVP9_9STRA)

HSP 1 Score: 200 bits (508), Expect = 5.770e-61
Identity = 102/178 (57.30%), Postives = 124/178 (69.66%), Query Frame = 1
Query:   25 SVKSKFGLASTWGVVCVLSVLYNAIKRLSPVAFEVFGSTKT---LSPVFWASYASFVAFMAYTEGYKAFQKKFSPLVVKRALTLDEKLTPMRAVFAGPYCMGMFHATKARKIVSWSITIGVFGLVQVVKRLPFPYRSLVDAGVVAGLSWGGTSILCYYVRSLFGTPPSIDPALPKAEE 549
            S K  F L++ WGVV V+++L NAI+RL P+A E F  T T    +P+ WA Y  F   MAY EGYK FQ KFSPLVVKRALTL  +   +  V A PY MG+FHA+K R+IVSW+I +GV GLV+ VK L FPYRS+VDAGVVAGLSWG  SI   Y ++L G  PSIDPALP  ++
Sbjct:  111 SQKQSFSLSALWGVVGVVAMLSNAIRRLLPIALEPFKKTATPTAFTPLHWAQYVGFALIMAYAEGYKGFQLKFSPLVVKRALTLGPRSPLLHKVLAAPYSMGLFHASKKRQIVSWTIALGVIGLVKAVKTLAFPYRSIVDAGVVAGLSWGALSIAGIYAQALRGHVPSIDPALPDVKK 288          
BLAST of mRNA_H-akashiwo_Contig1013.2.1 vs. uniprot
Match: A0A8J6CDI7_DIALT (Uncharacterized protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CDI7_DIALT)

HSP 1 Score: 179 bits (453), Expect = 1.430e-53
Identity = 94/177 (53.11%), Postives = 127/177 (71.75%), Query Frame = 1
Query:   16 GSDSVKSKFGLASTWGVVCVLSVLYNAIKRLSPVAFEVFGSTKTLSPVFWASYASFVAFMAYTEGYKAFQKKFSPLVVKRALTLDE---KLTPMRAVFAGPYCMGMFHATKARKIVSWSITIGVFGLVQVVKRLPFPYRSLVDAGVVAGLSWGGTSILCYYVRSLFGTPPSIDPALP 537
            G+ +V  +   AS WGVV V+++L NAI RL+P+A E F     L+P+ WASYA+ +A  AY EGYKAFQ KFSPLVV RA TL     + T +R+V A  Y MG+FHAT+ RK++SW+I++ V  +V VVKRLP+P+RS+VDAGVVAGL+WG TSI   YV+++ G+ P++   LP
Sbjct:   41 GASTVPMRPSAASHWGVVGVMAILANAIGRLAPIAAEPF-RYGGLAPLHWASYAATIAAFAYVEGYKAFQLKFSPLVVSRAFTLGPQGGRATALRSVLAPFYSMGLFHATRKRKVISWTISLAVIVIVGVVKRLPYPWRSIVDAGVVAGLTWGVTSIGWIYVKAIGGSLPNVSTELP 216          
BLAST of mRNA_H-akashiwo_Contig1013.2.1 vs. uniprot
Match: A0A0M0JX49_9EUKA (Uncharacterized protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JX49_9EUKA)

HSP 1 Score: 178 bits (452), Expect = 2.210e-53
Identity = 87/171 (50.88%), Postives = 117/171 (68.42%), Query Frame = 1
Query:   31 KSKFGLASTWGVVCVLSVLYNAIKRLSPVAFEVFGSTKTLSPVFWASYASFVAFMAYTEGYKAFQKKFSPLVVKRALTLDEKLTPMRAVFAGPYCMGMFHATKARKIVSWSITIGVFGLVQVVKRLPFPYRSLVDAGVVAGLSWGGTSILCYYVRSLFGTPPSIDPALPKA 543
            ++  G+A  WGV   L +L +AIKRL+P+A + F   + LS + W  Y   +   AY EGY AFQKKFSPLVV+RA+TL +  +P+    A  Y MG+ HATK RKIVSWS+++ V  +V +VKRLP+P+RS+VDAGV  GL+WG  SI+  Y R+L GTPP +DP LP +
Sbjct:   51 RNAHGIAVAWGVCGFLGILASAIKRLAPIAMQPF-LQRDLSWLQWGFYGGSMGIFAYVEGYGAFQKKFSPLVVERAMTLKQSTSPVHIALAPFYSMGLMHATKKRKIVSWSVSMSVAMVVGIVKRLPYPWRSIVDAGVCTGLAWGAVSIVIIYARALAGTPPGVDPCLPSS 220          
BLAST of mRNA_H-akashiwo_Contig1013.2.1 vs. uniprot
Match: A0A7R9U4X8_9STRA (Hypothetical protein n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U4X8_9STRA)

HSP 1 Score: 179 bits (455), Expect = 3.510e-53
Identity = 93/182 (51.10%), Postives = 116/182 (63.74%), Query Frame = 1
Query:   13 GGSDSVKSKFG---LASTWGVVCVLSVLYNAIKRLSPVAFEVFGSTKTLSPVFWASYASFVAFMAYTEGYKAFQKKFSPLVVKRALTLDEKLTPMRAVFAGPYCMGMFHATKARKIVSWSITIGVFGLVQVVKRLPFPYRSLVDAGVVAGLSWGGTSILCYYVRSLFGTPPSIDPALPKAEE 549
            GG+ S  S  G   +A+TWGV+ V  VL N ++RL P+A E F          WA+YA F  FMAY EG K FQKKF P VV+RA  L     P+  +FA  +CMG+FHA+K RKI+SWS+ IGVFG++QV KRL +P+ ++VDAG V GL WG  S+   YVRSLFG  PSI   LP   E
Sbjct:   91 GGASSEASAVGYGGVAATWGVLGVFYVLLNGLRRLVPIAVEPF-QRGDFGLGLWAAYAGFAVFMAYAEGVKGFQKKFCPFVVRRAQLLKGSTNPLHCIFAPFFCMGLFHASKKRKILSWSLLIGVFGIIQVAKRLAYPWNAIVDAGAVVGLGWGCISLGATYVRSLFGQVPSISAELPSETE 271          
BLAST of mRNA_H-akashiwo_Contig1013.2.1 vs. uniprot
Match: A0A7S2WJT5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WJT5_9STRA)

HSP 1 Score: 176 bits (446), Expect = 1.990e-51
Identity = 92/175 (52.57%), Postives = 114/175 (65.14%), Query Frame = 1
Query:   46 LASTWGVVCVLSVLYNAIKRLSPVAFEVFGSTKTLSPVFWASYASFVAFMAYTEGYKAFQKKFSPLVVKRALTLDEKLTP-----MRAVFAGPYCMGMFHATKARKIVSWSITIGVFGLVQVVKRLPFPYRSLVDAGVVAGLSWGGTSILCYYVRSLF-GTPPSIDPALPKAEEK 552
            +ASTWG + V+ +L N IKRL PVA + F S   LS + W +YA +  FM YTEGYKAFQ KF PLVV RA TL+ +        +RA  A  Y MG+FHA+K R IVSWS  IG+  +V  VKRLP+P+RS++D GVV GLSWG  SI   Y+R +F G  P +DP LP  E K
Sbjct:  125 IASTWGALGVMYILANPIKRLLPVALQPFASPGDLSAMHWVAYALWCVFMGYTEGYKAFQLKFCPLVVSRAATLERQDCRGPGWWLRAALAPLYSMGLFHASKKRLIVSWSFVIGISAIVATVKRLPYPWRSIIDGGVVFGLSWGAASIAYLYLRKIFTGQIPEVDPQLPVKEPK 299          
BLAST of mRNA_H-akashiwo_Contig1013.2.1 vs. uniprot
Match: A0A7S3SW48_EMIHU (Hypothetical protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3SW48_EMIHU)

HSP 1 Score: 172 bits (435), Expect = 1.530e-50
Identity = 88/172 (51.16%), Postives = 118/172 (68.60%), Query Frame = 1
Query:   43 GLASTWGVVCVLSVLYNAIKRLSPVAFEVFGSTKTLSPVFWASYASFVAFMAYTEGYKAFQKKFSPLVVKRALTLDEKLTP---MRAVFAGPYCMGMFHATKARKIVSWSITIGVFGLVQVVKRLPFPYRSLVDAGVVAGLSWGGTSILCYYVRSLFGTPPSIDPALPKAEE 549
            GL + WGV   L +L  AI RL+P+A +     + ++ + W  Y   +AF AYTEGYKAFQ KFSPLVV+RA+TL  +  P   + +V A  Y MG+FHA+K RK VSWSI++GV  ++ +VKRLP+P+RS+VDAGV  GL WGGTSI   Y+R+L G  P +DP LPK ++
Sbjct:   72 GLRTAWGVCGFLGILAQAIGRLAPIAMQPI-LQRDITMLQWGLYGGTMAFFAYTEGYKAFQCKFSPLVVQRAMTLSTRSPPPPLLHSVLAPFYSMGLFHASKKRKTVSWSISLGVACIIGLVKRLPYPWRSVVDAGVCTGLLWGGTSIGVIYLRALAGKSPGVDPELPKEDK 242          
BLAST of mRNA_H-akashiwo_Contig1013.2.1 vs. uniprot
Match: A0A836CMT5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMT5_9STRA)

HSP 1 Score: 168 bits (426), Expect = 6.370e-49
Identity = 81/174 (46.55%), Postives = 117/174 (67.24%), Query Frame = 1
Query:   37 KFGLASTWGVVCVLSVLYNAIKRLSPVAFEVFGSTKT--LSPVFWASYASFVAFMAYTEGYKAFQKKFSPLVVKRALTLDE-KLTPMRAVFAGPYCMGMFHATKARKIVSWSITIGVFGLVQVVKRLPFPYRSLVDAGVVAGLSWGGTSILCYYVRSLFGTPPSIDPALPKAEE 549
            K G AS+WGV+ VL++  NA +RL PVA E    +    L+ V W  YA   A + Y +G +A ++KFS  VV+RALTLD+ + TP+R + AGPY MG+F A + RK  SW + +   G+++V+K++P+P+RS+VDAGV+AGL WGG ++  Y+VRS  G  P +DP +PK  E
Sbjct:   85 KIGWASSWGVLSVLAIFANAARRLGPVAIEPLQMSDKGGLTTVQWVCYAGCTALIGYMKGERAIRRKFSRHVVQRALTLDQGEATPLRVLLAGPYSMGLFRANRRRKASSWGMLVAAVGIIKVIKKMPYPWRSIVDAGVLAGLCWGGGAVAYYWVRSWSGINPGVDPQMPKRSE 258          
BLAST of mRNA_H-akashiwo_Contig1013.2.1 vs. uniprot
Match: A0A7S3K4D7_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K4D7_9STRA)

HSP 1 Score: 166 bits (421), Expect = 1.210e-48
Identity = 81/177 (45.76%), Postives = 113/177 (63.84%), Query Frame = 1
Query:    7 VKGGSDSVKSKFGLASTWGVVCVLSVLYNAIKRLSPVAFEVFGSTKTLSPVFWASYASFVAFMAYTEGYKAFQKKFSPLVVKRALTLDEKLTPMRAVFAGPYCMGMFHATKARKIVSWSITIGVFGLVQVVKRLPFPYRSLVDAGVVAGLSWGGTSILCYYVRSLFGTPPSIDPALP 537
            +  G  +++ +  +AS WGV  V+++L NA+KR+ PVA E F +   L    W +YA+F A M Y EGYK+F KKFSPLV  R++TL +       +FA  Y MG+FHAT  R+  SW   IGVF LV++VK+  +P+RS+VD GVV GL+ G  SI+ +Y R + G P   DP+LP
Sbjct:   42 IPSGGAALEQRPTVASVWGVAGVVAMLMNAVKRVLPVALEPFRTGSPLGAKMWCTYAAFAAVMGYVEGYKSFHKKFSPLVAARSMTLQKPHPFTYTLFAPFYAMGLFHATPKRRATSWGFLIGVFALVKIVKQFSYPWRSIVDGGVVVGLTIGSASIIWHYAREINGIPAPADPSLP 218          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1013.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CIU2_9STRA1.110e-6657.95Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZF77_9STRA4.200e-6556.35Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
W7TVP9_9STRA5.770e-6157.30Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A8J6CDI7_DIALT1.430e-5353.11Uncharacterized protein n=2 Tax=Diacronema lutheri... [more]
A0A0M0JX49_9EUKA2.210e-5350.88Uncharacterized protein n=1 Tax=Chrysochromulina t... [more]
A0A7R9U4X8_9STRA3.510e-5351.10Hypothetical protein n=2 Tax=Pinguiococcus pyrenoi... [more]
A0A7S2WJT5_9STRA1.990e-5152.57Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S3SW48_EMIHU1.530e-5051.16Hypothetical protein n=2 Tax=Emiliania huxleyi Tax... [more]
A0A836CMT5_9STRA6.370e-4946.55Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3K4D7_9STRA1.210e-4845.76Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1013contigH-akashiwo_Contig1013:89338..89898 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2903.EOD04443
Model size561
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.12e-51
EggNOG OGs2BRVF@1|root,2S1X8@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-12_003930.1
Cds size561
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387051.1371434-CDS-H-akashiwo_Contig1013:89337..898981681387051.1371434-CDS-H-akashiwo_Contig1013:89337..89898Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1013 89338..89898 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1013.2.1prot_H-akashiwo_Contig1013.2.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1013 89338..89898 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1013.2.1

>prot_H-akashiwo_Contig1013.2.1 ID=prot_H-akashiwo_Contig1013.2.1|Name=mRNA_H-akashiwo_Contig1013.2.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=187bp
MNVKGGSDSVKSKFGLASTWGVVCVLSVLYNAIKRLSPVAFEVFGSTKTL
SPVFWASYASFVAFMAYTEGYKAFQKKFSPLVVKRALTLDEKLTPMRAVF
AGPYCMGMFHATKARKIVSWSITIGVFGLVQVVKRLPFPYRSLVDAGVVA
GLSWGGTSILCYYVRSLFGTPPSIDPALPKAEEKNN*
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mRNA from alignment at H-akashiwo_Contig1013:89338..89898-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1013.2.1 ID=mRNA_H-akashiwo_Contig1013.2.1|Name=mRNA_H-akashiwo_Contig1013.2.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=561bp|location=Sequence derived from alignment at H-akashiwo_Contig1013:89338..89898- (Heterosigma akashiwo CCMP452)
ATGAATGTAAAGGGTGGTTCAGATAGTGTGAAGTCAAAATTTGGGCTTGC GTCGACGTGGGGTGTGGTATGCGTGCTTAGTGTTCTTTATAACGCCATTA AGAGACTGAGCCCGGTTGCATTTGAAGTCTTTGGCTCTACCAAAACGCTG AGCCCAGTATTCTGGGCTTCCTATGCTTCTTTTGTTGCATTTATGGCATA CACAGAAGGTTACAAAGCTTTCCAAAAAAAGTTTTCTCCCTTGGTAGTCA AAAGAGCTCTCACGCTTGATGAAAAATTGACCCCGATGCGGGCCGTTTTT GCTGGCCCATATTGTATGGGAATGTTTCACGCCACAAAAGCGAGAAAAAT TGTCAGTTGGAGCATTACTATCGGTGTGTTCGGCCTTGTTCAGGTTGTGA AGCGGCTGCCATTCCCTTACCGGTCTCTGGTCGATGCAGGTGTGGTGGCT GGTCTTTCCTGGGGCGGAACATCAATCTTGTGCTACTATGTACGCTCCCT GTTTGGCACGCCGCCTTCCATTGATCCTGCTCTTCCAAAGGCTGAAGAAA AGAATAACTAG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1013:89338..89898-

>mRNA_H-akashiwo_Contig1013.2.1 ID=mRNA_H-akashiwo_Contig1013.2.1|Name=mRNA_H-akashiwo_Contig1013.2.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=561bp|location=Sequence derived from alignment at H-akashiwo_Contig1013:89338..89898- (Heterosigma akashiwo CCMP452)
ATGAATGTAAAGGGTGGTTCAGATAGTGTGAAGTCAAAATTTGGGCTTGC
GTCGACGTGGGGTGTGGTATGCGTGCTTAGTGTTCTTTATAACGCCATTA
AGAGACTGAGCCCGGTTGCATTTGAAGTCTTTGGCTCTACCAAAACGCTG
AGCCCAGTATTCTGGGCTTCCTATGCTTCTTTTGTTGCATTTATGGCATA
CACAGAAGGTTACAAAGCTTTCCAAAAAAAGTTTTCTCCCTTGGTAGTCA
AAAGAGCTCTCACGCTTGATGAAAAATTGACCCCGATGCGGGCCGTTTTT
GCTGGCCCATATTGTATGGGAATGTTTCACGCCACAAAAGCGAGAAAAAT
TGTCAGTTGGAGCATTACTATCGGTGTGTTCGGCCTTGTTCAGGTTGTGA
AGCGGCTGCCATTCCCTTACCGGTCTCTGGTCGATGCAGGTGTGGTGGCT
GGTCTTTCCTGGGGCGGAACATCAATCTTGTGCTACTATGTACGCTCCCT
GTTTGGCACGCCGCCTTCCATTGATCCTGCTCTTCCAAAGGCTGAAGAAA
AGAATAACTAG
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