mRNA_H-akashiwo_Contig1012.9.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1012.9.1
Unique NamemRNA_H-akashiwo_Contig1012.9.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1012.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1012contigH-akashiwo_Contig1012:341306..341616 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size302
Hectar predicted targeting categoryother localisation
Exons2
Cds size300
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387050.8884587-CDS-H-akashiwo_Contig1012:341305..3413921681387050.8884587-CDS-H-akashiwo_Contig1012:341305..341392Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1012 341306..341392 +
1681387050.8988805-CDS-H-akashiwo_Contig1012:341402..3416151681387050.8988805-CDS-H-akashiwo_Contig1012:341402..341615Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1012 341403..341615 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1012.9.1prot_H-akashiwo_Contig1012.9.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1012 341306..341615 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1012.9.1

>prot_H-akashiwo_Contig1012.9.1 ID=prot_H-akashiwo_Contig1012.9.1|Name=mRNA_H-akashiwo_Contig1012.9.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=100bp
PGKNYYGSTPGFYALWGLAPYLNPGIPAPDRPIKIQATLAKTLINSRFTA
ILTRDEGVAAAARLTAQDKARIRSAGGPGSSAWLEALPNRWVTRLTNEHM
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mRNA from alignment at H-akashiwo_Contig1012:341306..341616+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1012.9.1 ID=mRNA_H-akashiwo_Contig1012.9.1|Name=mRNA_H-akashiwo_Contig1012.9.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=311bp|location=Sequence derived from alignment at H-akashiwo_Contig1012:341306..341616+ (Heterosigma akashiwo CCMP452)
CCAGGGAAGAACTACTACGGCTCAACCCCCGGCTTCTATGCCCTTTGGGG
ACTCGCTCCCTATCTCAACCCAGGAATCCCTGCCCCAGCACCACGAGGAC
CGGCCCATTAAGATCCAGGCCACCCTGGCCAAGACTTTGATAAACAGCCG
CTTCACAGCCATCCTCACCAGAGACGAGGGAGTCGCAGCTGCCGCCCGGC
TGACCGCACAAGACAAGGCGCGCATCAGATCGGCAGGAGGGCCCGGctCC
TCAGCCTGGCTGGAGGCCTTGCCCAACAGGTGGGTCACTCGCCTCACCAA
CGAGCATATGC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1012:341306..341616+

>mRNA_H-akashiwo_Contig1012.9.1 ID=mRNA_H-akashiwo_Contig1012.9.1|Name=mRNA_H-akashiwo_Contig1012.9.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=300bp|location=Sequence derived from alignment at H-akashiwo_Contig1012:341306..341616+ (Heterosigma akashiwo CCMP452)
CCAGGGAAGAACTACTACGGCTCAACCCCCGGCTTCTATGCCCTTTGGGG
ACTCGCTCCCTATCTCAACCCAGGAATCCCTGCCCCAGACCGGCCCATTA
AGATCCAGGCCACCCTGGCCAAGACTTTGATAAACAGCCGCTTCACAGCC
ATCCTCACCAGAGACGAGGGAGTCGCAGCTGCCGCCCGGCTGACCGCACA
AGACAAGGCGCGCATCAGATCGGCAGGAGGGCCCGGctCCTCAGCCTGGC
TGGAGGCCTTGCCCAACAGGTGGGTCACTCGCCTCACCAACGAGCATATG
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