mRNA_H-akashiwo_Contig1011.7.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1011.7.1
Unique NamemRNA_H-akashiwo_Contig1011.7.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
[Close]
BLAST of mRNA_H-akashiwo_Contig1011.7.1 vs. uniprot
Match: A0A6V1P5X7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1P5X7_HETAK)

HSP 1 Score: 224 bits (572), Expect = 4.500e-67
Identity = 107/147 (72.79%), Postives = 128/147 (87.07%), Query Frame = 1 
Query:    4 IKNLKLHKASGIDGVSNEIICFSSPFIMNILELLFNKVLQTRYFPSGWNLVMISPLFKSDDPHDPNNYRGISLLSCLGKLFCSIVNEYLTVKVESAQLLTELQGGFRRKRGCREQSFLLLSTLLSAEKRRGKQAFCTFVDFKKAYDS 444
            I+ LK  KA+GID V NEI+ +S+ FI+  LE LFN+VL+TRYFPS WN+VMISPLFKSDDP+D NNYRGISLLSCLGKLFCSI+NE++  +VESA LL++LQGGFRRKRGCREQSFLLLS LL+A +RRG++A C FVDF+KAYDS
Sbjct:   47 IRKLKRRKAAGIDAVYNEILIYSASFIIGALETLFNEVLKTRYFPSTWNVVMISPLFKSDDPNDTNNYRGISLLSCLGKLFCSIINEFVYTQVESAHLLSDLQGGFRRKRGCREQSFLLLSALLTANRRRGRRAHCAFVDFRKAYDS 193
[Close]
BLAST of mRNA_H-akashiwo_Contig1011.7.1 vs. uniprot
Match: A0A6H5JSE2_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSE2_9PHAE)

HSP 1 Score: 126 bits (316), Expect = 5.670e-33
Identity = 59/147 (40.14%), Postives = 92/147 (62.59%), Query Frame = 1 
Query:    4 IKNLKLHKASGIDGVSNEIICFSSPFIMNILELLFNKVLQTRYFPSGWNLVMISPLFKSDDPHDPNNYRGISLLSCLGKLFCSIVNEYLTVKVESAQLLTELQGGFRRKRGCREQSFLLLSTLLSAEKRRGKQAFCTFVDFKKAYDS 444
            +  LK +KA+G DG++NE + F    ++ ++ LL+N V +  Y PS W   ++  LFK  D  DP NYRGI+LL+ +GK+FC ++N+ +   +E    ++E Q GFR+KRGC +  F +   ++   KR GK  +C F+D KKAYD+
Sbjct:  119 VNKLKCYKAAGADGIANEFMKFGGKGMIQLMVLLYNWVWKNEYTPSRWREGVVVNLFKKGDKTDPGNYRGITLLNTVGKVFCKLLNDRIVGVLEKEHSISEGQAGFRKKRGCVDHVFTV-GRIIQGRKRAGKPTYCFFLDVKKAYDT 264
[Close]
BLAST of mRNA_H-akashiwo_Contig1011.7.1 vs. uniprot
Match: A0A6H5JMB0_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMB0_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 1.430e-32
Identity = 60/147 (40.82%), Postives = 91/147 (61.90%), Query Frame = 1 
Query:    4 IKNLKLHKASGIDGVSNEIICFSSPFIMNILELLFNKVLQTRYFPSGWNLVMISPLFKSDDPHDPNNYRGISLLSCLGKLFCSIVNEYLTVKVESAQLLTELQGGFRRKRGCREQSFLLLSTLLSAEKRRGKQAFCTFVDFKKAYDS 444
            +  LK HKA+G DG+ NE + F    ++ ++ LL+N V +  Y PS W   ++  LFK  D  DP NYRGI+LL+ +GK+FC ++N+ +   +E    ++E Q GFR+KRGC +  F +   ++   KR GK  +C F+D KKAYD+
Sbjct:  146 VNKLKCHKAAGADGIVNEFMKFGGKGMIQLMVLLYNWVWKNEYTPSRWREGVVVNLFKKGDKTDPGNYRGITLLNTVGKVFCKLLNDRIVGVLEKEHSISEGQAGFRKKRGCVDHVFTV-GRIIQGRKRAGKPTYCFFLDVKKAYDT 291
[Close]
BLAST of mRNA_H-akashiwo_Contig1011.7.1 vs. uniprot
Match: A0A6H5L1M2_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1M2_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 2.030e-32
Identity = 60/147 (40.82%), Postives = 91/147 (61.90%), Query Frame = 1 
Query:    4 IKNLKLHKASGIDGVSNEIICFSSPFIMNILELLFNKVLQTRYFPSGWNLVMISPLFKSDDPHDPNNYRGISLLSCLGKLFCSIVNEYLTVKVESAQLLTELQGGFRRKRGCREQSFLLLSTLLSAEKRRGKQAFCTFVDFKKAYDS 444
            +  LK HKA+G DG+ NE + F    ++ ++ LL+N V +  Y PS W   ++  LFK  D  DP NYRGI+LL+ +GK+FC ++N+ +   +E    ++E Q GFR+KRGC +  F +   ++   KR GK  +C F+D KKAYD+
Sbjct:   30 VNKLKCHKAAGADGIVNEFMKFGGKGMIQLMVLLYNWVWKNEYTPSRWREGVVVNLFKKGDKTDPGNYRGITLLNTVGKVFCKLLNDRIVGVLEKEHSISEGQAGFRKKRGCVDHVFTV-GRIIQGRKRAGKPTYCFFLDVKKAYDT 175
[Close]
BLAST of mRNA_H-akashiwo_Contig1011.7.1 vs. uniprot
Match: A0A6H5KYR3_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYR3_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 2.980e-32
Identity = 60/147 (40.82%), Postives = 91/147 (61.90%), Query Frame = 1 
Query:    4 IKNLKLHKASGIDGVSNEIICFSSPFIMNILELLFNKVLQTRYFPSGWNLVMISPLFKSDDPHDPNNYRGISLLSCLGKLFCSIVNEYLTVKVESAQLLTELQGGFRRKRGCREQSFLLLSTLLSAEKRRGKQAFCTFVDFKKAYDS 444
            +  LK HKA+G DG+ NE + F    ++ ++ LL+N V +  Y PS W   ++  LFK  D  DP NYRGI+LL+ +GK+FC ++N+ +   +E    ++E Q GFR+KRGC +  F +   ++   KR GK  +C F+D KKAYD+
Sbjct:  157 VNKLKCHKAAGADGIVNEFMKFGGKGMIQLMVLLYNWVWKNEYTPSRWREGVVVNLFKKGDKTDPGNYRGITLLNTVGKVFCKLLNDRIVGVLEKEHSISEGQAGFRKKRGCVDHVFTV-GRIIQGRKRAGKPTYCFFLDVKKAYDT 302
[Close]
BLAST of mRNA_H-akashiwo_Contig1011.7.1 vs. uniprot
Match: A0A6H5KGV1_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGV1_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 3.120e-32
Identity = 60/147 (40.82%), Postives = 91/147 (61.90%), Query Frame = 1 
Query:    4 IKNLKLHKASGIDGVSNEIICFSSPFIMNILELLFNKVLQTRYFPSGWNLVMISPLFKSDDPHDPNNYRGISLLSCLGKLFCSIVNEYLTVKVESAQLLTELQGGFRRKRGCREQSFLLLSTLLSAEKRRGKQAFCTFVDFKKAYDS 444
            +  LK HKA+G DG+ NE + F    ++ ++ LL+N V +  Y PS W   ++  LFK  D  DP NYRGI+LL+ +GK+FC ++N+ +   +E    ++E Q GFR+KRGC +  F +   ++   KR GK  +C F+D KKAYD+
Sbjct:   98 VNKLKCHKAAGADGIVNEFMKFGGKGMIQLMVLLYNWVWKNEYTPSRWREGVVVNLFKKGDKTDPGNYRGITLLNTVGKVFCKLLNDRIVGVLEKEHSISEGQAGFRKKRGCVDHVFTV-GRIIQGRKRAGKPTYCFFLDVKKAYDT 243
[Close]
BLAST of mRNA_H-akashiwo_Contig1011.7.1 vs. uniprot
Match: A0A6H5JN88_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN88_9PHAE)

HSP 1 Score: 127 bits (318), Expect = 4.500e-32
Identity = 60/147 (40.82%), Postives = 91/147 (61.90%), Query Frame = 1 
Query:    4 IKNLKLHKASGIDGVSNEIICFSSPFIMNILELLFNKVLQTRYFPSGWNLVMISPLFKSDDPHDPNNYRGISLLSCLGKLFCSIVNEYLTVKVESAQLLTELQGGFRRKRGCREQSFLLLSTLLSAEKRRGKQAFCTFVDFKKAYDS 444
            +  LK HKA+G DG+ NE + F    ++ ++ LL+N V +  Y PS W   ++  LFK  D  DP NYRGI+LL+ +GK+FC ++N+ +   +E    ++E Q GFR+KRGC +  F +   ++   KR GK  +C F+D KKAYD+
Sbjct:  160 VNKLKCHKAAGADGIVNEFMKFGGKGMIQLMVLLYNWVWKNEYTPSRWREGVVVNLFKKGDKTDPGNYRGITLLNTVGKVFCRLLNDRIVGALEKEHNISEGQAGFRKKRGCVDHVFTV-GRIIQGRKRAGKPTYCFFLDVKKAYDT 305
[Close]
BLAST of mRNA_H-akashiwo_Contig1011.7.1 vs. uniprot
Match: A0A6H5JEB0_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEB0_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 1.360e-31
Identity = 60/147 (40.82%), Postives = 91/147 (61.90%), Query Frame = 1 
Query:    4 IKNLKLHKASGIDGVSNEIICFSSPFIMNILELLFNKVLQTRYFPSGWNLVMISPLFKSDDPHDPNNYRGISLLSCLGKLFCSIVNEYLTVKVESAQLLTELQGGFRRKRGCREQSFLLLSTLLSAEKRRGKQAFCTFVDFKKAYDS 444
            +  LK HKA+G DG+ NE + F    ++ ++ LL+N V +  Y PS W   ++  LFK  D  DP NYRGI+LL+ +GK+FC ++N+ +   +E    ++E Q GFR+KRGC +  F +   ++   KR GK  +C F+D KKAYD+
Sbjct:  160 VNKLKCHKAAGADGIVNEFMKFGGKGMIQLMVLLYNWVWKNEYTPSRWREGVVVNLFKKGDKTDPGNYRGITLLNTVGKVFCKLLNDRIVGVLEKEHSISEGQAGFRKKRGCVDHVFTV-GRIIQGRKRAGKPTYCFFLDVKKAYDT 305
[Close]
BLAST of mRNA_H-akashiwo_Contig1011.7.1 vs. uniprot
Match: A0A6H5KEC3_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEC3_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 1.570e-31
Identity = 58/147 (39.46%), Postives = 90/147 (61.22%), Query Frame = 1 
Query:    4 IKNLKLHKASGIDGVSNEIICFSSPFIMNILELLFNKVLQTRYFPSGWNLVMISPLFKSDDPHDPNNYRGISLLSCLGKLFCSIVNEYLTVKVESAQLLTELQGGFRRKRGCREQSFLLLSTLLSAEKRRGKQAFCTFVDFKKAYDS 444
            +  +K HKA+G DG+ NE + F    ++ ++ LL+N V +  Y PS W   ++  LFK  D  DP NYRGI+LL+ +GK+FC ++N+ +   +E     +E Q GFR+KRGC + +F +   ++   +R GK   C F+D KKAYD+
Sbjct:   26 VNKMKCHKAAGADGIVNEFMKFGGKGMIQLMVLLYNWVWKNEYTPSRWREGVVVNLFKKGDKTDPGNYRGITLLNTVGKVFCKLLNDRIVGVLEKEHSASEGQAGFRKKRGCVDHAFPV-GRIIQGRERAGKPTVCFFLDVKKAYDT 171
[Close]
BLAST of mRNA_H-akashiwo_Contig1011.7.1 vs. uniprot
Match: A0A6H5K1P7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1P7_9PHAE)

HSP 1 Score: 127 bits (320), Expect = 2.210e-31
Identity = 60/147 (40.82%), Postives = 91/147 (61.90%), Query Frame = 1 
Query:    4 IKNLKLHKASGIDGVSNEIICFSSPFIMNILELLFNKVLQTRYFPSGWNLVMISPLFKSDDPHDPNNYRGISLLSCLGKLFCSIVNEYLTVKVESAQLLTELQGGFRRKRGCREQSFLLLSTLLSAEKRRGKQAFCTFVDFKKAYDS 444
            +  LK HKA+G DG+ NE + F    ++ ++ LL+N V +  Y PS W   ++  LFK  D  DP NYRGI+LL+ +GK+FC ++N+ +   +E    ++E Q GFR+KRGC +  F +   ++   KR GK  +C F+D KKAYD+
Sbjct:   98 VNKLKCHKAAGADGIVNEFMKFGGKGMIQLMALLYNWVWKNEYTPSRWREGVVVNLFKKGDKTDPGNYRGITLLNTVGKVFCKLLNDRIVGVLEKEHSISEGQAGFRKKRGCVDHVFTV-GRIIQGRKRAGKPTYCFFLDVKKAYDT 243
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1011.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6V1P5X7_HETAK4.500e-6772.79Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6H5JSE2_9PHAE5.670e-3340.14Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JMB0_9PHAE1.430e-3240.82Reverse transcriptase domain-containing protein n=... [more]
A0A6H5L1M2_9PHAE2.030e-3240.82Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KYR3_9PHAE2.980e-3240.82Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KGV1_9PHAE3.120e-3240.82Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JN88_9PHAE4.500e-3240.82Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JEB0_9PHAE1.360e-3140.82Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KEC3_9PHAE1.570e-3139.46Reverse transcriptase domain-containing protein (F... [more]
A0A6H5K1P7_9PHAE2.210e-3140.82Reverse transcriptase domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1011contigH-akashiwo_Contig1011:223513..223956 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog10224.XP_006823893.1
PFAMsRVT_1
Model size444
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.12e-27
EggNOG OGsKOG1075@1|root,KOG1075@2759|Eukaryota,38VUX@33154|Opisthokonta,3C5TU@33208|Metazoa,3DF9K@33213|Bilateria
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
Cds size444
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387050.672942-CDS-H-akashiwo_Contig1011:223512..2239561681387050.672942-CDS-H-akashiwo_Contig1011:223512..223956Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1011 223513..223956 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1011.7.1prot_H-akashiwo_Contig1011.7.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1011 223513..223956 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1011.7.1

>prot_H-akashiwo_Contig1011.7.1 ID=prot_H-akashiwo_Contig1011.7.1|Name=mRNA_H-akashiwo_Contig1011.7.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=148bp
AIKNLKLHKASGIDGVSNEIICFSSPFIMNILELLFNKVLQTRYFPSGWN
LVMISPLFKSDDPHDPNNYRGISLLSCLGKLFCSIVNEYLTVKVESAQLL
TELQGGFRRKRGCREQSFLLLSTLLSAEKRRGKQAFCTFVDFKKAYDS
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mRNA from alignment at H-akashiwo_Contig1011:223513..223956-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1011.7.1 ID=mRNA_H-akashiwo_Contig1011.7.1|Name=mRNA_H-akashiwo_Contig1011.7.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=444bp|location=Sequence derived from alignment at H-akashiwo_Contig1011:223513..223956- (Heterosigma akashiwo CCMP452)
GCCATTAAGAATCTGAAGCTCCATAAAGCGTCTGGTATTGACGGGGTTTC
GAACGAAATTATTTGTTTTTCTTCCCCGTTCATAATGAATATACTTGAAC
TGTTATTCAACAAGGTCTTACAGACCCGATATTTTCCCTCTGGTTGGAAT
TTAGTGATGATTTCCCCTTTATTCAAAAGTGACGATCCACATGACCCAAA
TAACTACAGAGGCATATCCCTTCTGTCGTGTCTGGGTAAGCTATTCTGTT
CTATAGTCAATGAATATCTGACTGTCAAAGTGGAGTCTGCCCAGCTGCTC
ACAGAGCTACAGGGTGGTTTTAGGAGAAAAAGGGGTTGTCGTGAACAAAG
CTTCCTCCTTTTGAGTACGTTGCTTTCTGCAGAGAAGAGGCGGGGCAAGC
AGGCTTTCTGTACCTTTGTTGATTTCAAGAAGGCATATGATAGT
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1011:223513..223956-

>mRNA_H-akashiwo_Contig1011.7.1 ID=mRNA_H-akashiwo_Contig1011.7.1|Name=mRNA_H-akashiwo_Contig1011.7.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=444bp|location=Sequence derived from alignment at H-akashiwo_Contig1011:223513..223956- (Heterosigma akashiwo CCMP452)
GCCATTAAGAATCTGAAGCTCCATAAAGCGTCTGGTATTGACGGGGTTTC
GAACGAAATTATTTGTTTTTCTTCCCCGTTCATAATGAATATACTTGAAC
TGTTATTCAACAAGGTCTTACAGACCCGATATTTTCCCTCTGGTTGGAAT
TTAGTGATGATTTCCCCTTTATTCAAAAGTGACGATCCACATGACCCAAA
TAACTACAGAGGCATATCCCTTCTGTCGTGTCTGGGTAAGCTATTCTGTT
CTATAGTCAATGAATATCTGACTGTCAAAGTGGAGTCTGCCCAGCTGCTC
ACAGAGCTACAGGGTGGTTTTAGGAGAAAAAGGGGTTGTCGTGAACAAAG
CTTCCTCCTTTTGAGTACGTTGCTTTCTGCAGAGAAGAGGCGGGGCAAGC
AGGCTTTCTGTACCTTTGTTGATTTCAAGAAGGCATATGATAGT
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