mRNA_H-akashiwo_Contig1011.3.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1011.3.1
Unique NamemRNA_H-akashiwo_Contig1011.3.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1011.3.1 vs. uniprot
Match: A0A7S3XPM9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XPM9_HETAK)

HSP 1 Score: 64.3 bits (155), Expect = 2.720e-10
Identity = 33/60 (55.00%), Postives = 41/60 (68.33%), Query Frame = 1 
Query:    1 MSNISYTALTCALLGAPFLLVMILFWANVSEGDAFGKILDVTGDFNDGSIALIFPGLLYM 180
            M +IS+  LT  LLG PF +VM LF+  VSEG+AFG ILDVTG    G I+L  PGL+ +
Sbjct:  185 MGSISFILLTVVLLGMPFAVVMALFFFQVSEGEAFGYILDVTGALCTGLISLTLPGLIVL 244
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BLAST of mRNA_H-akashiwo_Contig1011.3.1 vs. uniprot
Match: A0A6V1M2K4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1M2K4_HETAK)

HSP 1 Score: 53.1 bits (126), Expect = 3.010e-6
Identity = 24/54 (44.44%), Postives = 34/54 (62.96%), Query Frame = 1 
Query:   16 YTALTCALLGAPFLLVMILFWANVSEGDAFGKILDVTGDFNDGSIALIFPGLLY 177
            Y  +T  LL     +VM+L++A VSEGDAFG ILD+TG   +  +  + PG+ Y
Sbjct:  234 YVVVTVGLLTFSLGVVMVLYYAGVSEGDAFGYILDLTGGVGNAMLGFVLPGIFY 287
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BLAST of mRNA_H-akashiwo_Contig1011.3.1 vs. uniprot
Match: A0A6V2Y555_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2Y555_HETAK)

HSP 1 Score: 53.1 bits (126), Expect = 3.170e-6
Identity = 24/54 (44.44%), Postives = 34/54 (62.96%), Query Frame = 1 
Query:   16 YTALTCALLGAPFLLVMILFWANVSEGDAFGKILDVTGDFNDGSIALIFPGLLY 177
            Y  +T  LL     +VM+L++A VSEGDAFG ILD+TG   +  +  + PG+ Y
Sbjct:  370 YVVVTVGLLTFSLGVVMVLYYAGVSEGDAFGYILDLTGGVGNAMLGFVLPGIFY 423
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1011.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A7S3XPM9_HETAK2.720e-1055.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6V1M2K4_HETAK3.010e-644.44Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6V2Y555_HETAK3.170e-644.44Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1011contigH-akashiwo_Contig1011:119436..123528 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size251
Hectar predicted targeting categorysignal peptide
Exons2
Cds size249
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387050.3921702-CDS-H-akashiwo_Contig1011:119435..1195621681387050.3921702-CDS-H-akashiwo_Contig1011:119435..119562Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1011 119436..119562 +
1681387050.4027226-CDS-H-akashiwo_Contig1011:123406..1235281681387050.4027226-CDS-H-akashiwo_Contig1011:123406..123528Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1011 123407..123528 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1011.3.1prot_H-akashiwo_Contig1011.3.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1011 119436..123528 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1011.3.1

>prot_H-akashiwo_Contig1011.3.1 ID=prot_H-akashiwo_Contig1011.3.1|Name=mRNA_H-akashiwo_Contig1011.3.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=83bp
MSNISYTALTCALLGAPFLLVMILFWANVSEGDAFGKILDVTGDFNDGSI
ALIFPGLLYMSKAHELSSPGTSFTTNLLVHLKT
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mRNA from alignment at H-akashiwo_Contig1011:119436..123528+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1011.3.1 ID=mRNA_H-akashiwo_Contig1011.3.1|Name=mRNA_H-akashiwo_Contig1011.3.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=4093bp|location=Sequence derived from alignment at H-akashiwo_Contig1011:119436..123528+ (Heterosigma akashiwo CCMP452)
ATGTCAAACATTTCTTACACAGCGTTGACATGCGCGCTCCTTGGCGCTCC
TTTCTTGCTAGTTATGATTCTTTTTTGGGCAAATGTATCGGAAGGGGATG
CGTTCGGCAAGATATTAGATGTAACAGGTGCCCCTTGTCCATAATCTCTT
CCAGTATTTCCATACTTATGTATGTGCAGCTGCTGCGTTTTAAGCATGAT
GAAAACCATGTGCACAAATCATTTGAATCGATCAAAGGGGCAATATCCAC
TATATCCGTTATATGGACGCTGTCGTGAGTCGCTGGCCAAAAAAAAAGGC
CGTTTTTGGAAATCACCGTCGTCGGACGAAAACCGCCATCACCATAAAAA
GTTGTTGAAACATCCTTTTTTTAGCCAAATCACCGTCAGTTGTTGGTTCA
ACAACAATTTTGCCAGCTGATTTGGCGTGTCCTGGATCTTTCTCCAGGCG
CTATGTGTGGAAGTTCCTGAGGTTTAGTGTCATCAAAGGGCACCATTAGG
GTTACCATTTGCCACCATGATCTTGGAAAATGGTACACAGCGCCATGCAG
GAGGCCCCCCTGAAAGGAGCAGTGGGAGGGCCAAACTACAATCAAGGTTG
TTGCAACCACAATTTGGGGTGGCGGAGGTGTCAAAAAGAATCTTCAAATA
GAATTCTAAAGGACAAAAAGTGTGGATCAAATCCGAACAACACGGTGAAA
TCCACCAATAGGGCTCATTTTCGAACAAAAAGGAATGCTCCAACACGCTC
ACCCAACAGCATGATGTAGGAATGTACAGAAGAGTAGAAGGATCGACAGC
AATACTATAAGGTAGACCCAGAATCCCTCCGCAGAATGAAAATGTAAATG
TGGCCATTCGAGCAAGGTAGTGTTCTTTGCTGGGATGTACTGTGAATGTC
TTTGTAAACAGGTCAGATCATTTTGGCCCAATTGCAAATGGCCCAATATT
CCAATGAAATGACACTTTTTCTTTGTTCAATTCGAAATATTGCAGTTTCA
GTGTTAAAACTGATAATAATACACACTCGGTATAAAACTATTTCAACTGC
AATAATTTCACTAATAAGATGACCAATCCTTTAAAATTTGGAGGGGAATT
ATTTTGATAACAAGCCATCCCGATCTCTAAAAAGACTTGCAAAGAAGTTT
TGGTAACATATACTCTGCTTGCAAACTTTTGCTTCTTTATATTGCTGGGG
TGTTTGTTGTTGGTGAGGAAGCTTGCCAGAGCTAGTCTGAATCTGAACGA
AACCTTGCCAAATCAAACTATATACAATGATGGCTGATAGAGATACCTCC
CGTATGATTTCTCTGGATAAAATGCCATCTACAGTTGGTTTCCAAGCTGT
TTTTCTTTTTCGCTTTCGGTCGCAAAACCTAAAAAATGGATAGGAACGAA
CAACGAACCGATCTAGCCCGTTTTCTTTAGTTCAGGTATGAATTCACATC
ACAACACGCCTATGAAAAACGTTTAAAGCCTTCAAAGCCCCACCAATTCC
TGTCCAAGCCAATGATCAAGTTCATTACATTGTCACCAGCTGTAGTGCAC
TTGCATGTAAATGAGATACGCCGCAATACGGATCCTAGAGTTAAGCAAAC
CACAAAATGTTTCCCTTGTAAATGTGATCTCGAAATCAAACCACAATGAT
TAGTATCAATTTCCCTTTTTTTGCCAGCAACCCATGACAGCGTCCATATA
TTTTGTGACATTTCAGCTAATACTTTCATCAGTGAGTTCATAAATTCATC
TCAAAAGAGATTCTATCTAAAAATAAATACAGTACTGTTCAGAGCAACAG
CAATGTAGCTTCTCCCTACTATTTGTTTTTCTTTCGTGACGACTGTATTC
TGTCTGTCTTTCAACCATAAGATATGGAGCGAATCGCGAGTTGCGTGCAA
AAATAAAAGGGAAATCGATACAATCAATGTGGTTTGATTTGGAGATCACA
TTTGCAAGGGCAAATTTTTTGTGGTTTGCCTAGCTGCAGGATCCGTATCG
CGGCGTATCTCATTTTCATGCAAATGCGCTCTGGTTGGTGGTGGCAATAA
TGAACTTGATCTTTGGTTTGGACAGGGATTGGTGGGGCTCTGAAAGCTTT
AGACGTTTCTCATAGGTGTATTATGATGTAAATTAATACATGAACTAAAA
AAAACGGCCTCAATCAGTTTATTGTTCGTTCCTATCCATCTTGTAGGTGT
TGCGACCGAATGCACAAAAGCAAAACCAGCTTGGAAACCGACTGTAGATG
GCCATTTCATCCAGACAAAATCGTACGGGAGATATTTCACGTGCCAATAT
TGTACATAGTTTGATTTGGCGAGGTTTCGTTCGGATTCAAACTATAGCTC
TGGCAAGCTTCCCCACTGACAAATACTCCAAAGGCGATAAAAGCAAAACT
TTGCAAGCAGAGTGCATATGTTAACTAAAACTTGTTTGCACCTCTTTTTA
GAGATCGGGGTGACTCATTATCAAAAATATTACCCTCCAATTTTTTCAGG
TTTTCGTTACCATGGTGCAATCATTTCAGGGAAAATAGCGTTATACCGAG
TGTATACCATTATCAGTTTTAGCACTGAAACTGCAATATTTACGTTTGAA
CGAAGGAAAAGTGTCTTTTTTTTGGAATATTCGGCAATTTTCAATTGGGC
GAAATTGATATGACCTGTTGACCAAGACATTCTCAGCATATCCCAGCGAA
GAATGATGCCTTGCTCGAACGGCCAAATTTACATTTTCATTCTGCGGAAG
GATTCTGGTTCTAGCTGATAGTATTGCTGTCGATCCTTCTACTTTTCTGT
ATTCCTTCATCATACTGTTGGGTGAGCGTGTTGTTGGAGCATTCCTTTTC
CTTCAATCATGAGCCCTATTGGTATACCGTGTTGGTTGGATTTTACCCAC
ACTTTTTGTCCTTTAGAATTCTATTTGGAGATTCTTTTTGATACCTCCGC
CTCCCCAAATTGTGCTTGAAATAACAATGATTGTGGTTTGGCCCTCCCAC
TGCTCATTTCAAGGGGGCCTCCTGCATGGCACTGTGTACCATATCCCAAT
ATCATGGTGGCAAATGGTAACCCTAATGGTGCCCTTTGATGACACCAATC
CTCAGGAACTCCACACATAGCGCCTGGAGAAAGATCCAGAATACGTCAAA
TCAGCTGGCAAAATTGTTGTCGAAACAACAATTTGCGGTGATTCGGCTAA
AAAAATGTTGTTTCAACAATTTTTAATAGTGATCGCGATATTCGTCCAAC
GACGGTGATTTCCAAAAACGGCCTTTTTTTTGCACGCGACTCGCGATTCG
CTCCATGTCTGTAAACCAGAAGATGCCTGGGGGGCTTTGCCCCCAGACCC
TTCCAGATTGCGATGCTGTTTTGGGGATTTCTGCTGTGATGATGCTGCTG
CAGGTTGGTGCTGCTTTTAAATTCAGGTGATGTGTATTGGTAGTGCCGCT
GATGCTGGTGATACTGGCAGTTTTTCCAGTGATGATAATGCTGCTGTTAT
TATTGGTTGAAAAGAAGATTCAACATTTTTGTTCCGGTTGTTGGTGGTGG
ACTTGAAGGAAAGGTCTTGGCGTTTGATTTCCAGATGAGAGGAGTGCATT
GCATATTAGGGACGTAGAAAAAGGGGGGGGGTGGAACTTGCGGTTGCTTT
GTTTGTAACAGCAACGCAATATAGCAGCAAATATTTAAGAGTCTTGCTTC
TTGTATGAATACAGCAGCAAATATGAGAGTGATGTAATGCTTCTTAGATA
TAGAATATGTAAACTGATCATCGTTTAAAAAGAAAAAAAATGTTTTATTC
GTGCCATTTACCAGGGATATGTTGTTGCAAACTTCCGGTTGCTCATTTAT
GTGATCATGATGTTCTCCTATGATATACATGGGGTTTTATATATCACACT
GCTGATGTAGTGGTGATCTCAGTTTTTGTTCTCCCTTCTTTCCTCCTTTC
TTGTAATACTATTTGATGTAGGTGACTTTAATGATGGGTCCATTGCTCTG
ATATTCCCTGGGCTACTTTACATGAGTAAAGCTCATGAACTTTCCAGCCC
AGGAACTTCATTCACAACCAACCTTTTGGTTCATCTCAAAACC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1011:119436..123528+

>mRNA_H-akashiwo_Contig1011.3.1 ID=mRNA_H-akashiwo_Contig1011.3.1|Name=mRNA_H-akashiwo_Contig1011.3.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=249bp|location=Sequence derived from alignment at H-akashiwo_Contig1011:119436..123528+ (Heterosigma akashiwo CCMP452)
ATGTCAAACATTTCTTACACAGCGTTGACATGCGCGCTCCTTGGCGCTCC
TTTCTTGCTAGTTATGATTCTTTTTTGGGCAAATGTATCGGAAGGGGATG
CGTTCGGCAAGATATTAGATGTAACAGGTGACTTTAATGATGGGTCCATT
GCTCTGATATTCCCTGGGCTACTTTACATGAGTAAAGCTCATGAACTTTC
CAGCCCAGGAACTTCATTCACAACCAACCTTTTGGTTCATCTCAAAACC
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