mRNA_H-akashiwo_Contig1011.14.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1011.14.1
Unique NamemRNA_H-akashiwo_Contig1011.14.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1011.14.1 vs. uniprot
Match: A0A7S4DAY2_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DAY2_HETAK)

HSP 1 Score: 122 bits (307), Expect = 2.300e-32
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 1 
Query:    1 QGKYYVLLILTDGIINDMQKTIDTLVAASELPLSVLMVGVGDADFENMHILDADQERLKSTG 186
            QGKYYVLLILTDGIINDMQKTIDTLVAASELPLSVLMVGVGDADFENMHILDADQERLKSTG
Sbjct:  219 QGKYYVLLILTDGIINDMQKTIDTLVAASELPLSVLMVGVGDADFENMHILDADQERLKSTG 280
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BLAST of mRNA_H-akashiwo_Contig1011.14.1 vs. uniprot
Match: A0A7S2UZU9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZU9_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 2.880e-20
Identity = 42/60 (70.00%), Postives = 50/60 (83.33%), Query Frame = 1 
Query:    7 KYYVLLILTDGIINDMQKTIDTLVAASELPLSVLMVGVGDADFENMHILDADQERLKSTG 186
            KYYVLLI+TDG+ NDMQ+TID +V AS LPLS+L+VGVG ADF NMH+LDAD  RL + G
Sbjct:   88 KYYVLLIITDGMNNDMQQTIDAIVKASALPLSILIVGVGQADFSNMHVLDADNGRLSTPG 147
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BLAST of mRNA_H-akashiwo_Contig1011.14.1 vs. uniprot
Match: A0A7S4DJM6_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DJM6_HETAK)

HSP 1 Score: 81.6 bits (200), Expect = 2.290e-18
Identity = 39/59 (66.10%), Postives = 49/59 (83.05%), Query Frame = 1 
Query:    7 KYYVLLILTDGIINDMQKTIDTLVAASELPLSVLMVGVGDADFENMHILDADQERLKST 183
            KY+VLLILTDG+INDMQ T+D +V AS LPLS+++VGVG+ADF  MH LDAD+  L S+
Sbjct:   57 KYHVLLILTDGMINDMQNTVDAIVQASSLPLSIIIVGVGNADFSAMHKLDADEHGLVSS 115
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BLAST of mRNA_H-akashiwo_Contig1011.14.1 vs. uniprot
Match: A0A6P6X9Y1_COFAR (protein BONZAI 1-like isoform X2 n=5 Tax=Coffea TaxID=13442 RepID=A0A6P6X9Y1_COFAR)

HSP 1 Score: 85.9 bits (211), Expect = 4.260e-18
Identity = 41/59 (69.49%), Postives = 52/59 (88.14%), Query Frame = 1 
Query:    7 KYYVLLILTDGIINDMQKTIDTLVAASELPLSVLMVGVGDADFENMHILDADQERLKST 183
            KY+VLLI+TDG+I D+Q+TID  V AS+LPLSVL+VGVG ADF+ M ILDAD+ERL+S+
Sbjct:  455 KYFVLLIITDGVITDLQETIDAFVKASDLPLSVLIVGVGGADFKEMEILDADKERLESS 513
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BLAST of mRNA_H-akashiwo_Contig1011.14.1 vs. uniprot
Match: A0A3Q7H069_SOLLC (Uncharacterized protein n=6 Tax=Solanoideae TaxID=424551 RepID=A0A3Q7H069_SOLLC)

HSP 1 Score: 85.5 bits (210), Expect = 5.840e-18
Identity = 40/61 (65.57%), Postives = 54/61 (88.52%), Query Frame = 1 
Query:    1 QGKYYVLLILTDGIINDMQKTIDTLVAASELPLSVLMVGVGDADFENMHILDADQERLKST 183
            + KY+VLLI+TDG+I D+Q+T+D LV A++LPLSVL+VGVG ADF+ M ILDAD++RL+ST
Sbjct:  469 ERKYFVLLIITDGVITDLQETMDALVHAADLPLSVLIVGVGGADFKEMEILDADKQRLEST 529
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BLAST of mRNA_H-akashiwo_Contig1011.14.1 vs. uniprot
Match: A0A0V0IF77_SOLCH (C2 domain-containing protein n=1 Tax=Solanum chacoense TaxID=4108 RepID=A0A0V0IF77_SOLCH)

HSP 1 Score: 85.1 bits (209), Expect = 6.830e-18
Identity = 39/61 (63.93%), Postives = 54/61 (88.52%), Query Frame = 1 
Query:    1 QGKYYVLLILTDGIINDMQKTIDTLVAASELPLSVLMVGVGDADFENMHILDADQERLKST 183
            + KY++LLI+TDG+I D+Q+T+D LV A++LPLSVL+VGVG ADF+ M ILDAD++RL+ST
Sbjct:  337 ERKYFILLIITDGVITDLQETMDALVHAADLPLSVLIVGVGGADFKEMEILDADKQRLEST 397
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BLAST of mRNA_H-akashiwo_Contig1011.14.1 vs. uniprot
Match: A0A7R9U4V3_9STRA (Hypothetical protein n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U4V3_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 8.020e-18
Identity = 37/58 (63.79%), Postives = 49/58 (84.48%), Query Frame = 1 
Query:    7 KYYVLLILTDGIINDMQKTIDTLVAASELPLSVLMVGVGDADFENMHILDADQERLKS 180
            +Y VLLI+TDG+INDMQ TID +V  S LP+S+++VGVGDADF NMH+LD D+ RL++
Sbjct:  443 EYLVLLIMTDGVINDMQNTIDAIVECSHLPMSIIIVGVGDADFSNMHVLDGDEHRLRN 500
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BLAST of mRNA_H-akashiwo_Contig1011.14.1 vs. uniprot
Match: A0A2G2WTY8_CAPBA (Protein BONZAI 3 n=1 Tax=Capsicum baccatum TaxID=33114 RepID=A0A2G2WTY8_CAPBA)

HSP 1 Score: 82.0 bits (201), Expect = 1.050e-17
Identity = 40/61 (65.57%), Postives = 51/61 (83.61%), Query Frame = 1 
Query:    4 GKYYVLLILTDGIINDMQKTIDTLVAASELPLSVLMVGVGDADFENMHILDADQ-ERLKST 183
             KY+VLLI+TDG+I DMQ+TID LV AS+LPLS+L+VGVG ADF  M +LDAD  +RL+S+
Sbjct:   90 SKYFVLLIITDGVITDMQETIDALVRASDLPLSILIVGVGSADFSQMEVLDADNGQRLESS 150
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BLAST of mRNA_H-akashiwo_Contig1011.14.1 vs. uniprot
Match: A0A4D8YTK5_SALSN (Uncharacterized protein n=3 Tax=Salvia TaxID=21880 RepID=A0A4D8YTK5_SALSN)

HSP 1 Score: 84.3 bits (207), Expect = 1.490e-17
Identity = 40/62 (64.52%), Postives = 56/62 (90.32%), Query Frame = 1 
Query:    1 QGKYYVLLILTDGIINDMQKTIDTLVAASELPLSVLMVGVGDADFENMHILDADQ-ERLKST 183
            Q KYYVLLI+TDG+++D+++TI+++V AS+LPLS+L+VGVGDADF++M ILDAD   RL+ST
Sbjct:  462 QAKYYVLLIITDGVVSDLKETINSVVKASDLPLSILIVGVGDADFKDMEILDADNGRRLEST 523
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BLAST of mRNA_H-akashiwo_Contig1011.14.1 vs. uniprot
Match: A0A1U8H5J3_CAPAN (uncharacterized protein LOC107873942 n=4 Tax=Capsicum annuum TaxID=4072 RepID=A0A1U8H5J3_CAPAN)

HSP 1 Score: 84.3 bits (207), Expect = 1.510e-17
Identity = 38/61 (62.30%), Postives = 54/61 (88.52%), Query Frame = 1 
Query:    1 QGKYYVLLILTDGIINDMQKTIDTLVAASELPLSVLMVGVGDADFENMHILDADQERLKST 183
            + KY+VLLI+TDG+I D+Q+T+D LV A+++PLS+L+VGVG ADF+ M ILDAD++RL+ST
Sbjct: 1098 ERKYFVLLIITDGVITDLQETMDALVHAADMPLSILIVGVGGADFKEMEILDADKQRLEST 1158
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1011.14.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4DAY2_HETAK2.300e-32100.00Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A7S2UZU9_9STRA2.880e-2070.00Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S4DJM6_HETAK2.290e-1866.10Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A6P6X9Y1_COFAR4.260e-1869.49protein BONZAI 1-like isoform X2 n=5 Tax=Coffea Ta... [more]
A0A3Q7H069_SOLLC5.840e-1865.57Uncharacterized protein n=6 Tax=Solanoideae TaxID=... [more]
A0A0V0IF77_SOLCH6.830e-1863.93C2 domain-containing protein n=1 Tax=Solanum chaco... [more]
A0A7R9U4V3_9STRA8.020e-1863.79Hypothetical protein n=2 Tax=Pinguiococcus pyrenoi... [more]
A0A2G2WTY8_CAPBA1.050e-1765.57Protein BONZAI 3 n=1 Tax=Capsicum baccatum TaxID=3... [more]
A0A4D8YTK5_SALSN1.490e-1764.52Uncharacterized protein n=3 Tax=Salvia TaxID=21880... [more]
A0A1U8H5J3_CAPAN1.510e-1762.30uncharacterized protein LOC107873942 n=4 Tax=Capsi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1011contigH-akashiwo_Contig1011:300718..303256 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog4081.Solyc06g068840.2.1
PFAMsC2,Copine,Dev_Cell_Death
Model size191
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
GOsGO:0001101,GO:0003674,GO:0005488,GO:0005543,GO:0005544,GO:0005575,GO:0005623,GO:0005886,GO:0005911,GO:0008150,GO:0008289,GO:0008361,GO:0009266,GO:0009270,GO:0009415,GO:0009506,GO:0009628,GO:0009987,GO:0010035,GO:0010941,GO:0016020,GO:0016043,GO:0030054,GO:0032535,GO:0042221,GO:0043167,GO:0043168,GO:0044464,GO:0045793,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0055044,GO:0060548,GO:0065007,GO:0065008,GO:0071840,GO:0071944,GO:0090066,GO:1901700
Exons2
Evalue9.58e-19
EggNOG OGsKOG1327@1|root,KOG1327@2759|Eukaryota,37MKV@33090|Viridiplantae,3G9QY@35493|Streptophyta,44QC2@71274|asterids
DescriptionCopine
Cds size189
COG categoryT
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387050.7456741-CDS-H-akashiwo_Contig1011:300717..3008281681387050.7456741-CDS-H-akashiwo_Contig1011:300717..300828Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1011 300718..300828 +
1681387050.7557602-CDS-H-akashiwo_Contig1011:303178..3032561681387050.7557602-CDS-H-akashiwo_Contig1011:303178..303256Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1011 303179..303256 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1011.14.1prot_H-akashiwo_Contig1011.14.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1011 300718..303256 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1011.14.1

>prot_H-akashiwo_Contig1011.14.1 ID=prot_H-akashiwo_Contig1011.14.1|Name=mRNA_H-akashiwo_Contig1011.14.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=63bp
QGKYYVLLILTDGIINDMQKTIDTLVAASELPLSVLMVGVGDADFENMHI
LDADQERLKSTG*
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mRNA from alignment at H-akashiwo_Contig1011:300718..303256+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1011.14.1 ID=mRNA_H-akashiwo_Contig1011.14.1|Name=mRNA_H-akashiwo_Contig1011.14.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=2539bp|location=Sequence derived from alignment at H-akashiwo_Contig1011:300718..303256+ (Heterosigma akashiwo CCMP452)
CAGGGGAAGTACTACGTCCTCCTGATCCTCACGGACGGCATCATCAACGA
CATGCAGAAGACCATTGACACGCTGGTGGCCGCCTCCGAGCTGCCGCTCT
CCGTCCTGATGGTGGGGCGGGCGGAGGGGGGGGGCGTGCGTTGGGAGGCG
GCTTTGGAATAGGACATGATGAAGATGGCTGGTGGCAGCAGCATCAAATA
ATTCTGGGTTGTATAAGGCGCCATAAGTTTCACTGAGTATGTCAAAACAT
AGAAGATTTTTTTTTTTTCTTTCAAAAAAACTGTGGTGATAATGTTAGAG
CATGAATGTTTTTGGTGGTTGTGATTAGCTCGTCTCTTCCTTTTATTCAA
CAATGACATCCCCATGTACAGATCCACTCTTTGCACCTCTCCAACCGTGG
GGCTCTACCCCAGGGCACCGCATATCTGACTGGGCTGGGCCTTTTATTTA
ACAATGAAATCTCGCCGAGCCCTGAACCACTCTGAAGGTGGCGCCATGGC
TGGCCAGCTGAGCTTCGAGATCAAGCTAGTATCGATGCAAGACGGTGTTG
GCACAGCCCAGCCAGGCATAGTGTCCAGGGGTAGAGCCCCATGGCTGGAG
AGATGCGAAGTCTTGATCTGTAAGTTCGAATGTAAAATAGAACATAAAAT
CGGTAGTATGCTTTGCTAATTGCCATCAAAAATCTCGGTATTTTGGCTAT
TTGCTGTTTTACTCTTTATTCTTGATCATATACAGCAGGTGACAGACAGC
TCTTTCGACCCTTATTGGGGTCAACCACCAGTGTCCGGTAGCCAATATAT
ATATAAAAAAGCTACATGTTGTTTTGCCTCTCATCACAGGAGTGGTAATG
GTGGCCATGTCATCAGTAGGCTGTACCAGCACTTCAACTTTTATCCGTGC
AAGCACCAGGAGTTGATGTATATTTGCTAGCCGTTGGTTTTATGAGGAGC
TGGCATTTTTTGACTCAGCTACTAAATTTCCACTTTAAAATCATTTGTGT
TCAACCTTATTTGCCATTTTTTCATGATTACAAAGAACTTACACGGATTT
ATTTCATGTTGGTCCTTGTGCGTGCAATGTCACCAGAGCTGTTGGGTTTG
TGTGCGGTGCAATATAGCTTGGTGCTGGATTGAATACTGACAACATCAAA
ACAGTATTCGCAGTGATCACCGCTTTTTTCCAATCTGGCAATGATGAGTA
GCTGCAGGAGGTCATTATTTTAGTGGCGGGAAATCTGAGGAAGGCCACAG
TATATGTGATAGTCTCAGATGAGCCGGCATTATGTTACCCAAAAAGAGAT
TTCATTTGATCCATGTTTGTTGCGCTGTCGTGGTCCTGTCGTCTGACGAT
GCCAGCAGTGCAATACAATGGCGTTCATCATCGTCCCTGAAATATCTGCC
GTGATGATTTGCGCCCATGGCAGTGCAATACAAATCAGCGCTTCTGCAGA
GGTTGCCTTGCGCAACTCCAATTGAATGCAAGTAGTTCCAGGTGTTCACA
GAAGGGACTAGATGCTCAAACTGAGAGGTTCAAGCGGAGAGAATGGCTCT
CGCAAAACTTGAAGTTTTCAATGCAAGTCCAATGTAATTTTTTCTTGCGC
TCAAATACATTTGAATAAATGTTTAGGTGCTCAAAAGCCAAAAAATGGAA
CTCTGATTGCAATTTAAAAAGAGCCATATGTATGAATTTTCATGGCACTA
TGTGCCATCAGTTCATTGATGTACATGCGAAAAAATCATATGTAGGGCTT
TCAGCTATGGAAAAAAAACATTTTTTTTCTACGTTTTAGCATTTAAGTGA
CAAAAATTGCTTGTTGTAACTGTTACTACCTCTACCCATTATCGTCCATG
TGTGTACAGTTGTCTTCTAAGAGGAAAGTATTCTTCTACATGCTGCTGTT
GGAGAGCGAGGTGCCTTAGATCGTTCCATATGCCCGGAATTCTAGCTCTA
AAGCATCTTTTGACAGTTGCCAGGGAGTTGGGCGGAAGATGAACTTGTCT
CAGTTGATGAAGGTGCTGTGGGCGTGCTGCAGCCAGCCGAGCTGATCTCC
GAGGTTTTGGGGCAGAGGGATAACATCTCAAATTGATCATTTATCACCAG
TCAAAATATATTATTTAATCAAATGTATTTTGGCTTGATTTGGCAATTCT
TCGGCCGAAATAATACTTTTAATTTTTTGTCATATAGTATATGTTTAATT
TTGGCGAATCCACCGAAATGTATTTAATTTGGCCGAAAAACATTTCATTC
GAAAATCACTCCGTTGGTGGCGTCCTCCTTCATATGACAACACAATATAT
GGGTTCATACAAGAAGGGAAGGTTTTCTACACTCTGGGATGTCCAGAGAC
GTTCCACAGTCTACACCTTAAAAAAAAAGCACTTCAGCCTACAGTTGCTA
CTCCGTCTGCTCTAAAGCTTCCCCTTCGGCGTGTGCCCGCCCCGCCGTCG
CGCGGGGGCAGGTGGGCGTGGGGGACGCGGACTTTGAGAACATGCACATC
CTGGACGCGGACCAGGAACGCCTGAAGTCCACGGGGTGA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1011:300718..303256+

>mRNA_H-akashiwo_Contig1011.14.1 ID=mRNA_H-akashiwo_Contig1011.14.1|Name=mRNA_H-akashiwo_Contig1011.14.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=189bp|location=Sequence derived from alignment at H-akashiwo_Contig1011:300718..303256+ (Heterosigma akashiwo CCMP452)
CAGGGGAAGTACTACGTCCTCCTGATCCTCACGGACGGCATCATCAACGA
CATGCAGAAGACCATTGACACGCTGGTGGCCGCCTCCGAGCTGCCGCTCT
CCGTCCTGATGGTGGGCGTGGGGGACGCGGACTTTGAGAACATGCACATC
CTGGACGCGGACCAGGAACGCCTGAAGTCCACGGGGTGA
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