mRNA_H-akashiwo_Contig1011.10.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1011.10.1
Unique NamemRNA_H-akashiwo_Contig1011.10.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
[Close]
BLAST of mRNA_H-akashiwo_Contig1011.10.1 vs. uniprot
Match: A0A836CJ21_9STRA (Ribosomal protein L38 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ21_9STRA)

HSP 1 Score: 120 bits (302), Expect = 1.470e-34
Identity = 60/69 (86.96%), Postives = 63/69 (91.30%), Query Frame = 1 
Query:    1 MPKQIHDIRDFLQKARRTDAKSVKIKKSSGVVKFKIRCSRYLYTLCVTDAEKADKLTQSLPPGLTRKDI 207
            MPKQIHDIRDFLQKARR DAKSVKIKK++ V KFKIRCSRYLYTLCV D +KADKLTQSLPPGL RKDI
Sbjct:    1 MPKQIHDIRDFLQKARRKDAKSVKIKKTAEVTKFKIRCSRYLYTLCVADKDKADKLTQSLPPGLQRKDI 69
[Close]
BLAST of mRNA_H-akashiwo_Contig1011.10.1 vs. uniprot
Match: W2IQQ0_PHYPR (60S ribosomal protein L38 n=16 Tax=Peronosporaceae TaxID=4777 RepID=W2IQQ0_PHYPR)

HSP 1 Score: 120 bits (301), Expect = 2.090e-34
Identity = 61/69 (88.41%), Postives = 63/69 (91.30%), Query Frame = 1 
Query:    1 MPKQIHDIRDFLQKARRTDAKSVKIKKSSGVVKFKIRCSRYLYTLCVTDAEKADKLTQSLPPGLTRKDI 207
            MPKQI DIRDFLQKARR DA+SVKIKKS  VVKFKIRCS+YLYTLCVTD EKADKLTQSLPPGL RKDI
Sbjct:    1 MPKQITDIRDFLQKARRKDARSVKIKKSDKVVKFKIRCSKYLYTLCVTDTEKADKLTQSLPPGLQRKDI 69
[Close]
BLAST of mRNA_H-akashiwo_Contig1011.10.1 vs. uniprot
Match: M4BFU5_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BFU5_HYAAE)

HSP 1 Score: 120 bits (301), Expect = 3.590e-34
Identity = 61/69 (88.41%), Postives = 63/69 (91.30%), Query Frame = 1 
Query:    1 MPKQIHDIRDFLQKARRTDAKSVKIKKSSGVVKFKIRCSRYLYTLCVTDAEKADKLTQSLPPGLTRKDI 207
            MPKQI DIRDFLQKARR DA+SVKIKKS  VVKFKIRCS+YLYTLCVTD EKADKLTQSLPPGL RKDI
Sbjct:   20 MPKQITDIRDFLQKARRKDARSVKIKKSDKVVKFKIRCSKYLYTLCVTDTEKADKLTQSLPPGLQRKDI 88
[Close]
BLAST of mRNA_H-akashiwo_Contig1011.10.1 vs. uniprot
Match: A0A485KGK6_9STRA (Aste57867_4412 protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A485KGK6_9STRA)

HSP 1 Score: 119 bits (299), Expect = 4.220e-34
Identity = 60/69 (86.96%), Postives = 64/69 (92.75%), Query Frame = 1 
Query:    1 MPKQIHDIRDFLQKARRTDAKSVKIKKSSGVVKFKIRCSRYLYTLCVTDAEKADKLTQSLPPGLTRKDI 207
            MPKQI DIRDFLQKARR DA+SVKIKK++ VVKFKIRCS+YLYTLCVTD EKADKLTQSLPPGL RKDI
Sbjct:    1 MPKQITDIRDFLQKARRKDARSVKIKKTAQVVKFKIRCSKYLYTLCVTDTEKADKLTQSLPPGLQRKDI 69
[Close]
BLAST of mRNA_H-akashiwo_Contig1011.10.1 vs. uniprot
Match: A0A067CFE6_SAPPC (60S ribosomal protein L38 n=3 Tax=Oomycota TaxID=4762 RepID=A0A067CFE6_SAPPC)

HSP 1 Score: 119 bits (297), Expect = 8.530e-34
Identity = 60/69 (86.96%), Postives = 63/69 (91.30%), Query Frame = 1 
Query:    1 MPKQIHDIRDFLQKARRTDAKSVKIKKSSGVVKFKIRCSRYLYTLCVTDAEKADKLTQSLPPGLTRKDI 207
            MPKQI DIRDFLQKARR DA+SVKIKK+  VVKFKIRCS+YLYTLCVTD EKADKLTQSLPPGL RKDI
Sbjct:    1 MPKQITDIRDFLQKARRKDARSVKIKKTPQVVKFKIRCSKYLYTLCVTDTEKADKLTQSLPPGLQRKDI 69
[Close]
BLAST of mRNA_H-akashiwo_Contig1011.10.1 vs. uniprot
Match: F0Y0E5_AURAN (Ribosomal protein L38 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y0E5_AURAN)

HSP 1 Score: 117 bits (294), Expect = 2.450e-33
Identity = 60/69 (86.96%), Postives = 63/69 (91.30%), Query Frame = 1 
Query:    1 MPKQIHDIRDFLQKARRTDAKSVKIKKSSGVVKFKIRCSRYLYTLCVTDAEKADKLTQSLPPGLTRKDI 207
            MPK+I DIRDFLQKARR DAKSVKIKK+ GVVKFKIRCSRYLYTL V+D EKADKLTQSLPPGL RKDI
Sbjct:    1 MPKEISDIRDFLQKARRRDAKSVKIKKTKGVVKFKIRCSRYLYTLRVSDTEKADKLTQSLPPGLQRKDI 69
[Close]
BLAST of mRNA_H-akashiwo_Contig1011.10.1 vs. uniprot
Match: K3WQ98_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WQ98_GLOUD)

HSP 1 Score: 115 bits (287), Expect = 3.290e-32
Identity = 59/68 (86.76%), Postives = 62/68 (91.18%), Query Frame = 1 
Query:    4 PKQIHDIRDFLQKARRTDAKSVKIKKSSGVVKFKIRCSRYLYTLCVTDAEKADKLTQSLPPGLTRKDI 207
            PKQI DIRDFLQKARR DA+SVKIKK+  VVKFKIRCS+YLYTL VTDAEKADKLTQSLPPGL RKDI
Sbjct:    7 PKQITDIRDFLQKARRKDARSVKIKKADKVVKFKIRCSKYLYTLVVTDAEKADKLTQSLPPGLQRKDI 74
[Close]
BLAST of mRNA_H-akashiwo_Contig1011.10.1 vs. uniprot
Match: A0A1E7ETU4_9STRA (Ribosomal protein L38 n=2 Tax=Bacillariaceae TaxID=33852 RepID=A0A1E7ETU4_9STRA)

HSP 1 Score: 114 bits (284), Expect = 8.220e-32
Identity = 58/69 (84.06%), Postives = 60/69 (86.96%), Query Frame = 1 
Query:    1 MPKQIHDIRDFLQKARRTDAKSVKIKKSSGVVKFKIRCSRYLYTLCVTDAEKADKLTQSLPPGLTRKDI 207
            MPKQI DIRDFLQKARR+DAK VKIKK     KFKIRCSR+LYTLCVTDAEKADKLTQSLPPGL RK I
Sbjct:    1 MPKQITDIRDFLQKARRSDAKLVKIKKRDSQTKFKIRCSRFLYTLCVTDAEKADKLTQSLPPGLQRKSI 69
[Close]
BLAST of mRNA_H-akashiwo_Contig1011.10.1 vs. uniprot
Match: D0MYG1_PHYIT (60S ribosomal protein L38, putative n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0MYG1_PHYIT)

HSP 1 Score: 114 bits (284), Expect = 1.060e-31
Identity = 58/67 (86.57%), Postives = 60/67 (89.55%), Query Frame = 1 
Query:    1 MPKQIHDIRDFLQKARRTDAKSVKIKKSSGVVKFKIRCSRYLYTLCVTDAEKADKLTQSLPPGLTRK 201
            MPKQI DIRDFLQKARR DA+SVKIKKS  VVKFKIRCS+YLYTLCVTD EKADKLTQSLPPG T K
Sbjct:    1 MPKQITDIRDFLQKARRKDARSVKIKKSDKVVKFKIRCSKYLYTLCVTDTEKADKLTQSLPPGTTLK 67
[Close]
BLAST of mRNA_H-akashiwo_Contig1011.10.1 vs. uniprot
Match: A0A0P1ACU3_PLAHL (60s ribosomal protein l38 n=10 Tax=Oomycota TaxID=4762 RepID=A0A0P1ACU3_PLAHL)

HSP 1 Score: 112 bits (281), Expect = 3.390e-31
Identity = 57/64 (89.06%), Postives = 59/64 (92.19%), Query Frame = 1 
Query:    1 MPKQIHDIRDFLQKARRTDAKSVKIKKSSGVVKFKIRCSRYLYTLCVTDAEKADKLTQSLPPGL 192
            MPKQI DIRDFLQKARR DA+SVKIKKS  VVKFKIRCS+YLYTLCVTD EKADKLTQSLPPGL
Sbjct:    1 MPKQITDIRDFLQKARRKDARSVKIKKSDKVVKFKIRCSKYLYTLCVTDTEKADKLTQSLPPGL 64
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1011.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CJ21_9STRA1.470e-3486.96Ribosomal protein L38 n=1 Tax=Tribonema minus TaxI... [more]
W2IQQ0_PHYPR2.090e-3488.4160S ribosomal protein L38 n=16 Tax=Peronosporaceae... [more]
M4BFU5_HYAAE3.590e-3488.41Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
A0A485KGK6_9STRA4.220e-3486.96Aste57867_4412 protein n=3 Tax=Saprolegniaceae Tax... [more]
A0A067CFE6_SAPPC8.530e-3486.9660S ribosomal protein L38 n=3 Tax=Oomycota TaxID=4... [more]
F0Y0E5_AURAN2.450e-3386.96Ribosomal protein L38 n=1 Tax=Aureococcus anophage... [more]
K3WQ98_GLOUD3.290e-3286.76Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A1E7ETU4_9STRA8.220e-3284.06Ribosomal protein L38 n=2 Tax=Bacillariaceae TaxID... [more]
D0MYG1_PHYIT1.060e-3186.5760S ribosomal protein L38, putative n=1 Tax=Phytop... [more]
A0A0P1ACU3_PLAHL3.390e-3189.0660s ribosomal protein l38 n=10 Tax=Oomycota TaxID=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1011contigH-akashiwo_Contig1011:286511..286720 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog272952.HpaP805165
PFAMsRibosomal_L38e
Model size210
Max annot lvl4776|Peronosporales
KEGG koko:K02923
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.88e-35
EggNOG OGsKOG3499@1|root,KOG3499@2759|Eukaryota,3QGD7@4776|Peronosporales
Ec32 ortholog descriptionRibosomal protein L38e
Ec32 orthologEc-16_004840.1
DescriptionRibosomal L38e protein family
Cds size210
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387050.7163658-CDS-H-akashiwo_Contig1011:286510..2867201681387050.7163658-CDS-H-akashiwo_Contig1011:286510..286720Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1011 286511..286720 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1011.10.1prot_H-akashiwo_Contig1011.10.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1011 286511..286720 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1011.10.1

>prot_H-akashiwo_Contig1011.10.1 ID=prot_H-akashiwo_Contig1011.10.1|Name=mRNA_H-akashiwo_Contig1011.10.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=70bp
MPKQIHDIRDFLQKARRTDAKSVKIKKSSGVVKFKIRCSRYLYTLCVTDA
EKADKLTQSLPPGLTRKDI*
back to top

mRNA from alignment at H-akashiwo_Contig1011:286511..286720-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1011.10.1 ID=mRNA_H-akashiwo_Contig1011.10.1|Name=mRNA_H-akashiwo_Contig1011.10.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=210bp|location=Sequence derived from alignment at H-akashiwo_Contig1011:286511..286720- (Heterosigma akashiwo CCMP452)
ATGCCGAAGCAGATCCACGATATCAGAGACTTCCTTCAGAAGGCTCGCAG
AACCGATGCCAAATCTGTGAAGATTAAGAAGTCTTCCGGCGTGGTGAAGT
TCAAGATCCGCTGCTCCCGGTACCTGTACACCCTTTGTGTGACAGATGCA
GAGAAGGCCGATAAGCTGACCCAGTCCCTGCCCCCTGGACTCACCAGAAA
GGACATTTGA
back to top

Coding sequence (CDS) from alignment at H-akashiwo_Contig1011:286511..286720-

>mRNA_H-akashiwo_Contig1011.10.1 ID=mRNA_H-akashiwo_Contig1011.10.1|Name=mRNA_H-akashiwo_Contig1011.10.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=210bp|location=Sequence derived from alignment at H-akashiwo_Contig1011:286511..286720- (Heterosigma akashiwo CCMP452)
ATGCCGAAGCAGATCCACGATATCAGAGACTTCCTTCAGAAGGCTCGCAG
AACCGATGCCAAATCTGTGAAGATTAAGAAGTCTTCCGGCGTGGTGAAGT
TCAAGATCCGCTGCTCCCGGTACCTGTACACCCTTTGTGTGACAGATGCA
GAGAAGGCCGATAAGCTGACCCAGTCCCTGCCCCCTGGACTCACCAGAAA
GGACATTTGA
back to top