mRNA_H-akashiwo_Contig101.5.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig101.5.1
Unique NamemRNA_H-akashiwo_Contig101.5.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig101.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig101contigH-akashiwo_Contig101:304317..305485 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size459
Hectar predicted targeting categoryother localisation
Exons2
Cds size351
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387049.0044174-UTR-H-akashiwo_Contig101:304316..3043901681387049.0044174-UTR-H-akashiwo_Contig101:304316..304390Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig101 304317..304390 -
1681387049.0373173-UTR-H-akashiwo_Contig101:305451..3054851681387049.0373173-UTR-H-akashiwo_Contig101:305451..305485Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig101 305452..305485 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387049.0188382-CDS-H-akashiwo_Contig101:304390..3045821681387049.0188382-CDS-H-akashiwo_Contig101:304390..304582Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig101 304391..304582 -
1681387049.0289896-CDS-H-akashiwo_Contig101:305292..3054511681387049.0289896-CDS-H-akashiwo_Contig101:305292..305451Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig101 305293..305451 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig101.5.1prot_H-akashiwo_Contig101.5.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig101 304391..305451 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig101.5.1

>prot_H-akashiwo_Contig101.5.1 ID=prot_H-akashiwo_Contig101.5.1|Name=mRNA_H-akashiwo_Contig101.5.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=117bp
MHVASLLIGSTVGAGGYLYISNLVSERNDRISGALVYKGLPTSQTAFGSL
TSAVYAKAKELPKNRERAWSQAQEHVEWCYFFCEGLNLQPNCRRQKEVKD
EGCSGKVKGSHHHYDY*
back to top

mRNA from alignment at H-akashiwo_Contig101:304317..305485-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig101.5.1 ID=mRNA_H-akashiwo_Contig101.5.1|Name=mRNA_H-akashiwo_Contig101.5.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1169bp|location=Sequence derived from alignment at H-akashiwo_Contig101:304317..305485- (Heterosigma akashiwo CCMP452)
ATAATCGAGATTGAGATTGAAAAGAAGTATCGAGATGCATGTAGCTTCCC
TTTTGATCGGCTCCACTGTGGGCGCTGGAGGGTACCTTTACATATCCAAT
TTGGTCAGTGAACGAAATGATAGAATATCAGGTGCACTAGTCTACAAAGG
ACTTCCTACCAGTCAAACAGCGTTCGGGTCCCTGACATCTGCGGTAAGCA
ACCCTGTTGAAGAAAAAACGCAGGAAAAGTTAAATTCTGTGTTCTTTTGG
TTTGATTCTTTGCCTATATTTCATTGGCATTTTTTTTGCAACTTGTCTCC
GGCATTTTTTTTTTTCCCCAGCACAGATAATGCTTTCTTCCTCCTCCTTC
GTCGTCATCATCATCATCAAAATGGCTGCCTCTACCAATTAGGCGACGGT
GTGACCACAAACCACCGCCCTTCAACCCTCAGCATGCCATAGTTTAGTAA
TAAAATCTCTGAAAAGCGACCAACTTGGGCACATGCAGCCCAGTTTCACA
ATGATCAGTAGCGAAGTGGCCAAGGCAAAGCAACAGTCATCAAATCAATA
ACAACAAAAAATGATGAACAAAAAAAAAAAAGTGGTTGTCTAAAACTTCT
TTTCTGTTTCTGTCTGCCCCATCTTCTATCCCATTCCCTCCGATGACCTA
AAAAGCGCCTGGCACAACATCCTTGACCTTCTTTTTTTTTTTTTTTTTTA
GCCGACGTCTTCCTGCACTTTTTCTTGTTCGCGGTCTTTCTGCGCCCTAC
TGCTTCCAGACTGTGTGCTTCCCTGTCAAGAACTGGAAGATATATTAGCT
TCATATTCCAGTCAAGCGAAAAGAGCCACACTCTATCAGTATTGAAAAGG
CGGTACTATTAGCCTGTATATGCATGAACTTCTCGCTTCTTCTGTTTCTC
CAGGTTTATGCAAAGGCAAAGGAACTGCCAAAAAACCGAGAGCGAGCTTG
GAGCCAAGCTCAGGAGCACGTGGAATGGTGCTATTTTTTCTGTGAAGGAC
TCAATCTCCAGCCTAATTGCAGACGCCAAAAAGAAGTAAAAGATGAAGGA
TGCTCGGGGAAAGTCAAAGGGAGTCATCATCATTACGATTATTGAATTCG
TGGCCAATCATTATTATGTATTATGTCTTTTTTTGACTTATCGTACACTA
CTACCATTGTTTTTCTTCG
back to top

Coding sequence (CDS) from alignment at H-akashiwo_Contig101:304317..305485-

>mRNA_H-akashiwo_Contig101.5.1 ID=mRNA_H-akashiwo_Contig101.5.1|Name=mRNA_H-akashiwo_Contig101.5.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=351bp|location=Sequence derived from alignment at H-akashiwo_Contig101:304317..305485- (Heterosigma akashiwo CCMP452)
ATGCATGTAGCTTCCCTTTTGATCGGCTCCACTGTGGGCGCTGGAGGGTA
CCTTTACATATCCAATTTGGTCAGTGAACGAAATGATAGAATATCAGGTG
CACTAGTCTACAAAGGACTTCCTACCAGTCAAACAGCGTTCGGGTCCCTG
ACATCTGCGGTTTATGCAAAGGCAAAGGAACTGCCAAAAAACCGAGAGCG
AGCTTGGAGCCAAGCTCAGGAGCACGTGGAATGGTGCTATTTTTTCTGTG
AAGGACTCAATCTCCAGCCTAATTGCAGACGCCAAAAAGAAGTAAAAGAT
GAAGGATGCTCGGGGAAAGTCAAAGGGAGTCATCATCATTACGATTATTG
A
back to top