mRNA_H-akashiwo_Contig101.31.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig101.31.1
Unique NamemRNA_H-akashiwo_Contig101.31.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
[Close]
BLAST of mRNA_H-akashiwo_Contig101.31.1 vs. uniprot
Match: A0A7S3Y2P7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y2P7_HETAK)

HSP 1 Score: 124 bits (310), Expect = 1.010e-33
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 1 
Query:    1 TNYLGSVLPAQHLQLLTLDEDAYLAGLYADGMRGGAPAPPPERSYDWLVEQNEISILG 174
            TNYLGSVLPAQHLQLLTLDEDAYLAGLYADGMRGGAPAPPPERSYDWLVEQNEISILG
Sbjct:  131 TNYLGSVLPAQHLQLLTLDEDAYLAGLYADGMRGGAPAPPPERSYDWLVEQNEISILG 188
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig101.31.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3Y2P7_HETAK1.010e-33100.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig101contigH-akashiwo_Contig101:1689811..1696620 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size260
Hectar predicted targeting categoryother localisation
Exons2
Cds size258
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387049.239366-CDS-H-akashiwo_Contig101:1689810..16899341681387049.239366-CDS-H-akashiwo_Contig101:1689810..1689934Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig101 1689811..1689934 +
1681387049.2497163-CDS-H-akashiwo_Contig101:1696486..16966201681387049.2497163-CDS-H-akashiwo_Contig101:1696486..1696620Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig101 1696487..1696620 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig101.31.1prot_H-akashiwo_Contig101.31.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig101 1689811..1696620 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig101.31.1

>prot_H-akashiwo_Contig101.31.1 ID=prot_H-akashiwo_Contig101.31.1|Name=mRNA_H-akashiwo_Contig101.31.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=86bp
TNYLGSVLPAQHLQLLTLDEDAYLAGLYADGMRGGAPAPPPERSYDWLVE
QNEISILGVPHHQKMRRRNGGMTVLPFQTRSEDDW*
back to top

mRNA from alignment at H-akashiwo_Contig101:1689811..1696620+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig101.31.1 ID=mRNA_H-akashiwo_Contig101.31.1|Name=mRNA_H-akashiwo_Contig101.31.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=6810bp|location=Sequence derived from alignment at H-akashiwo_Contig101:1689811..1696620+ (Heterosigma akashiwo CCMP452)
ACGAACTACCTGGGCTCCGTGCTGCCCGCGCAGCACCTGCAGCTGCTGAC
CCTGGACGAGGACGCCTACCTGGCCGGGCTGTACGCCGACGGGATGAGGG
GGGGCGCGCCCGCGCCGCCGCCGGGTGGGGCGCCACCCCCCCCCCTCATG
AGATTCTAAGATAGAGCTTCTTCTCCTGTATGAGGGACAGGATGATGATT
TATCATTAATTTATAAAAATCCCTTTACATCAAAACCTACAAGGCCAAGC
AGGGAAGTAGCCTGATGAACCTGGAGAAAGGAGCTCGGATCGATCCATGC
TGGGGTGCACTCAATGACCTGATCCTTGAGGAAGGAGAGAGAAGGGTGAA
GGCTTGGCAGAAATGGGTGAGGAGGTTTGGCAAGAAGAAGGTGGGTGATG
GCGAGGGTGGAAGGGTTTcTTGGAGCCAAAGGCCACGACTCAGGAGGAGT
GGCAGGCTGATGAAGAAGCATCAGATCTCGCATCCGGACGAAGAAGACCC
GGGCGCAATCTGCGCGCTCCTCgGGGCAATGAAGTTGAACGTCTGGGATG
GCAAGTAAGATTATTCCATCAGTCTGGAACAAGAAGAGGAAAAGTCAGGT
GGCAAGGGTCGGGCGAAGAGGGCAAGGAAGAGGAGGGTGCGTGTTGAAAG
ACACTGAGGAACACAGACTCGGCACCGGTTATGCCCAGGGGGCATACTTG
ACGTCTACTTCTGGGAAATGAGAAGAGGGATAATCTCATTCCAGGCTCCT
CGTACCTCGTTGTGTTGATGATTGTTCAACAGTGCAAATCTCATGATGTA
TTTGTGTTTTCCATTTCTTTTCTTTTTTTTCTGTTTTGTGCTGTTGGCAG
CGGGGATGGAAGGAGGAGGAAGAGGAGAGAGGAGGGGTGTAACCGTTACC
GTTTTTTCTCATCGGTTATTGGTGTTGTTGTGCTGGCTGGACCACCTTCA
TCATTACCTTGATGGGACCTAGTTGGAGGTTGGCCAACTTGGTGACTCTA
TGAAGAAGGTATGACTTCATGTCGAAGCGTCGGGAGCTGGAGAGGCGTAT
CATTTTCTAGAAGATCAAATAATTGTTCCGTACCATAACTGATCACTTTC
ATTTCAATTATTCATTTATATTAATGTGGTACAGCTACTTGGAAAACTTA
AGGAGCAAGGTCCTGGCCTTCATATGAGAAGTATCTGGATGGATCTTTTT
CAACAAATTAAAATAATCGTCATATGATCATGACAACATTCGTAAAAATT
GAGTGGATTGATAGTTTCCAGCTTGTCGAGACCAGATTCAGTGTTACCTA
GAACTTACTCGGCACATTTTTTTTTAATGTCTGACTAGAGATAGACTGTC
ATCAGTGATTAATCAGTTTGGCATCCCCAGCCCCATCATTGCAGCCGGTA
GATGTGAAAATTTTTGTTGAAAAACAGCTACACTACAGGCCATCAATACA
AAGGACTCAAGTTTCGGCCAATTCCAACCCACCACCAGTAGAGGCTGGTG
GCTGTTCGTCAATCTTGCTGGATGGGAATGATGAATAAAAATACTACTTG
ACGGTGGTTGCTGCTGTCTCCACCTTCATCAGCTGGTTATAATGCTGCTG
TCCCCAAGATAAAATTCTGAGGAGGAAGAAAGCAGTTCTCCTGCATGTGC
AAATCCCACCGCTTTATGCACAAGATTCTACACTGCCGTTATAAGTTCAC
CTTTCTATGTAGTCGCCGCCTTTTTCATTTGAATTTCCGTTGTTCCGACT
GCTTTACGCAGATTTGAAAAAGTGCACAAAAACCAGCTTTCCAAGATCTG
GCCGTCTGTTTCTTCTCCCATTTGTCCCCAGATGTGGGTAAACTTGGCAC
CAAATAGTGTAATGATGGATAAGAGACAACCGGCTCTGTAATATATTTCT
GGGAAGTGGCCCGTTCGTCAGGGTAGGATCCGTATGAGCAAGGGCCCGCC
TTCGTCGCAGTTATACCCTGTAGGCCTCCACCTCAATGAAGATAAGTGGC
CAAATACTGGGGAGTCGCGTCTGGGCAGTGTGTTGATCCAGTTGATTGAT
ATTTTCCAGCTTGTCGAGGCCACATTTATAGTTGCCTAACACTTACTTGA
TGCATCTAGACAGACGTTTAAATGCGTCAAGTAATAAGTTTTAGGTAATA
GTTTTTAAACATAATGATTTTATAATCCATTTGGCAGGCAGACATTCAGA
GGCACTGGCGGAGGGTCGTACCCTTCCTCGGAGCTTTGAGCATTTCCCTG
TTTCGAACTGTCGTTCCGTGATCTCGAGACTGTGTTTCGGGTCACCGATC
AAAATGGGTACATCCGTGAAATCGTTATGGTAGACTTGAGTAGTTGTATT
ATGAAATGGCAAACAGAAGTGGAAGGGTCTGCTTATAGAAGCTAGGGGTA
CTGCCCCAAAAGTGATTTGAAAGGTTCGACTTGAAACTAAAATTAACATC
ATCATCATCATCATATATATATAGAGAGAGAGAGAGAGAGAGAGAGAGAG
TTAAATTTAAACAAAACAACCTACGCCTTGCATCTATGCAGATGTCCCTG
TGGTAATATACCAAAACCTACACATGAAATCCCAAAACCCAAAACCCAAA
TCATCAATATATATATATATATATATATATATATATATTATGTATTGATT
TGGGTTTTGGGATTTCATGTGTAGGTTTTGGTATATTACACAGGACATCT
GCATAGATGCAAGGCGAGGTTGTTTTGTTTAAATTTAACTCTCTCTCTCT
CTCTCTATATATATATATATTTAATATTAAATTTCAACCAAAACAATCCA
CGCCTTGCATCTTCACATACCTACTATGACAAACTAGCTAATCTGCATAC
TACAATAATAATAATATATACCTACCTACACCCACTTCTTCTTCAAGCTG
CAGTACCCGCtTAACGGTCCTCACCAGCTTCTCTCTTGATCCTCCACACC
AGACCTGCCTCTTCCAGGAGCCAGGAAGATGGAATCATGAAGCCAAGTTC
GCCATATGGACCTCTCTCCCTCTCATGAAGTGCCACAGCTTCATCAATCA
CCTCATGAAGGATCGAGTGAACCAAGCTCCCAACAGTCCCATCTTTTCTT
GCTTCTTTCTCTAGAACCAAAGTCAAGTCATGTAGACCCCCAATCACCTC
AGGAATCTGTGAAGAATTTGCAGTCACCAAGCCTCCGCTACTACTTGCAT
TCTCCTGTTCCAGGCAAAGGGAAAAGGAAGCTCCCGAGCGACCAGCAGCC
AGAGTGACTGATGGCTGTGTTTCCACGTGCTCGGTGTATCTATTGTGAGG
TGTTGGATTTAACAGAAAAGCCGCTTCCATCATCAGTGAGTATAGTAGCT
CCCTTCGCCAAAGAGGCGATATTAGTATGTCAAAAGTGTTAAAATTATTA
CAACAAGATATGACGTGGACAGCATTGTTCCTGGCATACCACCAGCCGAG
ACTGGTAGCTGGCCTTCATCAACACGCCTTGTCAGTAATAATGAACCAAA
TGAAGATGGGTAGTGGTGTGAAGAGGTGGGATCATCGCGCAGCAGAAAAA
CAGCAGCGGCAGCAGCAGAGGAGTACCAACTGCCGCCTTTTGGCCTTCAT
GTTCACGCTAGCTTGTTCACTGAAAACAGGTATAGACTTTAGGAAACATT
CTGCTCTCCTTCTAATTCATGTTCACTACTGATATGCGCATCATCATCAA
AGCCAAACACAAGTGCCGGCCATGACCCATAGAGTAAATTCATGATCTGA
AAATGTGAATAGATAGTTCCAAAACATAGCTCAACTGTCATTCAGTAGAT
TACCGGGTCTGCCGAAACAGAATTGGGGCCAGGTTGACTGGTTTTTCACC
GGCCTATACCACGTGAAGAGTAAAACCCGCAAGGTTGCAAGTCTCAACTC
GTCTGGCAAATCCCCATGGTGGGCAGGATAGAACCCACCACGCACCAATT
GCTTTTTGTTGGTACCGCGCAGGAGATCTGTTACCCACCGTTGTAAGCAA
CGGTAGTTGATACCTTTGTTATTTGATTTTCGGCACTAGCGCCTGAAAGC
GCCCTTCGATCACCGCTCTCAGTTGAAGCGTCAGCAGTGAAATTTGCTCC
AGGCAAGATTACCCAGCCAGCGTCAGTCAATGAAGCCCACCAGTAGGGGT
CAAGGAAGCCAAATTGCATTTATATTGCATCTTGGTATTTGTGTTAGTTT
ATCTTGGGGTAATGGCGATAGCGACTTCAACAGCAGATGGCGATAATTTA
GAATTGACTTGCAGTGTTCTTCTGGTGAAAGAATATTTGAAATATAGAAT
AAATGAAGTCTGGTGATTGCTATTTATGGCAGCTATCATTCATTTCCCAA
CTTTGCCCCCCGCTGCTCCTCAGATTCATTAATGTTCTTTTAGTAGCATA
TCATAATATCTACCAATGATAAACAATAACAACAACATAATGATGAATGA
ATTAATGAAAGGAGAGAAAAATCCTGCATTGAGGCACTGCAAGGTCAAAT
GCAGCCTCTGCGGTGCTCGGCGGGTGTGGTGGAGCCTGCACTGGGTGCTG
CGGTAGGGCTGGGCAGGTGATTTTCCAGATTCTCTTGTTTTTCAGTGATG
GAGGCTGTGCTCGGCAAGCACTGCACGTTCGTTCTGTGTGACTGGTGTTG
TTTAATGTGCTGTTTAACCCAACTGATATTGGTTCCTTGGATGCAAAAGT
TAACGAGCAACGCCCTTGACTTGGAAGGTGTGTAAACCTGGGCCAAGTGT
GCCCTGATGATGGTCCTTTTAATCAGTGCCTGACTACTTTGTATTGAGAC
TTCGGTTTTTTGGAACATTGAAGGCAACGCCCTTGACTTGGAAGGCTGCC
CGAACCTGGGTCAGGTGTACCGGCATTCGAGACTCTAACAAGTATGGAGG
CAAGCCATGAAGACAAGGTAACGGATTATAGGCATCTGAAGCTACTACGA
CGGGATCCAAACAAGATGGACATCAGACGTCTTCAGAGTAGTCACTTTGT
GGACCAGAAAACCCCCCATTTGCTGGAGTCGTGTCTCTGTCCTTCAGGAT
CTCTCCTGAGGAAGCGGAAGAATGTATACTCAGCATATGTGAACCGAGCT
CGGAGGCGCAGCTGCCGCCCCTGATTATCCTCTCAACCTGCTGCAGCGAG
AGCACCGCACTGTTTCAGCACAGAGGAAGCGTGAATGGGCTTCTGGCAAC
TGGAGCACCCTAGATGGGGCTACTGAGCCAAGGGGGGGAGCTATTACCAC
CGGCACCACCTGCACCTGCACCTAGAGGGAGCTGCTGGGGCCTAGGGTGA
GAGCCACTAGATCTCAAAGCTAGTAGGGGAGCATTCGGAATTCAGACAAC
TGGAGGCACTGGTGGAGGGCCGTCCCCTTCCTCGGAGCTTTGAGTATTTC
CCGGTTCGAACTGCCGTTCCGTGATCTCGATACTGTGTTTCGGGTTACCG
GTGAAAACGGGTACATCTGTAAAATCACTAGTTGTGCCTAATTGCATTTC
TAATTCATCTTGGTATTTGTGTTGGTTTATCTTGGGGTAATGGCGATAGC
GACTTCGACTGCAGATGGCGATGATTTTAAAATTGACTTGCAGTGTTCTT
CTGGTGTTGGAATACTTGGATTAGAATAAATGAATCCTTATGGTTCCTAT
TTATCCAATGGAGGAGTTGTTTTCTCTTCTCATTCGTTGTCATGTTGCTG
TTGTTATTGTTATCACTGGTATGATTATGAGGACGGTACACCCAGCTGGG
TGCTGGGAGGCTTTGAGAGCGCAGAGGCAGAGCAAGAGCACTTTGAGCGG
TGTCAGCAGAAGATGAGGCGGCAGGGAGAGCAGGTGCAGAGGATGGGAGA
GCAGATGTTGGAGCACATCAGGGAGGCTAGGAAATATGCTGCGAGGACCG
AGGAATTGGAGCGGGAGATTGAGCAACGGCGATGGGAAGAAGTGTAAGTT
GTGGTTGGGAAATAGGGGAAAGCTGGTTATGGCAGGGCATGTGGTGGTAA
ATAGGCTGGCTTTTTCTGAATGTTTTGGTGATGTATAGGAGTGAGAGGTG
GAACCTAGATGTAGCAGGGTCCGCATATGGAGGCCGGGACTTCGGTCCTT
GTAGTTATCCAAGAGGCTGGACCTTAAATAAAATAAAATCATCATCATCA
TCATCACTGGTATGATGATGATGATGTTAATTTTAGTTTTCGGTCTAGTC
TTTCAAACCGCTTTCGGGGCAGAACCCCTAGCTTCTACAAGTAGACCCTT
CCACCTCAGTCTGCCATTTCTCAATACCACAACTCAATCATCATACAAAC
ACAAGAACAATTCACTCACGTACACTTCTCTCCAACCATGCTTCTGAACT
CCTCAGAAATCAAGACGCCCCGTTCGCTTCACAAACCTTGCCAGCCTATG
TAGATATTATGAATTTGCCACTTATAGGAGAACATCAGGGAATCAGAGGA
GCAGCAGGGGGGCAGGTTGGGAAATGTGGTACGACATGGTGGTGCCCTTT
ATTATCACTTTGAGGTGAATGATAACTATATATACCATGAGAATAATAAG
AAATTGTTGATTGGAGGATTTCTCGACCTGTTGAACCCTCAACAAGATTA
TTGTAATCATACATTGATAATATCATAATATATCATACCACCACCCCTGC
TTGCTATCTTGTGCTGTTGTGCACAGAGCGCTCCTATGACTGGCTTGTGG
AGCAGAATGAGATCAGTATTTTGGGGGTACCACATCATCAGAAAATGAGG
AGGAGGAATGGGGGCATGACAGTTCTTCCTTTTCAGACGAGGAGTGAAGA
TGACTGGTGA
back to top

Coding sequence (CDS) from alignment at H-akashiwo_Contig101:1689811..1696620+

>mRNA_H-akashiwo_Contig101.31.1 ID=mRNA_H-akashiwo_Contig101.31.1|Name=mRNA_H-akashiwo_Contig101.31.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=258bp|location=Sequence derived from alignment at H-akashiwo_Contig101:1689811..1696620+ (Heterosigma akashiwo CCMP452)
ACGAACTACCTGGGCTCCGTGCTGCCCGCGCAGCACCTGCAGCTGCTGAC
CCTGGACGAGGACGCCTACCTGGCCGGGCTGTACGCCGACGGGATGAGGG
GGGGCGCGCCCGCGCCGCCGCCGGAGCGCTCCTATGACTGGCTTGTGGAG
CAGAATGAGATCAGTATTTTGGGGGTACCACATCATCAGAAAATGAGGAG
GAGGAATGGGGGCATGACAGTTCTTCCTTTTCAGACGAGGAGTGAAGATG
ACTGGTGA
back to top