mRNA_H-akashiwo_Contig101.30.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig101.30.1
Unique NamemRNA_H-akashiwo_Contig101.30.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig101.30.1 vs. uniprot
Match: A0A7S3XSB7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XSB7_HETAK)

HSP 1 Score: 125 bits (314), Expect = 5.640e-34
Identity = 64/65 (98.46%), Postives = 64/65 (98.46%), Query Frame = 3 
Query:   30 MVDRPLLARGVVSSKANRGTGTSFLHIRGGSNSDDKMVDAGNGGEQTEETRIPAKIKVAVSTGVG 224
            MVDRPLLARGVVSSKANRGTGTSFLHIRGGSNSDDKMVDAGNGGEQTEETRIPAKIKVAVSTG G
Sbjct:    1 MVDRPLLARGVVSSKANRGTGTSFLHIRGGSNSDDKMVDAGNGGEQTEETRIPAKIKVAVSTGGG 65
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig101.30.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3XSB7_HETAK5.640e-3498.46Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig101contigH-akashiwo_Contig101:1660718..1661251 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size295
Hectar predicted targeting categoryother localisation
Exons3
Cds size207
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387049.1684096-UTR-H-akashiwo_Contig101:1660717..16607461681387049.1684096-UTR-H-akashiwo_Contig101:1660717..1660746Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig101 1660718..1660746 +
1681387049.2109525-UTR-H-akashiwo_Contig101:1661192..16612511681387049.2109525-UTR-H-akashiwo_Contig101:1661192..1661251Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig101 1661193..1661251 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387049.1796055-CDS-H-akashiwo_Contig101:1660746..16608011681387049.1796055-CDS-H-akashiwo_Contig101:1660746..1660801Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig101 1660747..1660801 +
1681387049.1914167-CDS-H-akashiwo_Contig101:1660913..16610291681387049.1914167-CDS-H-akashiwo_Contig101:1660913..1661029Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig101 1660914..1661029 +
1681387049.2014425-CDS-H-akashiwo_Contig101:1661156..16611921681387049.2014425-CDS-H-akashiwo_Contig101:1661156..1661192Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig101 1661157..1661192 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig101.30.1prot_H-akashiwo_Contig101.30.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig101 1660747..1661192 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig101.30.1

>prot_H-akashiwo_Contig101.30.1 ID=prot_H-akashiwo_Contig101.30.1|Name=mRNA_H-akashiwo_Contig101.30.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=69bp
MVDRPLLARGVVSSKANRGTGTSFLHIRGGSNSDDKMVDAGNGGEQTEET
RIPAKIKVAVSTGVGQDL*
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mRNA from alignment at H-akashiwo_Contig101:1660718..1661251+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig101.30.1 ID=mRNA_H-akashiwo_Contig101.30.1|Name=mRNA_H-akashiwo_Contig101.30.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=534bp|location=Sequence derived from alignment at H-akashiwo_Contig101:1660718..1661251+ (Heterosigma akashiwo CCMP452)
GCTGCTTCTATCTTCATATATGTGCTAGAATGGTAGACCGACCTCTTCTA
GCTCGTGGAGTAGTCAGCAGTAAAGCTAATAGAGGTACGCAGACATCATA
CAGTTGGTCGATCATCTTCGCCAGTGAAGGTTCAACTGTAAAAAGCATGT
GGAGTAAGTTCCTGCATGATTACTTTGCCTTCTTAATTTTCCTAAGGCAC
AGGAACCAGCTTCTTGCACATCCGAGGGGGGTCAAATTCTGATGACAAGA
TGGTGGACGCCGGAAATGGCGGCGAACAGACTGAAGAAACTCGTATTCCT
GCCAAAATAAAGGTAATTGACCAGACATGCCAGATGGCCAGTTTATTGTA
ACATAAATCAATGCCCCCCGCGCGCATTCAATCCTTATTCCAGGCCCACG
TTCTAACTCTTTCAAATGATTCCATGATCCTTTTACCAGGTTGCTGTCAG
TACTGGGGTGGGACAAGATTTATAGACCAGAGATGCCAAATTGAGCTGCC
GGGAACTGCAACATTATCTGACCTAAAGAAAGAA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig101:1660718..1661251+

>mRNA_H-akashiwo_Contig101.30.1 ID=mRNA_H-akashiwo_Contig101.30.1|Name=mRNA_H-akashiwo_Contig101.30.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=207bp|location=Sequence derived from alignment at H-akashiwo_Contig101:1660718..1661251+ (Heterosigma akashiwo CCMP452)
ATGGTAGACCGACCTCTTCTAGCTCGTGGAGTAGTCAGCAGTAAAGCTAA
TAGAGGCACAGGAACCAGCTTCTTGCACATCCGAGGGGGGTCAAATTCTG
ATGACAAGATGGTGGACGCCGGAAATGGCGGCGAACAGACTGAAGAAACT
CGTATTCCTGCCAAAATAAAGGTTGCTGTCAGTACTGGGGTGGGACAAGA
TTTATAG
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