mRNA_H-akashiwo_Contig101.26.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig101.26.1
Unique NamemRNA_H-akashiwo_Contig101.26.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig101.26.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig101contigH-akashiwo_Contig101:1163613..1164008 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size153
Hectar predicted targeting categorysignal peptide
Exons2
Cds size153
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387049.122286-CDS-H-akashiwo_Contig101:1163612..11636721681387049.122286-CDS-H-akashiwo_Contig101:1163612..1163672Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig101 1163613..1163672 +
1681387049.1324472-CDS-H-akashiwo_Contig101:1163915..11640081681387049.1324472-CDS-H-akashiwo_Contig101:1163915..1164008Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig101 1163916..1164008 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig101.26.1prot_H-akashiwo_Contig101.26.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig101 1163613..1164008 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig101.26.1

>prot_H-akashiwo_Contig101.26.1 ID=prot_H-akashiwo_Contig101.26.1|Name=mRNA_H-akashiwo_Contig101.26.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=51bp
LLGNLGAWFILVMARQGQQQARDQSTLVVSGVVAAVFYGAGSAYWGVGDP
L
back to top

mRNA from alignment at H-akashiwo_Contig101:1163613..1164008+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig101.26.1 ID=mRNA_H-akashiwo_Contig101.26.1|Name=mRNA_H-akashiwo_Contig101.26.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=396bp|location=Sequence derived from alignment at H-akashiwo_Contig101:1163613..1164008+ (Heterosigma akashiwo CCMP452)
CTGCTTGGCAATTTGGGGGCCTGGTTCATCCTAGTAATGGCCCGGCAGGG
TCAGCAGCAGGTTAGCCACTTTGTTTGTTTATTCTTTCTTTTTCTTTGTA
TATAGTATAGTTTTTCTTTATTTCTTTTCTTTCTTTTTTCATTCTTTCTT
TTTTCTTTCTTTGGAGTATATATTTTCTCCTTTTCTTTCTCTCAAATTTT
CATGCAATATGCTTCTCTTGCATCCTGAGCCATGATAATTGTCTTCTTGC
ATGTATACCATGGCATGCATGTGAGCACTTTGTTGGGCACAATGCATCTG
CAGGCCCGCGATCAATCAACGCTGGTCGTGAGCGGGGTGGTAGCAGCGGT
GTTCTACGGCGCCGGGAGCGCGTACTGGGGCGTCGGCGACCCGCTG
back to top

Coding sequence (CDS) from alignment at H-akashiwo_Contig101:1163613..1164008+

>mRNA_H-akashiwo_Contig101.26.1 ID=mRNA_H-akashiwo_Contig101.26.1|Name=mRNA_H-akashiwo_Contig101.26.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=153bp|location=Sequence derived from alignment at H-akashiwo_Contig101:1163613..1164008+ (Heterosigma akashiwo CCMP452)
CTGCTTGGCAATTTGGGGGCCTGGTTCATCCTAGTAATGGCCCGGCAGGG
TCAGCAGCAGGCCCGCGATCAATCAACGCTGGTCGTGAGCGGGGTGGTAG
CAGCGGTGTTCTACGGCGCCGGGAGCGCGTACTGGGGCGTCGGCGACCCG
CTG
back to top