mRNA_H-akashiwo_Contig101.16.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig101.16.1
Unique NamemRNA_H-akashiwo_Contig101.16.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
[Close]
BLAST of mRNA_H-akashiwo_Contig101.16.1 vs. uniprot
Match: A0A7S4D7N3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D7N3_HETAK)

HSP 1 Score: 99.0 bits (245), Expect = 9.100e-23
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 1 
Query:    1 LHFSLNPFSMLSQLLGPRICCYLSTLFCCFILVVFAFYMGPTLISNLLV 147
            LHFSLNPFSMLSQLLGPRICCYLSTLFCCFILVVFAFYMGPTLISNLLV
Sbjct:  468 LHFSLNPFSMLSQLLGPRICCYLSTLFCCFILVVFAFYMGPTLISNLLV 516
[Close]
BLAST of mRNA_H-akashiwo_Contig101.16.1 vs. uniprot
Match: A0A7S3XX73_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XX73_HETAK)

HSP 1 Score: 48.1 bits (113), Expect = 3.620e-5
Identity = 28/46 (60.87%), Postives = 31/46 (67.39%), Query Frame = 1 
Query:    1 LHFSLNPFSMLSQLLGPRICCYLSTLFCCFILVVFAF---YMGPTL 129
            L FSLNPFSMLSQLLGP+I CY+    CC  LV+FA    Y  P L
Sbjct:  105 LKFSLNPFSMLSQLLGPKITCYV---ICCLFLVLFALLSIYCSPFL 147
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig101.16.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7S4D7N3_HETAK9.100e-23100.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3XX73_HETAK3.620e-560.87Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig101contigH-akashiwo_Contig101:702841..703906 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size191
Hectar predicted targeting categorysignal anchor
Exons2
Cds size123
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387049.065145-UTR-H-akashiwo_Contig101:702840..7028811681387049.065145-UTR-H-akashiwo_Contig101:702840..702881Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig101 702841..702881 -
1681387049.0941112-UTR-H-akashiwo_Contig101:703879..7039061681387049.0941112-UTR-H-akashiwo_Contig101:703879..703906Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig101 703880..703906 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387049.074958-CDS-H-akashiwo_Contig101:702881..7029851681387049.074958-CDS-H-akashiwo_Contig101:702881..702985Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig101 702882..702985 -
1681387049.0844464-CDS-H-akashiwo_Contig101:703860..7038791681387049.0844464-CDS-H-akashiwo_Contig101:703860..703879Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig101 703861..703879 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig101.16.1prot_H-akashiwo_Contig101.16.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig101 702882..703879 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig101.16.1

>prot_H-akashiwo_Contig101.16.1 ID=prot_H-akashiwo_Contig101.16.1|Name=mRNA_H-akashiwo_Contig101.16.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=41bp
MLSQLLGPRICCYLSTLFCCFILVVFAFYMGPTLISNLLV*
back to top

mRNA from alignment at H-akashiwo_Contig101:702841..703906-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig101.16.1 ID=mRNA_H-akashiwo_Contig101.16.1|Name=mRNA_H-akashiwo_Contig101.16.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1066bp|location=Sequence derived from alignment at H-akashiwo_Contig101:702841..703906- (Heterosigma akashiwo CCMP452)
CTGCACTTCTCGCTCAACCCGTTCTCCATGCTCTCCCAGCTGCTGGGTGC
GGCGTCGGGGCGGGGCTCGGTCGTTGTGTTGCTGTCACCTTTATACGGAC
CTACGACATATATAAAAAAAATGATTTGCAGGGACTTGCTTGATCTGAGA
AGAGAAGTCCCTTCTGGTATGGTGCATTGTGTGATCAAGTTTCCTGCATG
CCGCAGAAATACTGTTAATAAAAAAATAGAAGTTGTTTGTACAAGATAAA
TATATATTTTTGACGATCGAATGTTATTGCTTGTATGTGTCGAGACCAGT
TCCCCCTACGATCTGCAGTCAAACCCCGAATTGCCATCGTCTTCTCTCTT
GCTTCTTCCGTTTGGGTTATATATAGAAGTACGACGAAGTGAAAGAGCTA
TGATCCGGCCGTTGAGGCATTACTGATTGACTGGACCTTGAATAAAATTA
AAAAAATAAGAATAATTAAATAAATTTATCATCATAGAGTTGTAGTTTTA
TGAAACAAGTATACTATTATTAATACATATTGACCTCTTCATCAAGAAAC
ATATTATTATTGTTATATATGATATGTACATATACATATTGTTCTTCATT
CATAGATGATGATGATGATGATGTTTAAATTTCAAGTCTAGCCTTTCAAA
TCACTTTCCGGGACATGAATGAAATTTCATTATGTGATACTCACATGTAT
TTGTCAATGATCATGTGTGTAGATAATACTGAAGATCGGACTCTCGATCG
AAATATTTAGTTGTAATGAAGTTCTGTTGGATTATAAAAAGTGTCCTTAT
CAATCTGTCATTGATTATGTGTGTAGATGTTTTATCATCAGTGACTCCAT
TTAAACAGCTGATGATACATATATATATACATGCATGCTTTTTCTTTTGC
TGCACCTGATCTGTAATCCAGGCCCAAGAATATGCTGCTATCTTAGCACA
TTGTTTTGTTGCTTCATTTTGGTGGTATTTGCCTTCTACATGGGACCAAC
TCTTATTTCCAACCTGCTAGTATAGTGCAGTTGTTCTTTGTTTCTTTTTT
CTATATATCTAAGCAC
back to top

Coding sequence (CDS) from alignment at H-akashiwo_Contig101:702841..703906-

>mRNA_H-akashiwo_Contig101.16.1 ID=mRNA_H-akashiwo_Contig101.16.1|Name=mRNA_H-akashiwo_Contig101.16.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=123bp|location=Sequence derived from alignment at H-akashiwo_Contig101:702841..703906- (Heterosigma akashiwo CCMP452)
ATGCTCTCCCAGCTGCTGGGCCCAAGAATATGCTGCTATCTTAGCACATT
GTTTTGTTGCTTCATTTTGGTGGTATTTGCCTTCTACATGGGACCAACTC
TTATTTCCAACCTGCTAGTATAG
back to top