mRNA_H-akashiwo_Contig1007.7.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1007.7.1
Unique NamemRNA_H-akashiwo_Contig1007.7.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1007.7.1 vs. uniprot
Match: A0A7S3UTE9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UTE9_HETAK)

HSP 1 Score: 117 bits (293), Expect = 3.970e-32
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1 
Query:    7 MYPNSTRTPAPQQGSFPPNIFTKSQLDAMRTQISRFKQLNAQFENFKARRAQHAKQQVQP 186
            MYPNSTRTPAPQQGSFPPNIFTKSQLDAMRTQISRFKQLNAQFENFKARRAQHAKQQVQP
Sbjct:    1 MYPNSTRTPAPQQGSFPPNIFTKSQLDAMRTQISRFKQLNAQFENFKARRAQHAKQQVQP 60
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1007.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3UTE9_HETAK3.970e-32100.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1007contigH-akashiwo_Contig1007:154082..154634 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size193
Hectar predicted targeting categoryother localisation
Exons3
Cds size186
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387048.350538-CDS-H-akashiwo_Contig1007:154081..1541021681387048.350538-CDS-H-akashiwo_Contig1007:154081..154102Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1007 154082..154102 -
1681387048.3619618-CDS-H-akashiwo_Contig1007:154349..1544391681387048.3619618-CDS-H-akashiwo_Contig1007:154349..154439Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1007 154350..154439 -
1681387048.3699837-CDS-H-akashiwo_Contig1007:154553..1546281681387048.3699837-CDS-H-akashiwo_Contig1007:154553..154628Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1007 154554..154628 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387048.384349-UTR-H-akashiwo_Contig1007:154628..1546341681387048.384349-UTR-H-akashiwo_Contig1007:154628..154634Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1007 154629..154634 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1007.7.1prot_H-akashiwo_Contig1007.7.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1007 154082..154628 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1007.7.1

>prot_H-akashiwo_Contig1007.7.1 ID=prot_H-akashiwo_Contig1007.7.1|Name=mRNA_H-akashiwo_Contig1007.7.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=62bp
MYPNSTRTPAPQQGSFPPNIFTKSQLDAMRTQISRFKQLNAQFENFKARR
AQHAKQQVQPPP
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mRNA from alignment at H-akashiwo_Contig1007:154082..154634-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1007.7.1 ID=mRNA_H-akashiwo_Contig1007.7.1|Name=mRNA_H-akashiwo_Contig1007.7.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=553bp|location=Sequence derived from alignment at H-akashiwo_Contig1007:154082..154634- (Heterosigma akashiwo CCMP452)
TCGGAGATGTATCCTAACAGTACTCGTACCCCTGCGCCTCAGCAAGGGTC
TTTCCCTCCAAACATCTTTACCAAGAGCCAGGTACTTTCCGAAAAAGCAT
ACACGTTATACTATATTTCTCAGCATAAATGTATATTGTTTTAGTTTGGT
TTCACTGTATTATGTTGTTATTCAATCTTCGTGCCCTTGCATCAGCTGGA
TGCGATGCGAACCCAAATATCGCGGTTCAAGCAGTTGAATGCTCAGTTTG
AAAACTTCAAAGCCAGAAGGGCCCAGCATGCCAAGGTACCTGACAGTAGA
GGACCCTTTCACCTTCTTGTGTTATTAAATCAACCTTGATACTCAGCTAT
TATTTTCAACTATCATACTAAGCTAGTCATACATGGCAGAGGTCTTTTTG
TTGTCATGTTGAATTTCATTTGAGTTTTTTTTTTATGTTACATCAATTTT
ATCAAGTTGAAGATTTGTTTTACTTATTCCCCCACGAGCTTTCCTGCCCC
TCCACAACAACCGCCACTGCCGCCGAGAACAGCAGCAGGTTCAGCCGCCG
CCG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1007:154082..154634-

>mRNA_H-akashiwo_Contig1007.7.1 ID=mRNA_H-akashiwo_Contig1007.7.1|Name=mRNA_H-akashiwo_Contig1007.7.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=186bp|location=Sequence derived from alignment at H-akashiwo_Contig1007:154082..154634- (Heterosigma akashiwo CCMP452)
ATGTATCCTAACAGTACTCGTACCCCTGCGCCTCAGCAAGGGTCTTTCCC
TCCAAACATCTTTACCAAGAGCCAGCTGGATGCGATGCGAACCCAAATAT
CGCGGTTCAAGCAGTTGAATGCTCAGTTTGAAAACTTCAAAGCCAGAAGG
GCCCAGCATGCCAAGCAGCAGGTTCAGCCGCCGCCG
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