mRNA_H-akashiwo_Contig1000.5.1 (mRNA) Heterosigma akashiwo CCMP452
Overview
Homology
BLAST of mRNA_H-akashiwo_Contig1000.5.1 vs. uniprot
Match: A0A7S2V5R3_9STRA (Dynein light chain (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5R3_9STRA) HSP 1 Score: 153 bits (387), Expect = 3.010e-46 Identity = 75/95 (78.95%), Postives = 81/95 (85.26%), Query Frame = 1 Query: 1 MEGRGSGGGGNKFVCDMDEHGDMKQDAINIAAQAVEQFILERDISKHIKRQFDQKYGPTWHCIVGTDFRAFVTHESKNFIFFYNGKLAICLYKAG 285 ME RGSG G K VCDMDEHG+MK DA N+AA AVEQ E+DIS+HIK FDQKYGPTWHCIVGTDFRAFVTHESK+FIFFY GK+AICLYKAG Sbjct: 39 MESRGSGEG--KLVCDMDEHGEMKNDAKNVAAAAVEQHQEEKDISRHIKAHFDQKYGPTWHCIVGTDFRAFVTHESKHFIFFYIGKIAICLYKAG 131
BLAST of mRNA_H-akashiwo_Contig1000.5.1 vs. uniprot
Match: F0XW00_AURAN (Dynein light chain (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XW00_AURAN) HSP 1 Score: 134 bits (338), Expect = 1.780e-39 Identity = 58/78 (74.36%), Postives = 68/78 (87.18%), Query Frame = 1 Query: 52 DEHGDMKQDAINIAAQAVEQFILERDISKHIKRQFDQKYGPTWHCIVGTDFRAFVTHESKNFIFFYNGKLAICLYKAG 285 DEHG+MKQ+ N+AA A+EQ++ E ++SKHIK FDQKYGPTWHCIVG+DFRA+VTHESKNFIFFY GK AICLYK G Sbjct: 1 DEHGEMKQEVYNLAAYAIEQYVTEMEVSKHIKAHFDQKYGPTWHCIVGSDFRAYVTHESKNFIFFYQGKTAICLYKCG 78
BLAST of mRNA_H-akashiwo_Contig1000.5.1 vs. uniprot
Match: A0A7S2CIH5_9STRA (Dynein light chain n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CIH5_9STRA) HSP 1 Score: 134 bits (337), Expect = 7.830e-39 Identity = 62/87 (71.26%), Postives = 71/87 (81.61%), Query Frame = 1 Query: 25 GGNKFVCDMDEHGDMKQDAINIAAQAVEQFILERDISKHIKRQFDQKYGPTWHCIVGTDFRAFVTHESKNFIFFYNGKLAICLYKAG 285 G +K VCDMDEHG+MK DA +A +A+E+F E+ IS IK FD KYGPTWHCIVG+DFRAFVTHESK+FIFFY GK AICLYKAG Sbjct: 30 GSSKIVCDMDEHGEMKADAHTVAGEAIEKFTEEKAISTSIKSFFDAKYGPTWHCIVGSDFRAFVTHESKHFIFFYIGKTAICLYKAG 116
BLAST of mRNA_H-akashiwo_Contig1000.5.1 vs. uniprot
Match: A0A7S0SUZ6_9STRA (Dynein light chain n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SUZ6_9STRA) HSP 1 Score: 127 bits (320), Expect = 1.940e-36 Identity = 62/95 (65.26%), Postives = 76/95 (80.00%), Query Frame = 1 Query: 7 GRGSGGGGNKFVCDMDEHG---DMKQDAINIAAQAVEQFILERDISKHIKRQFDQKYGPTWHCIVGTDFRAFVTHESKNFIFFYNGKLAICLYKA 282 G GS G +K VCDM++HG +MK DA+++A+ A+E E+DIS+HIK FDQKYGPTWHCIVG+DFRAFVT+ESK+FIFFY GK AICLYK Sbjct: 7 GAGSSGPHSKMVCDMEDHGIHGEMKNDALSVASTALEANQEEKDISRHIKSFFDQKYGPTWHCIVGSDFRAFVTYESKHFIFFYIGKTAICLYKT 101
BLAST of mRNA_H-akashiwo_Contig1000.5.1 vs. uniprot
Match: A0A7S1YV50_9STRA (Dynein light chain n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1YV50_9STRA) HSP 1 Score: 127 bits (318), Expect = 6.690e-36 Identity = 57/89 (64.04%), Postives = 69/89 (77.53%), Query Frame = 1 Query: 19 GGGGNKFVCDMDEHGDMKQDAINIAAQAVEQFILERDISKHIKRQFDQKYGPTWHCIVGTDFRAFVTHESKNFIFFYNGKLAICLYKAG 285 G G NK +CDMDEH +MK DAI++A A+E I E+D + HIKR FD KYGPTWH IVG+DF+A+ THE+K F FFY GK AIC+YKAG Sbjct: 31 GTGMNKQICDMDEHSEMKSDAISVATNAIESHIQEKDQANHIKRAFDAKYGPTWHVIVGSDFKAYGTHEAKTFFFFYVGKAAICMYKAG 119
BLAST of mRNA_H-akashiwo_Contig1000.5.1 vs. uniprot
Match: D7G4Z5_ECTSI (Dynein light chain n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4Z5_ECTSI) HSP 1 Score: 124 bits (312), Expect = 2.460e-35 Identity = 56/84 (66.67%), Postives = 70/84 (83.33%), Query Frame = 1 Query: 34 KFVCDMDEHGDMKQDAINIAAQAVEQFILERDISKHIKRQFDQKYGPTWHCIVGTDFRAFVTHESKNFIFFYNGKLAICLYKAG 285 K V DMD+HG+M+ DA N AA A+E E++IS+ IK +F+ KYGPTWHCIVGTDF+AFVTHESK+F+FFY+GK+A CLYKAG Sbjct: 9 KMVSDMDDHGEMRVDAQNWAAAAIESKSDEKEISRAIKSKFEVKYGPTWHCIVGTDFKAFVTHESKHFVFFYHGKMAFCLYKAG 92
BLAST of mRNA_H-akashiwo_Contig1000.5.1 vs. uniprot
Match: A0A8J2SHI5_9STRA ([Phosphatase 2A protein]-leucine-carboxy methyltransferase n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SHI5_9STRA) HSP 1 Score: 129 bits (325), Expect = 3.420e-34 Identity = 56/82 (68.29%), Postives = 69/82 (84.15%), Query Frame = 1 Query: 40 VCDMDEHGDMKQDAINIAAQAVEQFILERDISKHIKRQFDQKYGPTWHCIVGTDFRAFVTHESKNFIFFYNGKLAICLYKAG 285 C +DEHG+MKQ+A N+AA AVEQF+ E +ISKHIK QFD+KYGPTWHCIVG+DF+ THE+K+FIFFY+GK A+ LYK G Sbjct: 297 ACSVDEHGEMKQEAYNLAAYAVEQFVTEMEISKHIKAQFDEKYGPTWHCIVGSDFKLQCTHEAKHFIFFYHGKTAVALYKCG 378
BLAST of mRNA_H-akashiwo_Contig1000.5.1 vs. uniprot
Match: A0A835YST4_9STRA (Dynein light chain n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YST4_9STRA) HSP 1 Score: 118 bits (295), Expect = 9.560e-33 Identity = 54/88 (61.36%), Postives = 67/88 (76.14%), Query Frame = 1 Query: 22 GGGNKFVCDMDEHGDMKQDAINIAAQAVEQFILERDISKHIKRQFDQKYGPTWHCIVGTDFRAFVTHESKNFIFFYNGKLAICLYKAG 285 G + V DMD+H +M+ DA AA A+E E+ ISK IK + D KYGPTWHCIVGTDF+A+VTHE+K F+FFY+GK+AICLYKAG Sbjct: 5 GASSSVVSDMDDHSEMRTDAQAWAAAAIESHAEEKAISKDIKGRMDDKYGPTWHCIVGTDFKAYVTHETKTFMFFYHGKMAICLYKAG 92
BLAST of mRNA_H-akashiwo_Contig1000.5.1 vs. uniprot
Match: A0A482SJR4_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SJR4_9ARCH) HSP 1 Score: 115 bits (288), Expect = 6.300e-32 Identity = 53/72 (73.61%), Postives = 59/72 (81.94%), Query Frame = 1 Query: 67 MKQDAINIAAQAVEQFILERDISKHIKRQFDQKYGPTWHCIVGTDFRAFVTHESKNFIFFYNGKLAICLYKA 282 MK DA + A A+E E+DISKH+K FDQKYGPTWHCIVG+DFRAFVTHESK+FIFFY GK AICLYKA Sbjct: 1 MKHDAFTVVAAALETNTEEKDISKHVKTYFDQKYGPTWHCIVGSDFRAFVTHESKHFIFFYIGKTAICLYKA 72
BLAST of mRNA_H-akashiwo_Contig1000.5.1 vs. uniprot
Match: A0A1X7VIS5_AMPQE (Dynein light chain n=3 Tax=Metazoa TaxID=33208 RepID=A0A1X7VIS5_AMPQE) HSP 1 Score: 108 bits (269), Expect = 8.000e-29 Identity = 48/81 (59.26%), Postives = 68/81 (83.95%), Query Frame = 1 Query: 43 CDMDEHGDMKQDAINIAAQAVEQFILERDISKHIKRQFDQKYGPTWHCIVGTDFRAFVTHESKNFIFFYNGKLAICLYKAG 285 DM E DM+QDA+ IA QA+E+F +E+DI+ +IK++FD+KY PTWHCIVG +F ++VTHE+KNFI+FY G++AI L+K+G Sbjct: 11 ADMSE--DMQQDAVEIATQAMEKFNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKNFIYFYLGQVAILLFKSG 89 The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1000.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-akashiwo_Contig1000.5.1 >prot_H-akashiwo_Contig1000.5.1 ID=prot_H-akashiwo_Contig1000.5.1|Name=mRNA_H-akashiwo_Contig1000.5.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=96bp MEGRGSGGGGNKFVCDMDEHGDMKQDAINIAAQAVEQFILERDISKHIKRback to top mRNA from alignment at H-akashiwo_Contig1000:261675..261962+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-akashiwo_Contig1000.5.1 ID=mRNA_H-akashiwo_Contig1000.5.1|Name=mRNA_H-akashiwo_Contig1000.5.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=288bp|location=Sequence derived from alignment at H-akashiwo_Contig1000:261675..261962+ (Heterosigma akashiwo CCMP452)back to top Coding sequence (CDS) from alignment at H-akashiwo_Contig1000:261675..261962+ >mRNA_H-akashiwo_Contig1000.5.1 ID=mRNA_H-akashiwo_Contig1000.5.1|Name=mRNA_H-akashiwo_Contig1000.5.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=288bp|location=Sequence derived from alignment at H-akashiwo_Contig1000:261675..261962+ (Heterosigma akashiwo CCMP452)back to top |