mRNA_H-akashiwo_Contig100.14.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig100.14.1
Unique NamemRNA_H-akashiwo_Contig100.14.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig100.14.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig100contigH-akashiwo_Contig100:549164..550708 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size326
Hectar predicted targeting categoryother localisation
Exons2
Cds size324
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387045.8179972-CDS-H-akashiwo_Contig100:549163..5491961681387045.8179972-CDS-H-akashiwo_Contig100:549163..549196Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig100 549164..549196 +
1681387045.8270156-CDS-H-akashiwo_Contig100:550415..5507061681387045.8270156-CDS-H-akashiwo_Contig100:550415..550706Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig100 550416..550706 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig100.14.1prot_H-akashiwo_Contig100.14.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig100 549164..550706 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig100.14.1

>prot_H-akashiwo_Contig100.14.1 ID=prot_H-akashiwo_Contig100.14.1|Name=mRNA_H-akashiwo_Contig100.14.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=108bp
QQRFAVQVQLQEQVQEFFFLRKRKQQWFLGTTTKMQDPLPTRQPAFCLQQ
KNGSTSAPRGICQQIKTLLISNSSKDLAIPPPFFFGLFHTTEILCIEYAF
FCSRSFYC
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mRNA from alignment at H-akashiwo_Contig100:549164..550708+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig100.14.1 ID=mRNA_H-akashiwo_Contig100.14.1|Name=mRNA_H-akashiwo_Contig100.14.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1545bp|location=Sequence derived from alignment at H-akashiwo_Contig100:549164..550708+ (Heterosigma akashiwo CCMP452)
CAGCAGCGCttCGCGGTcCAAGTCCAGCTcCAGGTgGGGGGCGAGGGGGG
ATGTacGGCGCCCCGGCCTCTCTGTACGCACGCGTCGTGGGGACGTGGTC
GCCTCTCGCCCCCTCCTCGGTCTTATACCTGTACCTCTCGGACAACAGCG
CGGCAAAACCGATGCTGCCGTATGAAGTCGGTAGAACAAGTAGGGGACGG
GACCCCCCCAAACCGGTATATTTATTTAATTGTATTGTATCATATGTGTG
TATGATACGTATGAAATTATTATTATTATGTACATGTCTCGAGGAACCCG
CACATACTACCGGCCTATCCAAGCACCCAATGTGCACCCAATGACTTAAT
AGTTAGTACTTAAACTCATAAGAAGACTTTATTTTTTTGGATCAAATTAT
TTTGGGAGAAACCAATCAAAACAAGCTAACCCCTAGCTTATATGAGCAGA
TCTCTCCATGCACCATGTATCGTGATCATGTTTTTCGATACAATGCTGTT
GCTTTTTGCCTTGCTTTCAGACAGTGTGGAATATCAAACAATCAAAATTA
CAAACCACTTCTTTAGAGTGTTGTCTGCAACAAACATATAATATATTGTA
TATAATAATTATATTAACTCTGTGTGTGAACCTTCCCAGGCAGCCGGCCA
AATAATCTTATTTACCCCAAGTGTGAAATCAATGCCTTTCTGCTTGCACA
CTATCGTTGCTATACAATCTAGATGAGTGGTGACACTCCCAGGGCTTAGG
CCACCCTCCGGCCATACCCTGGCCAGCGGGACAGCTGCTGGTGGCAATCC
ACGCTACTGTTGGTCCTAGCCACCAGTGTACGCATTCTTCCGCTCCATGT
ATGAGTGTACACCCTGCTGCCCAGCCAAGATAAACCAAAATAGACCATCT
CTATCGTTGACAAGCACGGTGTGCTTAATCACATGTGAATAAAAAGGGGT
ACCGCGTCTTCCCCTGCCATGTCACTGCAGGGGCTGCGAGTAAAGATAGT
TGATCATTAAGTCAACAATAAGCCCAAATGATGTATTTTGATATTTAGTC
ATGGCGAGGGAGGTTATAATTGTTGCCATACATACATCCTTGCATCTACA
ACAAAGTTCCCAGCAATTCCTACAAAGTTGTTGTTTTTTGTACTTGGATG
ATTTGTATCTGATTATTTAATCTTGCAATTAAATCGAGTATGAACTTTAC
TGTGGCCATGACACACTGATGTTGTTCTATTTTCTGGCACAATCACTTCC
AGGAGCAAGTCCAGGAGTTCTTCTTCCTAAGGAAGAGAAAGCAGCAATGG
TTTCTTGGAACAACAACAAAAATGCAGGACCCCCTGCCTACAAGACAACC
TGCTTTCTGTTTACAGCAGAAAAATGGTAGTACATCTGCACCACGAGGGA
TTTGCCAACAAATTAAAACATTATTAATCAGTAACTCTAGCAAGGACCTT
GCAATACCGCCACCTTTTTTTTTTGGTTTGTTTCACACAACAGAAATACT
ATGTATTGAATATGCTTTTTTTTGCAGCCGTTCATTTTATTGTCA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig100:549164..550708+

>mRNA_H-akashiwo_Contig100.14.1 ID=mRNA_H-akashiwo_Contig100.14.1|Name=mRNA_H-akashiwo_Contig100.14.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=324bp|location=Sequence derived from alignment at H-akashiwo_Contig100:549164..550708+ (Heterosigma akashiwo CCMP452)
CAGCAGCGCttCGCGGTcCAAGTCCAGCTcCAGGAGCAAGTCCAGGAGTT
CTTCTTCCTAAGGAAGAGAAAGCAGCAATGGTTTCTTGGAACAACAACAA
AAATGCAGGACCCCCTGCCTACAAGACAACCTGCTTTCTGTTTACAGCAG
AAAAATGGTAGTACATCTGCACCACGAGGGATTTGCCAACAAATTAAAAC
ATTATTAATCAGTAACTCTAGCAAGGACCTTGCAATACCGCCACCTTTTT
TTTTTGGTTTGTTTCACACAACAGAAATACTATGTATTGAATATGCTTTT
TTTTGCAGCCGTTCATTTTATTGT
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