mRNA_H-akashiwo_Contig10.88.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig10.88.1
Unique NamemRNA_H-akashiwo_Contig10.88.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig10.88.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig10contigH-akashiwo_Contig10:3715794..3716623 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size391
Hectar predicted targeting categorymitochondrion
Exons4
Cds size333
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387041.7486537-UTR-H-akashiwo_Contig10:3715793..37158511681387041.7486537-UTR-H-akashiwo_Contig10:3715793..3715851Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig10 3715794..3715851 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387041.7612824-CDS-H-akashiwo_Contig10:3715851..37159631681387041.7612824-CDS-H-akashiwo_Contig10:3715851..3715963Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig10 3715852..3715963 +
1681387041.7713106-CDS-H-akashiwo_Contig10:3716090..37161801681387041.7713106-CDS-H-akashiwo_Contig10:3716090..3716180Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig10 3716091..3716180 +
1681387041.7813277-CDS-H-akashiwo_Contig10:3716324..37163821681387041.7813277-CDS-H-akashiwo_Contig10:3716324..3716382Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig10 3716325..3716382 +
1681387041.7919486-CDS-H-akashiwo_Contig10:3716550..37166231681387041.7919486-CDS-H-akashiwo_Contig10:3716550..3716623Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig10 3716551..3716623 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig10.88.1prot_H-akashiwo_Contig10.88.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig10 3715852..3716623 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig10.88.1

>prot_H-akashiwo_Contig10.88.1 ID=prot_H-akashiwo_Contig10.88.1|Name=mRNA_H-akashiwo_Contig10.88.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=111bp
MLGITRRVLTARSCGYLSFNRSIGSPSNSIQLLHFKKAPPSRSWAGQRRG
FFSKYLQEREIQSLERQAARSPEDVSIQLRLLQELNKVAPEAAITRYKTA
GLGRFGPAVFR
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mRNA from alignment at H-akashiwo_Contig10:3715794..3716623+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig10.88.1 ID=mRNA_H-akashiwo_Contig10.88.1|Name=mRNA_H-akashiwo_Contig10.88.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=830bp|location=Sequence derived from alignment at H-akashiwo_Contig10:3715794..3716623+ (Heterosigma akashiwo CCMP452)
GTGAGAGTAGAAGAGAAACAACTTTCCCCAACTTTGATCGGGGAAAGTTC
CCTGAGTCATGTTGGGTATTACCAGGAGAGTCCTCACGGCACGTTCTTGT
GGATACCTTTCATTCAATCGTTCAATTGGAAGCCCATCAAATTCGATTCA
ACTCCTCCACTTCAAAAAAGGTACGCCTGGACCCAGTTTAAAATGTCCAA
CCCTGTGGCGCCATTTTCCCCACCAGAAACCCGATTTTGACTGAATTTTG
ATCAATCACGTCTTATCAGCCTCAGTTTACTACTCCTCCCTTTACAGCCC
CCCCTTCAAGATCATGGGCCGGGCAGCGCCGTGGCTTCTTTAGCAAATAC
CTTCAAGAAAGAGAGATTCAAAGCCTTGAACGCCAAGGTATTTGAAATCT
GTTGAACAAATCACTTGTTTTTCAGAATCAACTTTGTGCGTTTAAACACC
TTCATACAAAGCTTCTTATAGCAAACCACACCTTTGTTGGCGAATGCCTT
CTTTTCCCAAATCCAAACTCCAAACAACAAGCTGCTCGGTCCCCGGAAGA
TGTCTCCATTCAGCTGCGTCTCCTGCAGGAACTGAACAAGTGGGTATTTG
ACCTGACCCTCTACAGACCCTTTGTAAACTCTTAACTCTTAACTAATTAT
TGATGTCTGATGGCCCCAGCTGAACTGGCGGCGTGCTGTGCTCTCATCTA
GTGCAAAAGTGTGACCTAGACCTTCCTTCCTTTCTTCCTTTTTTGCTTCT
GAACCAGGGTTGCCCCAGAGGCCGCAATCACTCGCTACAAAACTGCTGGG
CTGGGTCGGTTTGGGCCTGCTGTCTTCAGG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig10:3715794..3716623+

>mRNA_H-akashiwo_Contig10.88.1 ID=mRNA_H-akashiwo_Contig10.88.1|Name=mRNA_H-akashiwo_Contig10.88.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=333bp|location=Sequence derived from alignment at H-akashiwo_Contig10:3715794..3716623+ (Heterosigma akashiwo CCMP452)
ATGTTGGGTATTACCAGGAGAGTCCTCACGGCACGTTCTTGTGGATACCT
TTCATTCAATCGTTCAATTGGAAGCCCATCAAATTCGATTCAACTCCTCC
ACTTCAAAAAAGCCCCCCCTTCAAGATCATGGGCCGGGCAGCGCCGTGGC
TTCTTTAGCAAATACCTTCAAGAAAGAGAGATTCAAAGCCTTGAACGCCA
AGCTGCTCGGTCCCCGGAAGATGTCTCCATTCAGCTGCGTCTCCTGCAGG
AACTGAACAAGGTTGCCCCAGAGGCCGCAATCACTCGCTACAAAACTGCT
GGGCTGGGTCGGTTTGGGCCTGCTGTCTTCAGG
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