mRNA_H-akashiwo_Contig10.61.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig10.61.1
Unique NamemRNA_H-akashiwo_Contig10.61.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig10.61.1 vs. uniprot
Match: A0A7S3YCM9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YCM9_HETAK)

HSP 1 Score: 92.8 bits (229), Expect = 1.760e-22
Identity = 45/45 (100.00%), Postives = 45/45 (100.00%), Query Frame = 1 
Query:   28 APPINEFVQWAERAGITSERARPANIDGLRGMVAAQKISAGTDFI 162
            APPINEFVQWAERAGITSERARPANIDGLRGMVAAQKISAGTDFI
Sbjct:   89 APPINEFVQWAERAGITSERARPANIDGLRGMVAAQKISAGTDFI 133
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig10.61.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3YCM9_HETAK1.760e-22100.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig10contigH-akashiwo_Contig10:2857613..2858060 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size164
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size162
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387041.525663-CDS-H-akashiwo_Contig10:2857612..28577301681387041.525663-CDS-H-akashiwo_Contig10:2857612..2857730Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig10 2857613..2857730 +
1681387041.5354636-CDS-H-akashiwo_Contig10:2858015..28580591681387041.5354636-CDS-H-akashiwo_Contig10:2858015..2858059Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig10 2858016..2858059 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig10.61.1prot_H-akashiwo_Contig10.61.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig10 2857613..2858059 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig10.61.1

>prot_H-akashiwo_Contig10.61.1 ID=prot_H-akashiwo_Contig10.61.1|Name=mRNA_H-akashiwo_Contig10.61.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=54bp
KKSGGSSKAAPPINEFVQWAERAGITSERARPANIDGLRGMVAAQKISAG
TDFI
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mRNA from alignment at H-akashiwo_Contig10:2857613..2858060+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig10.61.1 ID=mRNA_H-akashiwo_Contig10.61.1|Name=mRNA_H-akashiwo_Contig10.61.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=448bp|location=Sequence derived from alignment at H-akashiwo_Contig10:2857613..2858060+ (Heterosigma akashiwo CCMP452)
AAAAAGTCGGGAGGCAGTTCCAAAGCAGCCCCCCCCATTAACGAATTTGT
ACAGTGGGCCGAACGAGCAGGCATTACTTCAGAAAGAGCAAGACCTGCAA
ATATTGACGGCCTTCGAGGTGTGTTTTGGTGCTGCCCCAGAAAATAGGGC
TCTTCCTCTGCACATGCAAGCTGTTCCTGGGGATTGCGTACATACAATGA
TGTAAGATGTGGCTTTTGGCCCGAAAGTATTGCAAACTGCACCAAAAAAG
ACACAAATAAAGATAGTTCAAAGAACTACTGGTGACGAAACGCAGCCGCC
ACGTCCTCCTTGCCATGCCCTTACTGCCCCGCCCCCCCGGCCCCCCACCG
CCCAACCCCCCAATCCCTCCCTCCTCCCTGCCTGCTGCCGCCGCTGCGGG
CAGGCATGGTGGCCGCCCAAAAGATCAGCGCCGGCACGGATTTCATCG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig10:2857613..2858060+

>mRNA_H-akashiwo_Contig10.61.1 ID=mRNA_H-akashiwo_Contig10.61.1|Name=mRNA_H-akashiwo_Contig10.61.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=162bp|location=Sequence derived from alignment at H-akashiwo_Contig10:2857613..2858060+ (Heterosigma akashiwo CCMP452)
AAAAAGTCGGGAGGCAGTTCCAAAGCAGCCCCCCCCATTAACGAATTTGT
ACAGTGGGCCGAACGAGCAGGCATTACTTCAGAAAGAGCAAGACCTGCAA
ATATTGACGGCCTTCGAGGCATGGTGGCCGCCCAAAAGATCAGCGCCGGC
ACGGATTTCATC
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