mRNA_H-akashiwo_Contig10.60.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig10.60.1
Unique NamemRNA_H-akashiwo_Contig10.60.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
[Close]
BLAST of mRNA_H-akashiwo_Contig10.60.1 vs. uniprot
Match: A0A6T5NYX6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5NYX6_HETAK)

HSP 1 Score: 568 bits (1465), Expect = 3.370e-204
Identity = 274/274 (100.00%), Postives = 274/274 (100.00%), Query Frame = 2 
Query:   38 MKLVEPCFAPRLILLLFCSGCLFWGNAFKSECNQKQQCQRATRWPLTESKPLCHAIIEKKDLNDGSAQEIHLQQHRGRVLRQRLAICHLAFFSFFSGMPSFAATNPYTSGVPLNQIEVKSYQQQLREATPLSTIRGTWRLREFRPAREGGLCRGTVLFRGFEDEPKGTLEYAAAPGGGCEGRAGKGNWLVKPGRVSNGQIILSARWKIKFNDGTTLIYKGDVDVTGRLRDRPDASIDGEILIPVKTQAGSLSEKNSGLKFQADYLKVGSDSEKL 859
            MKLVEPCFAPRLILLLFCSGCLFWGNAFKSECNQKQQCQRATRWPLTESKPLCHAIIEKKDLNDGSAQEIHLQQHRGRVLRQRLAICHLAFFSFFSGMPSFAATNPYTSGVPLNQIEVKSYQQQLREATPLSTIRGTWRLREFRPAREGGLCRGTVLFRGFEDEPKGTLEYAAAPGGGCEGRAGKGNWLVKPGRVSNGQIILSARWKIKFNDGTTLIYKGDVDVTGRLRDRPDASIDGEILIPVKTQAGSLSEKNSGLKFQADYLKVGSDSEKL
Sbjct:    1 MKLVEPCFAPRLILLLFCSGCLFWGNAFKSECNQKQQCQRATRWPLTESKPLCHAIIEKKDLNDGSAQEIHLQQHRGRVLRQRLAICHLAFFSFFSGMPSFAATNPYTSGVPLNQIEVKSYQQQLREATPLSTIRGTWRLREFRPAREGGLCRGTVLFRGFEDEPKGTLEYAAAPGGGCEGRAGKGNWLVKPGRVSNGQIILSARWKIKFNDGTTLIYKGDVDVTGRLRDRPDASIDGEILIPVKTQAGSLSEKNSGLKFQADYLKVGSDSEKL 274
[Close]
BLAST of mRNA_H-akashiwo_Contig10.60.1 vs. uniprot
Match: A0A7S2Y0F9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y0F9_9STRA)

HSP 1 Score: 164 bits (415), Expect = 3.540e-45
Identity = 76/155 (49.03%), Postives = 110/155 (70.97%), Query Frame = 2 
Query:  395 SYQQQLREATPLSTIRGTWRLREFRPAREGGLCRGTVLFRGFEDEPKGTLEYAAAPGGGCEGRAGKGNWLVKPGRVSNGQIILSARWKIKFNDGTTLIYKGDVDVTGRLRDRPDASIDGEILIPVKTQAGSLSEKNSGLKFQADYLKVGSDSEKL 859
            SYQ Q+R+A  ++ IRG WR+RE+  ++   LC+G + F GF D+  GT++Y      GC  R G G WL+KP R+  G+++ SARWK+KF DGTTLIY GD+  +G + ++PD+++ GEILIPV  +AG +SEK+SG KF AD L++ +D+EKL
Sbjct:  119 SYQAQMRDAMQVAPIRGVWRIREYE-SKTAPLCKGQLKFDGFVDQMGGTVKYE-----GCNDRKGSGKWLLKPIRIQEGKVLYSARWKLKFTDGTTLIYVGDLRTSGYVTEKPDSTMSGEILIPVTNKAGIMSEKSSGGKFTADILEISTDTEKL 267
[Close]
BLAST of mRNA_H-akashiwo_Contig10.60.1 vs. uniprot
Match: W7TK28_9STRA (Uncharacterized protein n=4 Tax=Monodopsidaceae TaxID=425072 RepID=W7TK28_9STRA)

HSP 1 Score: 158 bits (400), Expect = 5.470e-43
Identity = 82/169 (48.52%), Postives = 109/169 (64.50%), Query Frame = 2 
Query:  356 YTSGVPLNQIEVKSYQQQLREATPLSTIRGTWRLREFRPAREGGLCRGTVLFRGFEDEP-KGTLEYAAAPGGGCEGRAGKGNWLVKPGRVSNGQIILSARWKIKFNDGTTLIYKGDVDVTGRLRDRPDASIDGEILIPVKTQAGSLSEKNSGLKFQADYLKVGSDSEKL 859
            +T     +Q+  +SY +Q+R+A P+ TIRG WR+RE+R  R+  LC+G +  RGF +EP KGTLEY      GC    GKGNWL+KP R++NGQI  SARWK++F+DG +LIY+GDV   G       +  DGEIL P     G+LSEK  G  F+AD ++V  D EKL
Sbjct:  104 HTEAQASDQVITQSYIEQVRDAIPVKTIRGVWRIREYRD-RDQPLCKGRIKMRGFVEEPNKGTLEYT-----GCNDGKGKGNWLLKPARIANGQIRFSARWKVRFSDGESLIYRGDVLAGGNYAKASASITDGEILKPFTGITGNLSEKKVGT-FEADLIQVSDDEEKL 265
[Close]
BLAST of mRNA_H-akashiwo_Contig10.60.1 vs. uniprot
Match: A0A835Z999_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z999_9STRA)

HSP 1 Score: 139 bits (351), Expect = 1.700e-36
Identity = 78/164 (47.56%), Postives = 105/164 (64.02%), Query Frame = 2 
Query:  392 KSYQQQLREATPLSTIRGTWRLREFRPAREGGLCRGTVLFRGFEDEP-KGTLEYAAAPGGGCEGRAGKGNWLVKPGRVSNGQIILSARWKIKFNDGT-TLIYKGDV--DVTGRLR----DRPDASIDGEILIPVKTQAGSLSEKNSGLKFQADYLKVGSDSEKL 859
            KSY QQ+ +A P+ TIRG WR+RE R      LC+G + F+GF DEP KGT+EY ++ G     R GKG WL+KPG ++ G+I+ SARWK+ +  G  + +Y+GDV  D T  L       PDA I GE+L P K + GSL EK+ G +F+AD L+V  D +KL
Sbjct:   46 KSYTQQIVDAIPIKTIRGVWRIREIREGES--LCKGKLTFKGFVDEPGKGTVEYVSSDGE----REGKGYWLLKPGSITAGKILFSARWKVTYKGGGGSFLYRGDVVLDSTETLHAAGNPHPDAHIRGEVLKPFKGRTGSLQEKHIG-EFEADLLQVDKDEDKL 202
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig10.60.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6T5NYX6_HETAK3.370e-204100.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2Y0F9_9STRA3.540e-4549.03Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
W7TK28_9STRA5.470e-4348.52Uncharacterized protein n=4 Tax=Monodopsidaceae Ta... [more]
A0A835Z999_9STRA1.700e-3647.56Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig10contigH-akashiwo_Contig10:2838725..2853613 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1003
Hectar predicted targeting categorysignal peptide
Exons5
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-15_000810.1
Cds size825
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig10.60.1prot_H-akashiwo_Contig10.60.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig10 2838866..2853576 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387043.4447632-UTR-H-akashiwo_Contig10:2838724..28388651681387043.4447632-UTR-H-akashiwo_Contig10:2838724..2838865Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig10 2838725..2838865 -
1681387043.5195632-UTR-H-akashiwo_Contig10:2853576..28536131681387043.5195632-UTR-H-akashiwo_Contig10:2853576..2853613Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig10 2853577..2853613 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387043.4554265-CDS-H-akashiwo_Contig10:2838865..28390531681387043.4554265-CDS-H-akashiwo_Contig10:2838865..2839053Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig10 2838866..2839053 -
1681387043.4676218-CDS-H-akashiwo_Contig10:2843963..28440501681387043.4676218-CDS-H-akashiwo_Contig10:2843963..2844050Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig10 2843964..2844050 -
1681387043.477274-CDS-H-akashiwo_Contig10:2852398..28525421681387043.477274-CDS-H-akashiwo_Contig10:2852398..2852542Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig10 2852399..2852542 -
1681387043.487876-CDS-H-akashiwo_Contig10:2853034..28531511681387043.487876-CDS-H-akashiwo_Contig10:2853034..2853151Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig10 2853035..2853151 -
1681387043.5031986-CDS-H-akashiwo_Contig10:2853287..28535761681387043.5031986-CDS-H-akashiwo_Contig10:2853287..2853576Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig10 2853288..2853576 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig10.60.1

>prot_H-akashiwo_Contig10.60.1 ID=prot_H-akashiwo_Contig10.60.1|Name=mRNA_H-akashiwo_Contig10.60.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=275bp
MKLVEPCFAPRLILLLFCSGCLFWGNAFKSECNQKQQCQRATRWPLTESK
PLCHAIIEKKDLNDGSAQEIHLQQHRGRVLRQRLAICHLAFFSFFSGMPS
FAATNPYTSGVPLNQIEVKSYQQQLREATPLSTIRGTWRLREFRPAREGG
LCRGTVLFRGFEDEPKGTLEYAAAPGGGCEGRAGKGNWLVKPGRVSNGQI
ILSARWKIKFNDGTTLIYKGDVDVTGRLRDRPDASIDGEILIPVKTQAGS
LSEKNSGLKFQADYLKVGSDSEKL*
back to top

mRNA from alignment at H-akashiwo_Contig10:2838725..2853613-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig10.60.1 ID=mRNA_H-akashiwo_Contig10.60.1|Name=mRNA_H-akashiwo_Contig10.60.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=14889bp|location=Sequence derived from alignment at H-akashiwo_Contig10:2838725..2853613- (Heterosigma akashiwo CCMP452)
TGGATCTGCATTGTTCTGCATTCTGCATTCTTCAAAAATGAAACTTGTCG
AGCCTTGTTTCGCGCCTAGGCTTATTTTACTCCTTTTTTGCAGTGGGTGT
TTGTTTTGGGGAAATGCATTCAAATCTGAATGCAACCAAAAACAACAATG
TCAGAGAGCTACACGTTGGCCTCTAACTGAGTCAAAGCCTTTGTGCCATG
CCATCATCGAGAAGAAAGACTTGAACGACGGTTCAGCGCAGGAGATCCAT
TTGCAACAACATCGAGGCAGAGTGTTAAGGCAGCGACTGGCGATCTGCCA
TTTGGCTTTCTTTTCTTTTTTTTCAGGTGGTTTCATAAGTTTTTTTGCAT
TATTATAGAAGAGTGCACGCACAGAAAATAAATCACTTGTTTCAGTCATT
CAAAAATCCAATGCCCTCTACATTTATTTTTCCCTACTATACATACCTTC
TTTGTGTAACAGGCATGCCTTCTTTCGCAGCTACAAACCCTTACACGTCA
GGTGTTCCTCTCAACCAAATAGAAGTAAAATCCTACCAGCAGCAGTTAAG
AGAAGCAACGCCCTTGAGCACAATCAGAGGTAAGTCTTCAAAAAGTGCAT
GACAGACCTTGATATTCCTTGCATATCAATGTGAAGAATTCTTGGACTTG
TAGGGGGGCGTTCCTTCTCACTCCACCTTCAATGCCCTGCACCATCACCG
CCGCCATCTTCGTTTTGCTTCCCTTCCCGCCGCCCCCTCTCCCCCCACCC
ACCCACCTAATTATTAACCCCAGCATTTTTTCCAGCTTAACACAGCATGC
CTTCCTTTCACCCCAATCCTTACCAACTTTCAGAAGATGCCACAGAGCAA
GAGCCCCAACCATATGAGACGGTCTCAATCGTCCCACTGTCTGCCAACAG
CGGGTAGGAGGCGGCTGCTGCAGGGGGGAGGAAGGAAGAAGAAAGAAAGT
GGGGGTGATCCATGGAAAAAAGGCGCCATTGTTGAGCGAGGGTGAGGGTC
ATGGATCGCCGTCGCCTCCTTTGTTTTCAGTCAACCGGCGGCCCATGAGT
TAGTTGGGGGGGAAAAAAAAGGCACGTGGCGGCTGCGGGAGTTCCGCCCG
GCGCGCGAGGGCGGCCTGTGCCGGGGCACGGTGCTCTTCCGCGGCTTCGA
GGACGAGCCGAAGGGCACGCTCGAGTACGCGGCCGCGCCCGGCGGCGGCT
GCGAGGGGCGCGCCGGTGAGGAGAAGGGGGCGCCGTCGTCGTTTGAGTTC
CACAACTGCAGCTCGTACGACACAATTACGTTTGAGCTGCACAACAGCTC
ATACAACTCAATTTAACATTTGATTGAGCTCAAAAACAGCTCATACAACA
CAATAACAGGGGGGGGGGGTCTTCTTGCCCTTTGCGGTGCCGGCGGCGCT
CGGTCTCTCCTCGGAGGGGCTCGTGGTTGGAGAAGAGTAGTTAGTCCCAC
CACTGTTTCGGGACTCGGTATACTAGTTTTTTTTTTCTACGTCCCCTTAC
ACGGGGTTCGAGGTCTCAGCTCTGAGGGTTGGAATAATTTGTTATTGAAG
GGTTAAGCTTCAGTTAACCCTCTTGGTTCCAGCGCATAGCGCCGCAGGTG
GAGGTGGCGCATTTTGGCCCTTTTTTTTACATGCCTACCATCTGATGAAA
GAGGTTGCAACTGATCATAACCTCTTCATTGCTAATTTATTGCAATCAAA
AAAACTTCACAACAAAAAAATAAACTGGCCATCAAACTCACCCCCAAACG
TTTCCCACAGAAGGCCAAATATACAACAATTTAAAAAAAAAAAAAAAAAA
CTACGCTAACATTTCAAGCCCTGAAAAACAATGTTAAAATCATTTCCAGC
CCCCCTGATTTTGTGAGAGGTGTCAAACGGAGTAAACTTAGTGTCCCCAG
CAGGCAAAGGCATCACTTTAGTTCTGTAATTTTTAATGAAGAATTTATCC
TGAAAATGGCCAAATGCGCCACCGGTGGCGCTTATGGCACCCCAAACGCC
ACACCAAGTTACCCTACCACCCTAATATAGTACATAAATAAAGATCATGC
CATAGAAACAACCTCATAAATGCAGTTAGCTCTCTGTATAAAGGTGTTTC
TTTGGCCAACACCTCCTTGGTGTTCTTTTGGGGGGGGGGGCGAACTCCCG
TACCAATTCCAACATAAATCACCAACAAGCATGGCCAATAACCCATGATA
TGTGGTGGTAGGTGAATTTAACTCAGCTTTATTACAAAACACGTGCATTG
GTTGATTTTTTATGATTCTTCAGCCCAGAAAAAATGTGATTGACTGTAGT
GAAGGGGTGCTTAAGATAGAGCTCTCCAAGTGGTGCGCTCCATGGGTGGT
TTAGAAGCGCCACGGGTGGCGCTCTGGTAACATATTACGGGCTAGAGGTC
CACCAAAAAATGTATTTGGCAGCCTGTGTTTGGTTTAGGAATGACAAAAA
ATAGATACAAGAGTTGATTGGATCCACAATGAAGGCCTCTTAGGCCCTTC
TTTATTCCCAGCCTCTGAGCCAATCTTCATATTTTTCAAGGCTGATTTCA
GCAATAAACTGCTCACATAATGATGGAATAGGGGGGAGGGGGAGAGGGAG
AACATTATCAAATCGTATTACTCCAGCATGTATATGGCTTTTGTGACTTT
TACTCAGCTAGTTCATCAATAGAAAGAACAGTGCCTTGAACTTTTGTATG
AATGAAAGCCTGTCCATGAGAGAAGAGACCTGGGTTACACCTGGTGGCTC
AATGGTGTTGCCTACCCAAGTACGCCTTCATATATGATGAACTTGACTGC
CTTGATTTTGAGCATTTGCCTCATGGAACTTCTTTGAATTGTTGAGAGGA
ATAATAATTTGGTTGTTTGTGAGCCAGCAATGTCATCAGCATAGCGATTT
ATCGGCCTGTGAAGTAAAGAGCATCATCTGTGCAGTCTAGAGTCCATCTG
AGATGCCCCACCCATATTTGTTCCAGAAAGCGATGCAAAAGGCAATTGAA
ATCATCAGTTTAAGGTTACAAACTGTTGTGAATTCGTTTGCCTTAAAACC
TTAAATCATATGTGTTTTGGCGCACATTTTGGGTCGAAAACAGCTATACC
CACCCTGGAAATTTGATCTAGAATGCACCGGTGGCGCACTCAGTGGTTCA
CCATTTTGACAAGGCAAGCCATTTGAGTTTTTGTCTGCCATAATTCAAAC
TTCTTGTATACTTGAATAGTGCGGTTCATCAGCTAATAATAATTATTCCA
GAAAAATAGAAGTATTTTTACACTACCTTGGTCCCAGAAAAAAAAACAGT
AAGACCTGAAGAGTTTCAAAATTTTCAAGAACCGGCAATTCTTCGGCTTC
ATCCCCCCCCCCCCTTCCCTCACCTCCTTCTCCTCCTCAAAGCCGGCTGT
AGTCAAAATAAAACTTTTGAGGCTTTTTTTTAGGTCAAGGCACATCAAAT
TACTTCGAGTTTGGATGTGTTTAGAATGGTTTTTTGATGTCCAAAAGCTA
GATTACAGGTTCAAGTTGAAGTTACTATGAACTACTGAGTGCGCGGAAGG
ATCTACGGACTCTAGAAAATATCACCGAATTCGAACTTCCGATGAAGGAA
CAACAAACTTGACCATGCCTATATTTGTTTTGGTTCTTTTTTAACTCAAT
ATCAATTTTTTTCTTTTCCGCGCACCCAAGATTGAATCTCAAAGAGAACC
AGGCTCGATGATGATGACCATGTTGCGTGTTGCCGCCATGATGACATGAT
GACGACCCGATTCAGCGAGCTGGTTCGGTTTTCATCTTCATCATCATCTC
TCCTTGTTGCAAGTGCAAACTGCGGCACTAGATCATCAGCAGCAGCACAT
ATCATGATCAGCGGCACAACATCAGCAGCACAAAGAAGGGATGATGATGA
TGCAGCAGCCAGCAGCGGCCCCCCTGCATCATTCATCATTCATAAAAGAA
CCAGAACAGCATCACAAGCATTCCTTCTTTGCTTGCCACCAGTAGAGTTT
CTAGCTCGATCTAGGTTTGTGGGTACGGATGCGGGAAGAGCGATGTTGTT
TCCGGCAACCTGGGGACCCTTCAGCCTGCAGCCGGCAGCCAGCGCCTGCT
GTGCGCCTTTCGTCCTACAGCGTGCAGCCGCAGCCGTGTGTGGTGTGCGT
GCGTTTCGAGGTCCCTGCCCTGAGCTGTTCTCGTTGCAACTGCAAGTGCA
AATTGCGGCACAAGATCTACCACAACATCTTCTTCAGCAGCACAAAGAAG
GGATGATGCAGCAGAAGAAGAAATGGACAGAAAAGGGAGAGGTGTATAGC
CTGCATCATTCATCATTCATAAGAAGCACCATCATCAGCGGCACAACAAC
ATCAGCAGCAGCACAAATAAGGGATGATGCAGTAGCTCTAGAGATTTACC
AAACTCATACCATTTTGCGTGGAATTGATAAAAAATGTGTGATTTTTTGT
GAATTTTGAAATTCACGCCAAAAACAGCTCTAGAGATTTAAATTCACATT
GAAATTCCCATAAAATTAATGAAATTCACGCCAAAAACACACAAATTTTT
GACAATGCATGTTTTTTAAAGACTAATATACTGGCTCCCGCATCTTCATA
TGGAAGGCGCATGGTGCATCATTCAAAATTCTGGCTCCCGCATTTGTATC
ACCAAATATTAAAAATATACGTTGTCCCTAGGAACGATTTTCATTGGTGG
GGAAAGGTGTATGTCCTATTTATACAGCTAATTATAGTCCCAACAGTCAG
TATGGTAGATGGCAGGGGGGGGTTAATTTCCCCAATCCACCTCTAAGGTT
ATGGGGAAGAAGGCGTTAGCTTGTTTTGGCTTGATGAATAAAGCGGCAGC
ATAGTTTTGGTATAGAAGAATGCTATTGATTTGATAGTGAGGCAAATCAC
TCGCTCTACTATTTGTACTCATCAGGCGTGTTGCGTTGTTGATGATCTTT
TAGAGAAAATAATAATAATACAACATGAGTTACTATACGTAAGTACGTAT
ATATGCTTCGTATCTTTCGTGCCACGAAACTGTTCTTAGATTGAGATGAA
AAGTAACGTATTCCTGATGAATTCAACCAATCAGCCGCACACACGTGTTT
TTTTTTTTACCTTTCCAAGAACACCAGGCAGATGGGGAAAGCTTCCCCAG
GTAGAGCAACCCAAGTTCCCACGCCCTATATGGTTGAAATGGACTCGACG
AGATGTCAATCAAAAAGATAGACAAGACTATTTCCCCTCACATTCTTCTG
CGCAGTAGTACGTCGCTCATTCTTCATCCTGCAGCATTCCTGTCTTCAAG
CTAATATTTTGAAGAATCTAGAGCAACTAGTACGGGAGTGAATTTTTTCC
AGACTCCTGTGGTGTTGGGCATGATGTGGAACATCAACAATACTTGTTAG
GTGGCTTTGGTCATTCTTTATAGTAGCGGCAAATTTGCCAATTCTTTTAC
GTAAATTGTAATTCATGTTAAAATAAAATTTTATCATGGCATTGGCTCGG
TTGTCGTGTAGCAGCAGCAGACCACCACCGCCATCATTTTTCCCGGGCGC
CTCGGAGAAGAGGAAGAAAATATCAAAAAGAAGAGGGAGAAGACAAAATT
TTGTATGTCCCAAATCAATCAAAGAAATGAAATAGCTTTATACAAAATTT
TGCTTGAAAGCATCTAGATACTTTTGTTTCAGTTTCAAAATATAGGGACA
TACAAATACGTAAAAAATTCAACATCAAAAATCGACAGGGTCACGAGTAC
TCGCTGACGAATTTCGAAAGGGTTGAAACTCTCGAAAACACCTAAACCTC
GCAAGACATCTAAACCTTGATTCCTCTACTGTTATGTAATAATTTGTGGC
TGAGTGCGCCACCAAGTCCGTCGCCCGCGGCGCATCCGCCGCATGGTATT
AACAGGGATAAACGGCCAATACATTGCCTGGTAGTGTGATCGAAGTTCAT
GTCAAAGAAGACTAGAGGAAGTAGAGAAGCATCCAAGAGAGATATTTTCG
CTTTTGGCCTGTCTTTGATCTCTCCAATAATTTGGAAAGTTCGCTAAAAT
AGGATTAGTCGACCATATCATATAAATGCAAATGAAATATCTCCCCACGT
CCGTTACCAAAATATTGACACAATGCATTGGTAATAAACTGTCCGAGGAA
GGGATGAAAATTTTCAAATCATTGCTTCGGCAAGAACAACAAATTTTGAA
AAAATGCTAGATCTTGCATTTACATCAATAAATACATACTTCAACCCTTG
AATTACTCCAATCCAGCCAAGGGTTGAAGAGTTGAAATATACTTATTTAT
TTTTAAACCTCAAAATGCTGGCTCCCACATCTCTATCAAAAAAATAAAAA
TAAAAAACTTCAACCCTCGAAATACTCCAACCCTCCAACCCACCTCGACA
TACATGCTAAGCTCAAAGTGAAGAAAAATAGTTATTAGTTCAGATATGCT
TTTGCACCTCTGCTCATGTCATTTGCATTTTCTCTTTTCTCTGTTTCATG
TTTCATCTAAAACTTCTGCTTTGCCTGGGAGACAGTGTGGCATTGAAGCT
GCTTTCTGTTGTTGGAGAGTTTCATGGCCAATGTTGTTCCATATCTGTGA
TGGGATTGTAGCTTCTTCTGTGTGTAATAACTATAGGGAGCAGCTGTCGC
CTGTGTGGCGGATTTGAACGGACTTCAGTTAATGAGCGTGCTATGGCCCC
GCCGCTTGTTAATATATGCTAGCCTGTCAGAGATGATCTTGTGGACTTGC
ATGTCATGGGAGGAGCAATCACTGGCTGCACGTTGCTCAGCGTCCCCCAC
CCTTGGCAATCGAGCAGCTTGCCGGTGAGGCCATCTGCCACATGGCCTGC
CTCCTACTTTCCAGCAAGGGAATGAAAAAAGCACACGAGTCCTTGCTGCT
ACTGTTCCTAGATTCAATCAAATGTTATTGTTGTCATGTAATTATTAGTA
GTATGTAGCACAGCAGGCCAATTTATTTAGACCACTGCGACAAACAAGTG
ATTAGAAGCGTGTCAATACTATGTACTAATATCTAGTGTGCGTCTGGTCG
TTCCTGTAGGGGGGGGTTCACGCCTCCTCTAGTGAGAGGAGATAGCCTAG
ACCCTGTAAACTAAAATAAAATCATCATCATCATATATATATAATATATA
TATATATATATATTTATACGTTTAAGCAATCATGAAAAATAAATCCCAAT
ACACTACTGTTGTTTCGCACTCATCGTCATATGTCTTTGGAGTTGTTTTC
TAAGTGGAGTGAAATTTTCGATGTGTTGTTGTTGATGAAGCACTTCATAG
TCGAGGTTGTTCCAAACTTGAGGAATTCTTACTCCCCAGCTTCTTCTGTA
AGTCTCCAGAGAGTTGCATTGAGTTTGTTGCGCCAGAATTGGATTCATGA
GAATAATCAATGACAGATTGATAAGGACACTTTTTATAACCCAACAGAAC
TTCATAAGAACTAAATATTTCGATCGAGATTCCGATCTTCTTCAGTATTC
CCAGCCGCTCTGGATAATTCAGCTGGAAAGTATACAAATGAAATTCTTCT
TACAACATCATGACCACACACCCCGCTGCTCGCTCCGGTCCAGCGTGTGA
GCTGCCCATGGGAGCACTGGAGCGAGATTACATTTTGACGAGAAGGAACA
AATGGAAACCAGAATCCTGGGTGAGAATCAAGGATGACACCCTCAGCCTA
TGGTGCCACTCAAGAGAGGAATTTGAGATGTTCAAGGAAGAACTCAAGAC
CCTGAAGTATAGGGATGAGATGTTCAAGAACATAGACTTCACCTTTGAGG
TAGAGAATGAGGTGGATGGCAAGCCTGGTATCCCATTTTGTGAGGTTAGA
CTGATGTGTGATCACGTAAAAGCTAGCAAAAGAAGAGAGGTATACAGGAA
ACTTTCCAATACCTATGTGTACTTGAATGAAAAGTCCAACGGTCCACAAC
ACCTGAAAGATGGTATTCTACGTGGTTTCTTACATAGAAATGATATTGTC
TCCAGCACGCCGGAGGCTCATGCCAAGGAGTTTGAGCTTCTGGCAAACAT
CTTCATCAGGAACGGATATGACCCGGAACGAGGGGACATGATCCTTAGTA
GCTGGGTGCCCAAGGCTGAGAGGGGCAACACCACCAGGGAGGATAGGGAG
ACAGAGACCCAAGGGCAAGAATAAGAGATTAGGGTGGTTCTCAAGGTGCC
GTATGTGAAGGGGGCATCTGAGAAACTGAAGAAAATCCTAAAAAAAGCCG
CAGGGGTAGATGTAGTCTTTGGTGGTAGTGTCTCAATCAAGCAAAAGCTG
TGCGCCAAATGGAGAAGCAGGGCACGGTCTACATGATACCGTGCAAAGAC
TGCTCCCGTCCATACATTGGTGAGACCAAACAACCTCTTGGAGTGAGGGT
GAAGCAGCATAGGGCTAAGACCGCAGCAGCAGACATGCTGAATGGGCCTG
CCTACCACACCTTCCACCATGACCACAAAGTGGACTTTGAGGGCACGCTC
ATACTGGATACAGAGAAGCAGCTATGGCTGAGAAAGACGAAAGAGGCTCT
GTTCATCCGGGCAGCAAACCCTGGCAGAGAGCTGGCACAGCTCATGAATC
AGGACCATGGCTATACCATCAGCAAATGCTGGGACTGGGCTATCCCAGAG
ATCAGGCGCAAGATGGAATGGGCGCAGAGAAAGAAGAACCCCAGACCAAG
CGATCATTCATGAGCAGCCAGCCTCTTCCTTGTTATCGTTGTTGTAGTCG
TTGTTATTGATAAAGTAGACCTACTGTCGCTAGCGATTAGCTGTTTTTCT
TCTTCTCGTCGTGAATTGATAGTTACTTCTTCTCCATCTGTCTTCTTCTT
TTGGTGCTACTGTTGACATTACTTCTCTCCTTGACGTTGTTGTTGTCATC
CTATCATTTTGGCGGGTTTTCGTCAATTTTCTTTCCTTCTTTTTATCTTA
GTGTTTTCCGTTGAATATTTTTGGGAGAAGGCATCCTCCTCCTCTTGTCA
TTGTTGTGAGCACAAGCGAGCAGTGGGGTGTGTGGTGATGATGTTGTAAG
AAGAATTTCATTGGTATACTTTCCAGCTGAATTATCCAGAGCGGCTCGGA
ATACTGAAGAAGATCGGACTCTCGATCAAAATATTTAGTTCTTATGAAGT
TCTGTTGGATTATAAAAAGTGTCCTTATCAATCTGTCATTGATTATATTT
AATATGTGTTGAGAAATGGCAGATTGAGGTGGAAGGGTTTGAAGCTAGGG
GCTTTTCCCCGAAAGCGGTTTGAAAGGCAAGAAGACTTTAGACTAAAATT
CATATCATTGTCATCATCTAATATAATGAGCAGAAAACATGGTCATTGGA
AGCAGGATTCTAATAATATATCATCTGAGCCACTGTGTTGCTATACTACT
CTGTGACTACTGTGAGCCACTGTTGTTGCTACTACTTCTTGCTGCATTGA
TGAAGTTTTTTAACAAGACACCACCACAAACAAACAAACAAAAACAAAAA
CATATACTTGATGCTGTACATTTCATGAAATTATGCTTTTATATATATAT
TTGTGTCATTCAGGTAAAGGAAACTGGCTTGTGAAGCCAGGGCGAGTGTC
CAACGGACAGATCATACTCTCTGCACGCTGGAAAATCAAATTCAATGATG
GTAAGTCGTTTCTGATGAAGAATGAAAATTATGAATTTCTGTCCCGCTGC
TGCTTAGCATCATTCATCATTGAGTATTTGAAACGAAAAATATACTGCGG
ATCAAACTGGCAAATATGCTATGGATCTAAGAAGCAGTGGTGAGATAAAA
CTTTGCAGCAGCATGATTTTATAGAAGCTTAATTTTATCCATAATGAAAT
CTTGTGGACGAATCAGTGAAAAAATTAAAGGAGCATTATCATCATAGCAA
TCACAGTTTTACTTTTTGTTTGGCTGGAGTAACACACTTTCTGATGTGGT
TTGAAATTAATTGACTCAGTGGAATCAAATACGTCACAAGCTAATGCTTG
CCCAGAGCTACAGTTGTTGAATTCTTGCTGTAGCTCCTGCATTCATGTAC
AGTATCGATATGGTCTTTGTTGTATTTCAACCTCCTGGTTTATTTCAACC
CAGCCAAAATGTGAGGGTTGAAATAAATCACAGCACCTGCTTCAGGTTGC
CCCCGTGCGGACAGCACAGGGCATGGTCCGCAGTGAAAGGTTCTCCACAG
CCATTACACTGCGCAGGCAACTCCTTCAACTACCACCCAATCTGGGTTGC
CAGCCGGTGGTCGCGCCACTGCTGCTCACCAGAAAGGTCAAACAAGTGTT
CTACCGGAAGCAGCGCATTGATACGGGCCATTACTTTGGAGTCAATCTGG
GCCCAGATCCTCATCATCTGCCTATCTGGCTCCATCTCCAGCAGCACTGC
CGCCTCCAGTTCCGCCTTATGATTTGCCTCTCCTGCTGCCAGGTGCTCCC
AATACTTCGTGCCATGAAACGCAGAATGGCCAGGATCATTCCGACCGCTG
GCCCTCCTGTACGGCCTTTTTCACCCTTCTTAATGTTGTTGATCACAGTT
GTCGTCGTCGATGATCAGCTCTTGTTTACTGGTACTCCAGGTTCTACAGT
GGTGTGGAAATCAGTAATAATATGGTAGTGGTTGATTGGCAATTGTTGTG
GGATGTTCAGTCCCAAGTGTAAAGTTTGATGGTAACCTTTTTTCTTTGTT
CTTTAGTCGCAGACGGCATTCGGGTATACTACGTTGTCGTTTTTTCCTAC
GTTTTAGCAGAGTGACAAACTACTTATTGTAACTGTTGCTACGTCTACCC
ACTATTACCCATGTGTGTGTGCAGTTGTCCTTTAAGAGGGAGGTATCCAT
GTTTTTGCTACTGTTGGAGAGCGGGGTGCTTAGGACCATTCCATATGCCT
GGGATTTGAGCTCTGTACTATCTTTTGAAAGTTGCCAGGGATTTTGGTGG
AAGGTGAACTGGTTTCAGTTGATGAAGGTGCTGTAAGCGTGCTGCAGCCA
GCCGAGCTGATCTCCAAGGTTTTGAGGCAGAGAGGTCATCAAAGTCTAGT
GTCGAGTTGTGAGCCATACCACGCCCTTGCCCATCCAGTAGCTTGCAGGT
GAATCCATCATGTGGCATACTGTACTCTTCTACTTTCCAGCAAAGGGGGT
AGCGAAGACGGGTCAGGGTTGCAGAGCAATGCCACAGCACTCTTTTGAAT
TCAATCTATCTTCTTCAAAAGGCTTTCTAACACTCCCCAGTATGAAAGGC
TACTATGCTTAATCTTTGAGCGCACAAAAGCTTTGTTGTAGGCCCCCATG
ATGCTCTTGTCGTCAAGTATGTGGCTCATCCTTCTGATTGCTCCAAATAA
GCGCTTGCAAGCATCTGAAGCTATATTGCTTGTACTGTTGCGACCAGTTC
CCTCTAGGATCTATCTAGTCAAACCCAGAACTGTCATCTCCTTCTCCTTG
CCTGCTGTTTTTTCCCAAGTTAAGAGGAGGGTGAAGCTTCTCCGTGATCT
TCCACCACGGTTGCTTGGGGTCAAACTCTTGCAGCCACTCCTTGCCAAAG
AGATACAACTGATGTAGGTCGGTGTCCGCTGCGCCAGCCGCGCCGCCCGC
TCCTCCCTCTCCACCTCTTTGACAAGAGTGAGATCATCAGCGTAGAACTG
GCATGCCTTCCACAGAGCCGCGCGCACCAGTTGGGGAACGTTCTTCGCAA
AGTGGTTCAACTGAAAGTAGGAGACCAGATGGCCCCCTGCAGAATGTCAA
ACTTGATACTCGCATGCCCATAGGCCTCGCCATTAGAGGCAACAAAGAGT
GGTGTTCAAGAGGTAGAGCTCTCAAAGAGCTTGTAGGCCTTGGCGCGCAC
TCCTATAGCCCTGAGATGTGCAGGAAGCCCACGCCACCAACCTTGGTTAA
AGGCCTCCTTGAAATCAAGGACGACTGTCCGCGCTATCTTTTAAGCAATC
TAGTGTGCCAGAATGACACCTACATCTAGAGTGCCTGTACCAGGAATGAA
CCCAAACTCTCTTTTGGGATGCGTGGAAGCAAAAATGCACTGAGTTGAGG
CATCATCACCCTCTCAAATGTGGTGGCCAGAGTAGCACGGAAACAGACTG
GTAGTTTGGAGGGTCTGGCATCTCGTTTTTTAAATAGATCTATAGATGGG
TATAGATAGACGTGATCTGTGCCACCTTGTTGCAACTCTTCTTAGGAAAC
TCAGCCGCCTTTGCCACTTTCTGGAATAGATCAGTCAGAATGGGAGGACC
AGCTCTTATGCACAGTGCTTGAGGAGAAATGGACTGGCTCCATCAGGGCC
AACCAACTTCAGCTCATTCAAAGAGCGGAGCACCTTAGCAACCATAACAC
TAGGGAGCTTCATGTAGTGAAACTCAAAACATAGATCTGGGGGCGATCAT
CATTTCTCATGTGTGGTAATGGTTTGTCACAATCTTTTTTGCAAATAATA
ATTTTATCATTTGCCGTATAGTAGTATGCATGTTTTTATTCTCTGTGGTT
TTTGGCATTCTATCTGTCCACATTTTTGTTTAAACTATCATGGTATAGTA
ATCTTGATTGGGGTGAATTTCCTCATCCCTTTTTAAAAAATTTAGTGGAA
GTCCTGCTGAAATTTTGGAGTAAGGTAATGTGCATGCCATTGCTATTTTT
TTTTTTCTAAGGTTGCAATTTTTTCAATGTGAGACTGTTCTTCTTGAGTC
ACGTCAAGTCAAAAACAAAAAAGTGAAATGAGCACTTGTTTTCACATCAG
CTTCACATCACTGATGTGAAACATTGGTAGTTTTTTGGTCGTCCTTTCCC
TTCCCGTTGTGACTCAAGAAGAACAGTCTCACGCTTCAGCCACACCAGCT
TCGGTGAAAATTGCCGTAGGCTCGTTTTCGCAGATGTTAAAAGGCGCACC
CCAGGAATATATATTGATTTTTCTGCTTATCTTCCTCTTGGTGCATCAGT
ATACCCACCTAGTATGGTAAGTGTTGGGCAAGCATGCAACGTGAGGTAGC
TGGACCACAGTCTATGACCCCTTGCCAACTGTGGTAGTGAGGCCGGCTGT
ACGGCGATCAAGGAAGGAGCAGGGATGGGTCACCGCGGAGATATACGCGG
GGTCCGACATCGTCGTCATCATGATTAAATACATGTAGAAGAAGAAGACA
GAATAGAAGCTGGGAGAATAATAGCAGAGCAATTGTGTGCAGCTCCTGCA
GCTCCTGATGAGCCGCCACCTTTCTCCATTCACGTTTATCCATGAAATAT
ATAAGACGTCCAAAAGTCCAATGGTGTTAGAGTGAATCACATTGCAAAAG
TTATTGGCCCACTCACGGCTGATTCTGCGCAGCAGGCGCAATCCCCAATA
GCTGGGCCGCCACAGTGGCCAGTTCGTATTCTGGAACGTTCGGGTTGGAA
CGCTGCCTCATTCGCCCCCGGGGGGGCAAGTTCTTTTCAAGGGTTTGGGG
CAAATTCGCCACTGTATCACCCATCCAGAATCCATTCACAAATCCACTGA
TGACTCCACAGGGAGGTAAACCACTACACTTCTTCTGCATCGCCTCCTAC
GGGGGCCAATCCTTGATCATTGCGCGAGAAGAAGCGTAGTGGTTTACCCT
GCCCGTGCCATTGCGGACGACGGAGCGGGCGCCCCCGGCCTGTCGCGGGC
GCGGCAGCTGCAGGTGGCAAGCACGCCAATTACGGCAGCGCCGTCAAGTA
CGGCAGCCCCAGGGTGGCACCGGGGCTGCGGCGCCCAGGGCGCGCCCTGT
GCATCCTGTGGGACAGTGCTGTTATGCCGGGCGAGGGGGAGTGCTAGTTC
TTTATCATCCGGACACACTCCTGGAGAGGAGAAGCATCTCAGCATCCAGC
GGGAGAGCTGGTGCGACCGGCCTGGAGGAGCGTGCTACACCCTGGGCAGA
GCGGACCCTGCCATGGGCAGTGGGGGCCGAGGCGGCCACCACCAAATTCA
AAGTGGACTAAGTGCCTGACCGGCCGCCACGCTGGGGGCAGTCGTGAACT
GCACCCCAGTCACCCAGTGACACCAGCTAGCTTGGATTTGAGTGGTTCAC
ACTTCTGTTTCTGTAGAGTCCAGGTGAGCAGGGGGGGTGTTCGGCAAGCA
TGCAACGTGAGGTAACCGGACCACAGTCTATGACCTCTTGCCAACTGTGG
TAGTGAGGCCGGCTGTACGGCGATCAAGGAAGAATCAGGGACCACAGTCT
ATGACCTCTTGCCAACTGTGGTAGTGAGGCCGGCTGTACGGCGATCAAGG
AAAAATCAGGGATGGGTCACCGCGGAGATATACGCGGGGACCGACACCGT
CGTCATAAATAAATACATTGTAGAAGAAGAAGACAGAATGGAAGCTGGGA
GAATAATAGCAGAGCATTTGTGTGCAGCTCATGATGAGCCGCCACCTTTC
TTCATTCACGTTTAATCCATGGAATATATAAGGCGTCCAATAGACCAAAG
ATCTTAGAGTGAATCACCACATTGCAAAAATTAGAATAATGAAACCCTAT
ATATATGATGATGATCATGTCACAACATGTGTGTGGTGTATCTCTCGCCA
CCACCACCAGGAACAACTTTAATTTACAAAGGGGACGTGGACGTCACAGG
CCGGCTCCGTGACCGTCCTGATGCTTCAATCGATGGGGAGATCCTTATTC
CGGTGAAAACACAAGCTGGAAGTTTGTCAGAGAAAAACTCGGGGCTGAAA
TTTCAGGCGGACTACCTGAAGGTCGGCTCTGACTCAGAAAAACTCTGATG
ATGGTGATGATGATTACTATAAATGAAATGAAAGTGGTTTTCATTATTAC
TTATTATTACTGATGGTGGTGGTTGTGGTGAAGTAGTATGGATCATTTTT
GTAAAACAATCTTCTTCTAGTAAATGATGGTATGACTCT
back to top

Coding sequence (CDS) from alignment at H-akashiwo_Contig10:2838725..2853613-

>mRNA_H-akashiwo_Contig10.60.1 ID=mRNA_H-akashiwo_Contig10.60.1|Name=mRNA_H-akashiwo_Contig10.60.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=825bp|location=Sequence derived from alignment at H-akashiwo_Contig10:2838725..2853613- (Heterosigma akashiwo CCMP452)
ATGAAACTTGTCGAGCCTTGTTTCGCGCCTAGGCTTATTTTACTCCTTTT
TTGCAGTGGGTGTTTGTTTTGGGGAAATGCATTCAAATCTGAATGCAACC
AAAAACAACAATGTCAGAGAGCTACACGTTGGCCTCTAACTGAGTCAAAG
CCTTTGTGCCATGCCATCATCGAGAAGAAAGACTTGAACGACGGTTCAGC
GCAGGAGATCCATTTGCAACAACATCGAGGCAGAGTGTTAAGGCAGCGAC
TGGCGATCTGCCATTTGGCTTTCTTTTCTTTTTTTTCAGGCATGCCTTCT
TTCGCAGCTACAAACCCTTACACGTCAGGTGTTCCTCTCAACCAAATAGA
AGTAAAATCCTACCAGCAGCAGTTAAGAGAAGCAACGCCCTTGAGCACAA
TCAGAGGCACGTGGCGGCTGCGGGAGTTCCGCCCGGCGCGCGAGGGCGGC
CTGTGCCGGGGCACGGTGCTCTTCCGCGGCTTCGAGGACGAGCCGAAGGG
CACGCTCGAGTACGCGGCCGCGCCCGGCGGCGGCTGCGAGGGGCGCGCCG
GTAAAGGAAACTGGCTTGTGAAGCCAGGGCGAGTGTCCAACGGACAGATC
ATACTCTCTGCACGCTGGAAAATCAAATTCAATGATGGAACAACTTTAAT
TTACAAAGGGGACGTGGACGTCACAGGCCGGCTCCGTGACCGTCCTGATG
CTTCAATCGATGGGGAGATCCTTATTCCGGTGAAAACACAAGCTGGAAGT
TTGTCAGAGAAAAACTCGGGGCTGAAATTTCAGGCGGACTACCTGAAGGT
CGGCTCTGACTCAGAAAAACTCTGA
back to top