mRNA_H-akashiwo_Contig10.55.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig10.55.1
Unique NamemRNA_H-akashiwo_Contig10.55.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig10.55.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig10contigH-akashiwo_Contig10:2680195..2684258 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size479
Hectar predicted targeting categoryother localisation
Exons5
Cds size465
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig10.55.1prot_H-akashiwo_Contig10.55.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig10 2680195..2684246 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387041.3659115-CDS-H-akashiwo_Contig10:2680194..26802381681387041.3659115-CDS-H-akashiwo_Contig10:2680194..2680238Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig10 2680195..2680238 -
1681387041.3751757-CDS-H-akashiwo_Contig10:2680505..26806291681387041.3751757-CDS-H-akashiwo_Contig10:2680505..2680629Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig10 2680506..2680629 -
1681387041.3860934-CDS-H-akashiwo_Contig10:2681528..26816361681387041.3860934-CDS-H-akashiwo_Contig10:2681528..2681636Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig10 2681529..2681636 -
1681387041.3958259-CDS-H-akashiwo_Contig10:2683872..26839591681387041.3958259-CDS-H-akashiwo_Contig10:2683872..2683959Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig10 2683873..2683959 -
1681387041.404309-CDS-H-akashiwo_Contig10:2684144..26842461681387041.404309-CDS-H-akashiwo_Contig10:2684144..2684246Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig10 2684145..2684246 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387041.4127686-UTR-H-akashiwo_Contig10:2684246..26842581681387041.4127686-UTR-H-akashiwo_Contig10:2684246..2684258Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig10 2684247..2684258 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig10.55.1

>prot_H-akashiwo_Contig10.55.1 ID=prot_H-akashiwo_Contig10.55.1|Name=mRNA_H-akashiwo_Contig10.55.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=155bp
MEKESAEEVPQKRRKPPRVIEVASRYSQSSQNKQPATARSNSNASTAQLN
RAGKKMGGNKESQSLGRVSTVGTPLAKERRSSLKVSQSRHAQPTSVLAES
KNTPRARSTPQVPASRSRQSVASRYRSSNPAKLPKESNFKGSAGAPGRTA
TRQGG
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mRNA from alignment at H-akashiwo_Contig10:2680195..2684258-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig10.55.1 ID=mRNA_H-akashiwo_Contig10.55.1|Name=mRNA_H-akashiwo_Contig10.55.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=4064bp|location=Sequence derived from alignment at H-akashiwo_Contig10:2680195..2684258- (Heterosigma akashiwo CCMP452)
CGACAGAGAAAAATGGAAAAAGAATCAGCAGAAGAAGTCCCCCAAAAGAG
GAGAAAGCCTCCTCGGGTAATTGAAGTTGCTTCGAGATACTCCCAATCCT
CTCAAAACAAACAGGTACACCGTGCATGATATATATAGTACACAATATCA
GGCATCAAGTTGTGCTCAAAGATAACAGTATTCCTCCGTTTGGTTGTGTC
AAGAGACAGATTACTGCACCACTATACTGGCCATGGTTACCCTTATCATC
AAATGGCAACGGTTCCAAACTAGCTGGTGTTATGTCAATGTTTTCCCAGC
CCGCCACTGCAAGGAGCAACTCAAATGCTTCCACAGCTCAACTGAACAGG
GCTGGAAAAAAAATGGGAGGGAACAAAGAAAGCCAGGTTGGTGGTTCCCT
TGCTCTGTTACTTGAGCGTGACAGTGTATAAAGAAATGGACCAAAACTGT
ATGCCATATTTATCCCCCCCAACCAAGGATTGATTGGTGCATGTCCTGGA
GGGTGGGAGGGTTGGAAAGGAACAACTACAATCCAAAAAAATCCACCTGC
TTTTGAGCAATTTAAACCTTTTGGCAATCTATAATAGTGTATGCAGAAGT
ATTGATCTTCCTATCAAGAAGTGGAAGTGTGAATAATGAGATATTTTAGT
GCTCATCATCACACCTAAAAAATGAAAAAGAAATAAAGTATAGTTGAGTC
CATTGCATAGTAGTGTTTTGGCCTGGACATGACTCCAACATAACAGCAAT
CCATACCTACTACCTTGTAGGCACATCATGAGCCCATGACGATGATAATG
ATGATTTTGATTTATTTAAGGTCCAGCCTCTCGGATAACTATAAGGACCG
AAGTCCCGGCCTCCATATGCGGACCCTGCTGCGTCTAGGTGCCACCTCTC
ACTCCTATTCATCACCAAAACATTAAGAAATCTTCGACTTCCAACTGCCT
GCCCCCCTTCTAATTACCAGTCTCTCCCCCCCCTCTACTCCCATGCCCCC
AAATGTCCTACCCACTACAGAGAAGAAATATCCAATTTTACTTCCAGCTG
CGCATCTTCCCCCTGCGCCCGCCGCCCCTTCCCCCTGCTCCGTTTGCCCA
AAATATGCCCTCTAATCCCAATTGGTGAAGGCCCATGGTCCCTTAATGCC
CATCCGCTCTAGCTTCTTCCTGAAGTACTTCTGCCCTGTCTGGGCGTCGC
ATCGACCCCACCCTTTCCCCTCACCGCAGAAGTGACAACCCCATGTGACG
ATATTTTTAAGAATTATTGATTTAACGGCAATGACATTATATATTCTGGA
AAGTTCTGGCAATAATGGACTGCTGGAGGGCAGCAGGACTCGTCTGGCAT
GGGATCTGCCCACTCTCTAAATTTTACTAGAAGCAACTAGCTTAATATTA
TTGTAGAGCTCTGAGTAGACAGACATGACTTATCTTCCAAGCAAGCAAAA
TGTCTCCTGGTCAATTTCCCTATAGTAACACTAATTTTGCTCGCTTGACA
CAAGCAAGTCCCCTTGACGGACTTTCTTCTGAGATAGTTTTCTTTGTGGT
CTACAAACTTCGAACAATTCTCCTGTGATTTTTTTTTTTTTTTTTTTTTT
GTATACGTTCTACTTGCAATGCGTTCCTTCACATCCTGAACCACACAACC
ACCGTCTATTTGCAGGCTGCCTTGACATCTGATGCATTTCTTCGGATCAA
GTCTGATTACTGACCAGCTTTGGAAGTTCCAGCTATCCTTAACCCCTACA
TGCTCTATTGTCCTTGGCCTCATCTCCCTCTTTCAGTTGTCTCTACCGTA
GGCGCTTCCTCCGACAACTCACATCCTTCGACGAGTGCATCTTCTCCTTC
CCGCGGGTCGGGATGGTATCACCAAGACTGGCTTCGCTGATTCATCTGCA
TGTTTTTTTTTTTAGCAGCTAATGTACCTATTGCGGTATAAGTGTAGGGG
CAGGGGCCGAACCACAGACAGCTGAGCCGGCTCATTGAAGTTTGGCTGAT
CAAGGACGAGGCAGCCCTGCTGCAGCATGATATATACGTTTTGATTGTAC
AGCGTGTGGTGGATGCATAAACATGTATGTGTTTTGAAGAGTGGAGGGAG
GGTGTCATGTTTGCTTCACACGGACAAAGACTCATTGGAGAGGGAGGAGG
TGCAGATCCCAGAGGACAGAGGAGTACTTGAAAGCAGCAGTAAAGACAAT
ATTAATTACACCAAAGATTATTCTCAGAGGTGTAAGCCTTTGAAGATTTT
GTTGGCTAAGCAATCAACCGCAAGCACCCATGCTCCCTTCGATGCCTCTA
TCACCCCTCCCTCCGGGACCTCCACGTTCTCTAGCTCCTCATCCCAATCC
CTCAAAAATCTTTTCCATATCCGTCCGTTAAGGGTAAAAAAAAAAAAGTC
CGACAAAAAAAAAAAACTTCCTCCACTCAAGACAGTTATTGCATTATTAC
CACAAGCCCAAACCATCTTCAACTACTACGATTTACTATGTTATGCATGT
ATTTATTTGAATGAAATGAAGTGTTTTTGCTGACTTGCATATTTTGATCA
TTTGGGGGCTCGCCCAGTATTCAATTTGCTTATCGTACTCTCCGTGGTGA
ATTACCTACCAAACCTTCCCAGTCTCTTGGTCGAGTAAGCACAGTTGGCA
CACCACTGGCCAAGGAAAGACGCAGCAGTTTAAAGGTGTCTCAATCTCGG
CACGCCCAACCAACAAGTGTTCTGGCTGAGGTGAGATCAACAATAATAAT
TTCTCAACGCTTTTATCAGATGTGTGAGCAATATCTTAAATAACTAAAAA
GTAGTACCCAGAAAGATGTCATGAAAATAGGGGCTACTAGCAGCTAGTAT
TGAATGTACACATTTATAGACAACGGTTATTATAACAGGAGGATTTTTTT
TGTGGTATAAGAGTTTCCTCCTTGATTTCGAAGCAGAGACCGTGCCGTGG
AAGTGGAATCCCCCCATTTTCCAGAACAGTCATCATTGATGGTAACAATA
GTCTCGAAACAGCTCCAGAGCTCTGGCTCCGGATCGGGTGCTTCACCTGA
GATCGGGTGGCATGCGGCTCAGTTTGCTGCCTATGTATGTGATCTTGAGC
AAACGCAGTCGCGATTATACCGTGCAGGCCTGCATGCAGGAAAGGGGGGC
ACTTTTGAAAAAAACATTGCCCACATGTTGACAACATGCTGGCGCAATGT
CTAAGAACACGTGTTTTTGAATGATGCCAGTAAAAAAAATAACATGTCTG
AGTGACCACTGCGATAGGGAGTACGAGAATGTATATTAAATGAAAAGAAT
GAGGATTTGCAGGATTTTGCTTGCTGCATGTACCACGATGTGGCGAGAAA
ATAATGGTTATGACACATGAAGCCTAGATCAAAGAAAGTGTAAACGTAAA
TTTTAGAGAGGTACATATATGTTCCCAGTTCTGGGAAACATCGGAAAACA
AAACAAAGTATGTATGCTTTGAGATAGTATTGGACTGGTTATGGTGCATG
TTGGGAATAGTTGTCCTCCTCCTTGGCAGTCGCCATTGGGAAAATGTGCA
AAGCAAAAGTTGATGATGATGTTTGTTATAATGTGTCGTTTGAAAATGTG
GTACGTTCACTGTTTTGGTTCACACGCAGAGTAAAAACACACCCAGAGCT
CGCAGTACGCCACAAGTTCCAGCCTCAAGATCTCGCCAATCAGTTGCCTC
TCGCTACCGAAGTTCCAACCCAGCCAAACTACCAAAGGAGTCCAACTTCA
AGGGTGAGCACACCTGCTCTGACTTTTCCTGAGTTTCCATAATACAATGC
AGTGTATATGAATTTCAGAAAGATGCTGACGTACTATACAGGCGCTAAAT
AAAATAAAAACACTTTCATGATTTTCGTTGCAAGCCCACCTTGTTGGGCT
TTACACAGTTCCTCTGAGGTACGCCTCCTCCTGCTGCTTTGCCCAGTGGC
GCGCTGTCTTCGCCGACCGCCGCTTTTTGTCGCTGCTCTCCTCCCCGGGC
GGAAGGGCAGCGCACCGCAGGCAGCGCTGGGGCGCCGGGCCGCACCGCGA
CGCGCCAGGGCGGC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig10:2680195..2684258-

>mRNA_H-akashiwo_Contig10.55.1 ID=mRNA_H-akashiwo_Contig10.55.1|Name=mRNA_H-akashiwo_Contig10.55.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=465bp|location=Sequence derived from alignment at H-akashiwo_Contig10:2680195..2684258- (Heterosigma akashiwo CCMP452)
ATGGAAAAAGAATCAGCAGAAGAAGTCCCCCAAAAGAGGAGAAAGCCTCC
TCGGGTAATTGAAGTTGCTTCGAGATACTCCCAATCCTCTCAAAACAAAC
AGCCCGCCACTGCAAGGAGCAACTCAAATGCTTCCACAGCTCAACTGAAC
AGGGCTGGAAAAAAAATGGGAGGGAACAAAGAAAGCCAGTCTCTTGGTCG
AGTAAGCACAGTTGGCACACCACTGGCCAAGGAAAGACGCAGCAGTTTAA
AGGTGTCTCAATCTCGGCACGCCCAACCAACAAGTGTTCTGGCTGAGAGT
AAAAACACACCCAGAGCTCGCAGTACGCCACAAGTTCCAGCCTCAAGATC
TCGCCAATCAGTTGCCTCTCGCTACCGAAGTTCCAACCCAGCCAAACTAC
CAAAGGAGTCCAACTTCAAGGGCAGCGCTGGGGCGCCGGGCCGCACCGCG
ACGCGCCAGGGCGGC
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