mRNA_H-akashiwo_Contig10.53.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig10.53.1
Unique NamemRNA_H-akashiwo_Contig10.53.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig10.53.1 vs. uniprot
Match: A0A0G4GCP0_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4GCP0_9ALVE)

HSP 1 Score: 334 bits (857), Expect = 1.650e-105
Identity = 186/428 (43.46%), Postives = 258/428 (60.28%), Query Frame = 1 
Query:    1 TFSIFNDSPVLVENMRVSQRQLANQGQLNGFRSSAVQFITVKPGETVQVTMGSHAYGFAVDPTTRTALLNVGGVKWDSGSDSEGHTDSVQRIDSSMNGVTYRICMDESCPPLTPDELTSAKRLVQSMVEGVYVEGPPIGRQLAAKAEPSSVWWHIVTDIGRDGTDDEIVRRTKDMINAGMTRDMTTHWGPLYDKHPRQKTVQPGAATAADVVAGGVYTVEVYHRALDRCPGGNENNHIVKHKYTSNLNGPGGRDHPLALAASLTALHWYEFDVSMFITPEPITRNATVTEQFESAVVAPLIAAFEGDPVYGRDVVCTIDDPREDCEQVDTEWSSIEVMLFDSSGQLISRIHRRARLINDRYVPIAMMPPEAQAPPPVQAVLDGVQSVLGVGTVKGWYDNDADTA-LGNYKLHRWDYLGSV---TPIYF 1272
            +F IFN +P  +E+++VS RQ+ +QGQ   FRS+  QF+ V PGE + VT+   A+G   D +T TA     G++WD      GH ++ Q I    +G  YR+ +D+ CPPLT +EL  A RLVQ ++EG     PP+      +  P  +W +IVT +GRDGT+D I   T+DMI     R M+T+WG +YD HPR++TV P A   +DV+A G Y +EVYHRA+DRCPGGNE+  ++KH +   ++         A   SLTA  +  +DV  ++  +P  R+      F S+V A L+  FEG     RD+VCTI+DPR  CE  +TEWSSIE++L D  G LI+R+HRRARL  D+ VPI++MPPEA A   VQA+LD V++ L +GTV  W +     A L       WDY+  +   TPIYF
Sbjct:   15 SFRIFNGTPEGLESLQVSFRQV-DQGQR--FRSTGNQFVNVPPGEWITVTIPPTAFGIPTDLSTLTAKFRKYGIRWD------GHPEAGQSIQP-QDGGEYRVGVDDECPPLTSEELARAARLVQDLIEGALNATPPLYG--TPERPPPEIWRYIVTQMGRDGTNDRIAANTRDMIGDSGFRSMSTYWGGIYDSHPRKQTVSPSAPNPSDVIASGEYKIEVYHRAMDRCPGGNEDIQVIKHTFRPAVDP--------AQDPSLTAFIFQNWDVMAYMHTQPKPRDPAKAAAFSSSVPAALVRIFEGSQ-ENRDIVCTINDPRPHCEVRETEWSSIEILLKDPEGNLIARVHRRARLTEDQNVPISLMPPEAPASESVQALLDRVEAALRMGTVCEWSEEGHMAADLRGAVTEEWDYVAGIYGFTPIYF 421
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig10.53.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0G4GCP0_9ALVE1.650e-10543.46Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig10contigH-akashiwo_Contig10:2644886..2646630 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1745
Hectar predicted targeting categoryother localisation
Exons1
Cds size1305
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387043.3930964-UTR-H-akashiwo_Contig10:2644885..26449271681387043.3930964-UTR-H-akashiwo_Contig10:2644885..2644927Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig10 2644886..2644927 +
1681387043.41261-UTR-H-akashiwo_Contig10:2646232..26466301681387043.41261-UTR-H-akashiwo_Contig10:2646232..2646630Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig10 2646233..2646630 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387043.4031947-CDS-H-akashiwo_Contig10:2644927..26462321681387043.4031947-CDS-H-akashiwo_Contig10:2644927..2646232Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig10 2644928..2646232 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig10.53.1prot_H-akashiwo_Contig10.53.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig10 2644928..2646232 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig10.53.1

>prot_H-akashiwo_Contig10.53.1 ID=prot_H-akashiwo_Contig10.53.1|Name=mRNA_H-akashiwo_Contig10.53.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=435bp
MRVSQRQLANQGQLNGFRSSAVQFITVKPGETVQVTMGSHAYGFAVDPTT
RTALLNVGGVKWDSGSDSEGHTDSVQRIDSSMNGVTYRICMDESCPPLTP
DELTSAKRLVQSMVEGVYVEGPPIGRQLAAKAEPSSVWWHIVTDIGRDGT
DDEIVRRTKDMINAGMTRDMTTHWGPLYDKHPRQKTVQPGAATAADVVAG
GVYTVEVYHRALDRCPGGNENNHIVKHKYTSNLNGPGGRDHPLALAASLT
ALHWYEFDVSMFITPEPITRNATVTEQFESAVVAPLIAAFEGDPVYGRDV
VCTIDDPREDCEQVDTEWSSIEVMLFDSSGQLISRIHRRARLINDRYVPI
AMMPPEAQAPPPVQAVLDGVQSVLGVGTVKGWYDNDADTALGNYKLHRWD
YLGSVTPIYFGDPFAKTPARVTTGTASGTPEDET*
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mRNA from alignment at H-akashiwo_Contig10:2644886..2646630+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig10.53.1 ID=mRNA_H-akashiwo_Contig10.53.1|Name=mRNA_H-akashiwo_Contig10.53.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1745bp|location=Sequence derived from alignment at H-akashiwo_Contig10:2644886..2646630+ (Heterosigma akashiwo CCMP452)
ACTTTTTCCATATTCAATGACTCCCCTGTCTTAGTGGAGAATATGCGCGT
GAGCCAAAGACAACTGGCCAACCAGGGCCAGCTCAATGGTTTCCGTTCGT
CCGCTGTGCAGTTCATCACAGTCAAGCCGGGTGAGACGGTGCAGGTGACT
ATGGGTAGTCATGCATATGGTTTCGCCGTGGACCCGACTACACGCACCGC
CCTCCTCAACGTGGGTGGTGTCAAGTGGGACTCTGGCTCTGACTCGGAGG
GGCACACGGACAGTGTACAGCGTATAGATAGTAGTATGAATGGCGTTACC
TATCGTATCTGCATGGATGAGTCATGCCCGCCACTGACCCCAGACGAGTT
GACCTCTGCCAAGAGACTCGTGCAGTCAATGGTGGAGGGGGTGTACGTAG
AGGGTCCGCCCATAGGCCGACAGCTTGCCGCAAAGGCAGAACCTTCGTCG
GTCTGGTGGCACATTGTAACCGATATTGGTCGTGATGGTACGGACGATGA
GATAGTCCGTCGTACAAAGGACATGATTAATGCCGGTATGACACGAGATA
TGACGACACACTGGGGGCCACTCTACGATAAACATCCTAGACAAAAGACC
GTACAACCTGGCGCCGCCACTGCTGCAGATGTAGTAGCAGGGGGGGTGTA
CACTGTGGAGGTGTATCACAGAGCCTTGGACCGCTGCCCAGGCGGGAACG
AGAACAATCACATTGTCAAGCACAAGTACACCTCAAACTTGAACGGCCCG
GGCGGGCGTGATCATCCACTGGCACTGGCAGCGTCTCTTACAGCCCTGCA
TTGGTACGAGTTTGACGTGTCTATGTTTATCACACCTGAACCAATCACAC
GAAATGCCACTGTGACAGAGCAGTTTGAGAGTGCTGTTGTTGCGCCATTG
ATAGCGGCGTTCGAGGGCGATCCGGTCTATGGGCGTGATGTGGTGTGTAC
AATCGATGATCCCCGTGAGGATTGTGAACAGGTTGACACGGAATGGAGTA
GTATCGAGGTTATGTTGTTTGACTCCTCTGGTCAGTTGATATCACGTATA
CACCGCCGTGCTCGTCTAATTAATGATCGATATGTACCTATCGCTATGAT
GCCCCCTGAGGCTCAGGCACCGCCCCCCGTGCAGGCAGTGTTGGACGGAG
TACAGTCAGTGCTGGGTGTTGGCACTGTAAAAGGGTGGTACGACAATGAC
GCCGACACTGCATTGGGTAACTACAAACTGCACCGGTGGGATTACCTCGG
TAGTGTGACTCCCATTTACTTTGGCGACCCATTTGCCAAGACACCTGCAC
GTGTTACCACTGGCACTGCCAGTGGCACCCCAGAAGACGAGACCTAGTAT
TAGTACTAGTAGTACTATAGTAGTAGCAACACTATTGGCACTGGCACAAT
CTTTTCGCTCTTGGCGGGGCCTATGCCAACACGTCCACTACGGACACTGG
CAACGGTGATGCTGGCGCATTTGTTACCGTCTCCGCTGGAGACTTTGACA
AAGACCCAGTTGCTTATATTCAAGCGACTCTTACCTTGGGAAGACCGACT
ATCCTTTAGTTAAGGCTGAGTACCCAAGCGTTCAGCTTGAGTGTATGTTG
ACGATAAAGATTGGATTAAGTGTGACTGGGCGGCTAGCTTGACACCCTTT
CAAAGAACTCTTATGACCAAAGCAGAATTTGCTGTTTATTTTATTGGCGG
CTGTATTGTTGCTGCTGCTGGTCTTGTTATTATTATAATCATCAA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig10:2644886..2646630+

>mRNA_H-akashiwo_Contig10.53.1 ID=mRNA_H-akashiwo_Contig10.53.1|Name=mRNA_H-akashiwo_Contig10.53.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=1305bp|location=Sequence derived from alignment at H-akashiwo_Contig10:2644886..2646630+ (Heterosigma akashiwo CCMP452)
ATGCGCGTGAGCCAAAGACAACTGGCCAACCAGGGCCAGCTCAATGGTTT
CCGTTCGTCCGCTGTGCAGTTCATCACAGTCAAGCCGGGTGAGACGGTGC
AGGTGACTATGGGTAGTCATGCATATGGTTTCGCCGTGGACCCGACTACA
CGCACCGCCCTCCTCAACGTGGGTGGTGTCAAGTGGGACTCTGGCTCTGA
CTCGGAGGGGCACACGGACAGTGTACAGCGTATAGATAGTAGTATGAATG
GCGTTACCTATCGTATCTGCATGGATGAGTCATGCCCGCCACTGACCCCA
GACGAGTTGACCTCTGCCAAGAGACTCGTGCAGTCAATGGTGGAGGGGGT
GTACGTAGAGGGTCCGCCCATAGGCCGACAGCTTGCCGCAAAGGCAGAAC
CTTCGTCGGTCTGGTGGCACATTGTAACCGATATTGGTCGTGATGGTACG
GACGATGAGATAGTCCGTCGTACAAAGGACATGATTAATGCCGGTATGAC
ACGAGATATGACGACACACTGGGGGCCACTCTACGATAAACATCCTAGAC
AAAAGACCGTACAACCTGGCGCCGCCACTGCTGCAGATGTAGTAGCAGGG
GGGGTGTACACTGTGGAGGTGTATCACAGAGCCTTGGACCGCTGCCCAGG
CGGGAACGAGAACAATCACATTGTCAAGCACAAGTACACCTCAAACTTGA
ACGGCCCGGGCGGGCGTGATCATCCACTGGCACTGGCAGCGTCTCTTACA
GCCCTGCATTGGTACGAGTTTGACGTGTCTATGTTTATCACACCTGAACC
AATCACACGAAATGCCACTGTGACAGAGCAGTTTGAGAGTGCTGTTGTTG
CGCCATTGATAGCGGCGTTCGAGGGCGATCCGGTCTATGGGCGTGATGTG
GTGTGTACAATCGATGATCCCCGTGAGGATTGTGAACAGGTTGACACGGA
ATGGAGTAGTATCGAGGTTATGTTGTTTGACTCCTCTGGTCAGTTGATAT
CACGTATACACCGCCGTGCTCGTCTAATTAATGATCGATATGTACCTATC
GCTATGATGCCCCCTGAGGCTCAGGCACCGCCCCCCGTGCAGGCAGTGTT
GGACGGAGTACAGTCAGTGCTGGGTGTTGGCACTGTAAAAGGGTGGTACG
ACAATGACGCCGACACTGCATTGGGTAACTACAAACTGCACCGGTGGGAT
TACCTCGGTAGTGTGACTCCCATTTACTTTGGCGACCCATTTGCCAAGAC
ACCTGCACGTGTTACCACTGGCACTGCCAGTGGCACCCCAGAAGACGAGA
CCTAG
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