mRNA_H-akashiwo_Contig10.51.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig10.51.1
Unique NamemRNA_H-akashiwo_Contig10.51.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig10.51.1 vs. uniprot
Match: A0A6T5NVZ3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5NVZ3_HETAK)

HSP 1 Score: 73.6 bits (179), Expect = 4.260e-13
Identity = 37/37 (100.00%), Postives = 37/37 (100.00%), Query Frame = 1 
Query:  214 RNRLLNFNFSLKKKKSSKKIRPAPSAELPANTARSLH 324
            RNRLLNFNFSLKKKKSSKKIRPAPSAELPANTARSLH
Sbjct:  150 RNRLLNFNFSLKKKKSSKKIRPAPSAELPANTARSLH 186
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig10.51.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6T5NVZ3_HETAK4.260e-13100.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig10contigH-akashiwo_Contig10:2627278..2627800 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size525
Hectar predicted targeting categoryother localisation
Exons1
Cds size327
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387042.3344681-CDS-H-akashiwo_Contig10:2627277..26276041681387042.3344681-CDS-H-akashiwo_Contig10:2627277..2627604Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig10 2627278..2627604 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387042.3458495-UTR-H-akashiwo_Contig10:2627604..26278001681387042.3458495-UTR-H-akashiwo_Contig10:2627604..2627800Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig10 2627605..2627800 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig10.51.1prot_H-akashiwo_Contig10.51.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig10 2627278..2627604 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig10.51.1

>prot_H-akashiwo_Contig10.51.1 ID=prot_H-akashiwo_Contig10.51.1|Name=mRNA_H-akashiwo_Contig10.51.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=109bp
EQVLDPQPAASSGRRSSLQRRLRGGTLSNGDCPLVVVEEEENSVSTSSLT
TAAGKPLEDSSSAAPNENTTRRNRLLNFNFSLKKKKSSKKIRPAPSAELP
ANTARSLH*
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mRNA from alignment at H-akashiwo_Contig10:2627278..2627800+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig10.51.1 ID=mRNA_H-akashiwo_Contig10.51.1|Name=mRNA_H-akashiwo_Contig10.51.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=523bp|location=Sequence derived from alignment at H-akashiwo_Contig10:2627278..2627800+ (Heterosigma akashiwo CCMP452)
GAGCAGGTCTTGGACCCGCAGCCGGCGGCCAGTTCGGGGCGCCGCTCGTC
GTTACAACGGCGGCTGAGAGGGGGGACGCTGAGTAATGGTGACTGCCCGC
TGGTGGTGGTGGAAGAAGAAGAAAACAGCGTGAGCACTTCGTCACTGACC
ACTGCTGCGGGAAAGCCTTTGGAAGACTCCTCCTCTGCTGCACCAAATGA
AAATACTACTCGGCGTAATAGGTTGTTGAACTTCAACTTTAGTCTCAAAA
AGAAGAAGTCTTCAAAGAAGATCCGGCCAGCACCTTCTGCTGAGCTGCCA
GCCAATACTGCTCGCAGTTTACACTGATGACGATGAAAAAATAAACAAAC
ATATGATAGTGCTACTGGCTGTTGTGTACTGTTTTCCTTTCTTTTCTTCC
TTTTTTTGGTTCTATCTACTTTTTTTACATTTTTTCTCCTCTTCTTCTTC
CCTTCTTCTTGTACCTACCTATACTACTACTACTAACACAACAACAATAT
GAAGAAGTAACGTTCTGGTCTAT
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Coding sequence (CDS) from alignment at H-akashiwo_Contig10:2627278..2627800+

>mRNA_H-akashiwo_Contig10.51.1 ID=mRNA_H-akashiwo_Contig10.51.1|Name=mRNA_H-akashiwo_Contig10.51.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=327bp|location=Sequence derived from alignment at H-akashiwo_Contig10:2627278..2627800+ (Heterosigma akashiwo CCMP452)
GAGCAGGTCTTGGACCCGCAGCCGGCGGCCAGTTCGGGGCGCCGCTCGTC
GTTACAACGGCGGCTGAGAGGGGGGACGCTGAGTAATGGTGACTGCCCGC
TGGTGGTGGTGGAAGAAGAAGAAAACAGCGTGAGCACTTCGTCACTGACC
ACTGCTGCGGGAAAGCCTTTGGAAGACTCCTCCTCTGCTGCACCAAATGA
AAATACTACTCGGCGTAATAGGTTGTTGAACTTCAACTTTAGTCTCAAAA
AGAAGAAGTCTTCAAAGAAGATCCGGCCAGCACCTTCTGCTGAGCTGCCA
GCCAATACTGCTCGCAGTTTACACTGA
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