mRNA_H-akashiwo_Contig10.50.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig10.50.1
Unique NamemRNA_H-akashiwo_Contig10.50.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig10.50.1 vs. uniprot
Match: A0A7S3YM06_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YM06_HETAK)

HSP 1 Score: 191 bits (486), Expect = 7.710e-58
Identity = 96/151 (63.58%), Postives = 114/151 (75.50%), Query Frame = 1
Query:    1 AYFMMDLQRGGDLFMVLRNNELSYNGARFYATEVLVALQYLHSLGIIYRDLKPENILVDDFGHVKIADFGLSRIMDDASELATTCCGTAAYTPPEMLTQT--GYGHSVDYWQYGCFVYELFMGQSPFYLPNAPSSE-AKRRILAAEYEFPE 444
             Y  M+L RGGDLF +L+N+ +++NGARFYA EVL AL+YLHSL I+YRDLKPENILV   GHV+IADFGLSR +D   + ATT CGTAAY  PEML Q   GY  SVDYWQ+GCFV+ELF+G SPFY P+ PS E  K  I   E+EFP+
Sbjct:   43 VYLAMELMRGGDLFTLLQNHAITFNGARFYAAEVLEALKYLHSLNILYRDLKPENILVTHDGHVRIADFGLSRFVD-GKDTATTLCGTAAYFAPEMLCQNKGGYSLSVDYWQFGCFVFELFVGSSPFYDPDDPSEENMKANISRGEFEFPQ 192          
BLAST of mRNA_H-akashiwo_Contig10.50.1 vs. uniprot
Match: A0A7S3XJV9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XJV9_HETAK)

HSP 1 Score: 155 bits (391), Expect = 2.480e-46
Identity = 68/81 (83.95%), Postives = 76/81 (93.83%), Query Frame = 1
Query:  202 DFGLSRIMDDASELATTCCGTAAYTPPEMLTQTGYGHSVDYWQYGCFVYELFMGQSPFYLPNAPSSEAKRRILAAEYEFPE 444
            DFGLSRI+D+ +ELATTCCGTAAYTPPEMLT+ GYG+S DYWQYGCFVYELFMGQSPFYLPN PSSE KRRI+AAE++FPE
Sbjct:    1 DFGLSRIIDEGAELATTCCGTAAYTPPEMLTKKGYGYSADYWQYGCFVYELFMGQSPFYLPNEPSSEVKRRIMAAEFDFPE 81          
BLAST of mRNA_H-akashiwo_Contig10.50.1 vs. uniprot
Match: A0A6V1PKK5_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1PKK5_HETAK)

HSP 1 Score: 162 bits (410), Expect = 3.840e-45
Identity = 78/148 (52.70%), Postives = 98/148 (66.22%), Query Frame = 1
Query:    1 AYFMMDLQRGGDLFMVLRNNELSYNGARFYATEVLVALQYLHSLGIIYRDLKPENILVDDFGHVKIADFGLSRIMDDASELATTCCGTAAYTPPEMLTQTGYGHSVDYWQYGCFVYELFMGQSPFYLPNAPSSEAKRRILAAEYEFPE 444
             YF+M+   GGDLF  L    L+  G  F++TE+L+ALQ+LHS  IIYRDLKPENIL+D  GHVK+AD GL++++      AT C GT  Y  PE L   GYG S D+WQ+GCFV+EL+ G SPFY+      E +  IL  EYEFPE
Sbjct:  197 VYFIMEFCPGGDLFTALMQYPLTAEGVIFFSTEILLALQFLHSKYIIYRDLKPENILLDAEGHVKLADLGLAKVLGRGGRTATLC-GTEVYVAPETLAGQGYGLSADFWQFGCFVFELYTGHSPFYVKGRGKEENREAILHGEYEFPE 343          
BLAST of mRNA_H-akashiwo_Contig10.50.1 vs. uniprot
Match: A0A835Z095_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z095_9STRA)

HSP 1 Score: 159 bits (402), Expect = 2.940e-43
Identity = 73/147 (49.66%), Postives = 101/147 (68.71%), Query Frame = 1
Query:    4 YFMMDLQRGGDLFMVLRNNELSYNG-ARFYATEVLVALQYLHSLGIIYRDLKPENILVDDFGHVKIADFGLSRIMDDASELATTCCGTAAYTPPEMLTQTGYGHSVDYWQYGCFVYELFMGQSPFYLPNAPSSEAKRRILAAEYEFP 441
            Y+ +D   GGDLF   R +    N  A FYA EVL+AL++LH+  +IYRDLKPEN+L+DD GHVK+AD GL++++ D S   T+ CGT AY  PEM+ +  Y +SVD+WQYGCF++EL+ G+SPF+LP  P    +  IL   + +P
Sbjct:  309 YYALDFMNGGDLFRHWRRHRDRRNDMAPFYAAEVLLALEHLHAHNVIYRDLKPENVLLDDVGHVKLADLGLAKMLRDKSGRTTSFCGTEAYLAPEMVLRIPYAYSVDFWQYGCFLFELYAGRSPFWLPRKPRKVIRDNILNGSFAYP 455          
BLAST of mRNA_H-akashiwo_Contig10.50.1 vs. uniprot
Match: A0A7S2V5N7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5N7_9STRA)

HSP 1 Score: 150 bits (379), Expect = 1.380e-42
Identity = 69/146 (47.26%), Postives = 91/146 (62.33%), Query Frame = 1
Query:    4 YFMMDLQRGGDLFMVLRNNELSYNGARFYATEVLVALQYLHSLGIIYRDLKPENILVDDFGHVKIADFGLSRIMDDASELATTCCGTAAYTPPEMLTQTGYGHSVDYWQYGCFVYELFMGQSPFYLPNAPSSEAKRRILAAEYEFP 441
            Y +MD   GGD F +LRN +L       YA EVL+AL++LH   IIYRDLKPEN+L+   GH+K+AD GLS+I+D       T CGT +Y PPEM+    Y  SVD WQ+GC+++ELF G+SPF+ P          I+  +Y  P
Sbjct:    5 YLVMDFMPGGDFFTLLRNKQLPNATLMIYAAEVLLALEHLHKHNIIYRDLKPENVLLGATGHLKLADMGLSKILDSHDGQTATLCGTDSYLPPEMILDKRYSVSVDLWQFGCYIFELFAGRSPFWKPRHQRQNLHSEIIRGQYNTP 150          
BLAST of mRNA_H-akashiwo_Contig10.50.1 vs. uniprot
Match: A0A7S2V3Y1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V3Y1_9STRA)

HSP 1 Score: 150 bits (379), Expect = 3.030e-42
Identity = 72/148 (48.65%), Postives = 97/148 (65.54%), Query Frame = 1
Query:    4 YFMMDLQRGGDLFMVL-RNNELSYNGARFYATEVLVALQYLHSLGIIYRDLKPENILVDDFGHVKIADFGLSRIMDDASELATTCCGTAAYTPPEMLTQTGYGHSVDYWQYGCFVYELFMGQSPFYLPNAPSSEAKRRILAAEYEFPE 444
            Y  M+   GGDLF  L +N  +S   A  YA EVL+AL++LH+  II+RDLKPENILV   GH+K+AD GL++++D+     +T CGT +Y  PEML +  YG SVD+W +GCF+YEL +G SPF+ P       +R ILA  +  PE
Sbjct:   24 YLAMEFLPGGDLFTYLNKNRRISKRVAMIYAAEVLLALEHLHANDIIHRDLKPENILVGRTGHLKLADLGLAKVLDNERNETSTLCGTLSYIAPEMLKRLPYGKSVDFWMFGCFLYELHVGTSPFWRPRGRRQNVRRNILAGRFHKPE 171          
BLAST of mRNA_H-akashiwo_Contig10.50.1 vs. uniprot
Match: A0A6V1QBG3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1QBG3_HETAK)

HSP 1 Score: 151 bits (381), Expect = 8.230e-41
Identity = 74/147 (50.34%), Postives = 93/147 (63.27%), Query Frame = 1
Query:    4 YFMMDLQRGGDLFMVLRNNELSYNGARFYATEVLVALQYLHSLGIIYRDLKPENILVDDFGHVKIADFGLSRIMDDASELATTCCGTAAYTPPEMLTQTGYGHSVDYWQYGCFVYELFMGQSPFYLPNAPSSEAKRRILAAEYEFPE 444
            YF+M+   GGDLF  L    L+  G  FY+ E+L+ALQ+LHS  IIYRDLKPENIL+D  GHVK+AD GL++++       +T CGT  Y  PE L    YG S D+WQ+GCFV+EL+ G SPFY       E +  ILA  Y  PE
Sbjct:  206 YFIMEFCPGGDLFTALMQYPLTAEGVVFYSAEILLALQFLHSKYIIYRDLKPENILLDAEGHVKLADLGLAKVLGRGGR-TSTLCGTEVYVAPETLGGNEYGLSADFWQFGCFVFELYTGHSPFYAKGRGKEENRAAILAGRYASPE 351          
BLAST of mRNA_H-akashiwo_Contig10.50.1 vs. uniprot
Match: A0A7S2V4N7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4N7_9STRA)

HSP 1 Score: 149 bits (376), Expect = 1.190e-40
Identity = 68/146 (46.58%), Postives = 96/146 (65.75%), Query Frame = 1
Query:    4 YFMMDLQRGGDLFMVLRNNELSYNGARFYATEVLVALQYLHSLGIIYRDLKPENILVDDFGHVKIADFGLSRIMDDASELATTCCGTAAYTPPEMLTQTGYGHSVDYWQYGCFVYELFMGQSPFYLPNAPSSEAKRRILAAEYEFP 441
            Y + D  +GGDLF  L NN +S + A  Y+ EVL+AL++LHS  +IYRDLKPEN+LV   GH+K+AD GL++ +   S +  T CGT +Y  PE++   G+G SVD+WQ+GCF++EL+ G+SPF+ P        R I   E+  P
Sbjct:  150 YLVSDFMQGGDLFTYLSNNRISLHTAIVYSAEVLLALEHLHSHDVIYRDLKPENVLVGPAGHLKLADMGLAKKLSSHSAITNTFCGTDSYLAPEVIRHKGHGKSVDFWQFGCFLFELYTGKSPFWKPKHERGGLYRCITRGEFFMP 295          
BLAST of mRNA_H-akashiwo_Contig10.50.1 vs. uniprot
Match: D7G915_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G915_ECTSI)

HSP 1 Score: 151 bits (382), Expect = 1.430e-40
Identity = 69/147 (46.94%), Postives = 98/147 (66.67%), Query Frame = 1
Query:    4 YFMMDLQRGGDLFMVLRNNELSYNG-ARFYATEVLVALQYLHSLGIIYRDLKPENILVDDFGHVKIADFGLSRIMDDASELATTCCGTAAYTPPEMLTQTGYGHSVDYWQYGCFVYELFMGQSPFYLPNAPSSEAKRRILAAEYEFP 441
            Y+ +D   GGDLF   R +       A FYA+EVL+AL++LH   +IYRDLKPEN+L+D  GH+++AD GL++++    +  ++ CGT AY  PEM+ +  YG SVD+WQYGCFVYEL+ G+SPF+LP  P    +  IL   + +P
Sbjct:  269 YYALDFMNGGDLFRHWRKHRNRRTEMAPFYASEVLLALEHLHKHCVIYRDLKPENVLLDSQGHIRLADLGLAKVLKSKVDRTSSFCGTEAYLAPEMILRLPYGSSVDFWQYGCFVYELYAGRSPFWLPRKPRKFIRENILNGVFAYP 415          
BLAST of mRNA_H-akashiwo_Contig10.50.1 vs. uniprot
Match: A0A7S2UV11_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UV11_9STRA)

HSP 1 Score: 143 bits (360), Expect = 9.950e-40
Identity = 68/146 (46.58%), Postives = 95/146 (65.07%), Query Frame = 1
Query:    4 YFMMDLQRGGDLFMVLRNNELSYNGARFYATEVLVALQYLHSLGIIYRDLKPENILVDDFGHVKIADFGLSRIMDDASELATTCCGTAAYTPPEMLTQTGYGHSVDYWQYGCFVYELFMGQSPFYLPNAPSSEAKRRILAAEYEFP 441
            YF+MD   GGDLF  ++  + +   A   A EV++AL++LH   IIYRDLKPENIL+D+ GHVK+AD GL++++ D  E   T CGT +Y  PE++ +  Y  SVD+WQYGCFV+EL+ G+SPF+ P          I +  Y+ P
Sbjct:    3 YFVMDFAPGGDLFTKMKRKKPTREEAVQIAAEVMLALEHLHLHNIIYRDLKPENILIDEAGHVKVADMGLAKVLKDG-ERTMTFCGTESYIAPEIIHRKPYSKSVDFWQYGCFVFELYCGRSPFWRPRHLRQNLHETITSGVYKSP 147          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig10.50.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3YM06_HETAK7.710e-5863.58Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S3XJV9_HETAK2.480e-4683.95Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A6V1PKK5_HETAK3.840e-4552.70Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A835Z095_9STRA2.940e-4349.66Kinase-like domain-containing protein n=1 Tax=Trib... [more]
A0A7S2V5N7_9STRA1.380e-4247.26Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2V3Y1_9STRA3.030e-4248.65Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6V1QBG3_HETAK8.230e-4150.34Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2V4N7_9STRA1.190e-4046.58Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
D7G915_ECTSI1.430e-4046.94Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2UV11_9STRA9.950e-4046.58Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig10contigH-akashiwo_Contig10:2625886..2626483 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G915
PFAMsPkinase
Model size444
Max annot lvl2759|Eukaryota
KEGG koko:K13303
KEGG Pathwayko04068,ko04151,map04068,map04151
Hectar predicted targeting categoryother localisation
Exons2
Evalue4.11e-40
EggNOG OGsKOG0598@1|root,KOG0598@2759|Eukaryota
EC2.7.11.1
Descriptionprotein serine/threonine kinase activity
Cds size435
COG categoryH
BRITEko00000,ko00001,ko01000,ko01001
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387043.336189-UTR-H-akashiwo_Contig10:2625885..26258941681387043.336189-UTR-H-akashiwo_Contig10:2625885..2625894Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig10 2625886..2625894 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387043.3507743-CDS-H-akashiwo_Contig10:2625894..26262201681387043.3507743-CDS-H-akashiwo_Contig10:2625894..2626220Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig10 2625895..2626220 +
1681387043.3600495-CDS-H-akashiwo_Contig10:2626374..26264831681387043.3600495-CDS-H-akashiwo_Contig10:2626374..2626483Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig10 2626375..2626483 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig10.50.1prot_H-akashiwo_Contig10.50.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig10 2625895..2626483 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig10.50.1

>prot_H-akashiwo_Contig10.50.1 ID=prot_H-akashiwo_Contig10.50.1|Name=mRNA_H-akashiwo_Contig10.50.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=145bp
MMDLQRGGDLFMVLRNNELSYNGARFYATEVLVALQYLHSLGIIYRDLKP
ENILVDDFGHVKIADFGLSRIMDDASELATTCCGTAAYTPPEMLTQTGYG
HSVDYWQYGCFVYELFMGQSPFYLPNAPSSEAKRRILAAEYEFPE
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mRNA from alignment at H-akashiwo_Contig10:2625886..2626483+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig10.50.1 ID=mRNA_H-akashiwo_Contig10.50.1|Name=mRNA_H-akashiwo_Contig10.50.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=598bp|location=Sequence derived from alignment at H-akashiwo_Contig10:2625886..2626483+ (Heterosigma akashiwo CCMP452)
GCGTATTTCATGATGGACCTACAGCGGGGGGGGGACCTGTTCATGGTTCT ACGAAATAATGAGCTAAGTTACAACGGCGCAAGATTCTACGCTACAGAAG TGTTGGTTGCCCTTCAGTATCTACATTCGTTGGGAATCATTTACCGCGAC CTGAAACCAGAGAATATTCTCGTGGATGATTTTGGGCATGTCAAAATAGC GGACTTCGGCTTGAGTCGCATAATGGACGACGCCTCTGAGCTTGCGACGA CCTGCTGCGGCACAGCCGCCTACACGCCTCCAGAGATGCTTACGCAGACT GGGTACGGCCACTCTGTTGATTACTGGCAGTACGGGTAAGGAACAAATTC TTTTTTTTTTCTTTTCCTAAATTTTGGGGCGGAGGGGGGGTGTCTAATTT AAAACAAGCATGTAACAATGACAGTAGAACAACCCCGTCATAAAGCTTTG TTTTGCTGCCCTTCCTGATACTACACCAAAAATGAACAGGTGCTTTGTTT ACGAGCTGTTCATGGGTCAAAGCCCCTTTTACTTGCCGAACGCGCCTTCC TCGGAGGCGAAGCGGCGCATCCTGGCTGCCGAGTACGAGTTCCCTGAG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig10:2625886..2626483+

>mRNA_H-akashiwo_Contig10.50.1 ID=mRNA_H-akashiwo_Contig10.50.1|Name=mRNA_H-akashiwo_Contig10.50.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=435bp|location=Sequence derived from alignment at H-akashiwo_Contig10:2625886..2626483+ (Heterosigma akashiwo CCMP452)
ATGATGGACCTACAGCGGGGGGGGGACCTGTTCATGGTTCTACGAAATAA
TGAGCTAAGTTACAACGGCGCAAGATTCTACGCTACAGAAGTGTTGGTTG
CCCTTCAGTATCTACATTCGTTGGGAATCATTTACCGCGACCTGAAACCA
GAGAATATTCTCGTGGATGATTTTGGGCATGTCAAAATAGCGGACTTCGG
CTTGAGTCGCATAATGGACGACGCCTCTGAGCTTGCGACGACCTGCTGCG
GCACAGCCGCCTACACGCCTCCAGAGATGCTTACGCAGACTGGGTACGGC
CACTCTGTTGATTACTGGCAGTACGGGTGCTTTGTTTACGAGCTGTTCAT
GGGTCAAAGCCCCTTTTACTTGCCGAACGCGCCTTCCTCGGAGGCGAAGC
GGCGCATCCTGGCTGCCGAGTACGAGTTCCCTGAG
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