mRNA_H-akashiwo_Contig10.45.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig10.45.1
Unique NamemRNA_H-akashiwo_Contig10.45.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig10.45.1 vs. uniprot
Match: A0A383WPW9_TETOB (RING-type domain-containing protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383WPW9_TETOB)

HSP 1 Score: 61.6 bits (148), Expect = 1.280e-8
Identity = 22/44 (50.00%), Postives = 32/44 (72.73%), Query Frame = 1
Query:   94 TVLVRRLPCQHYFHPSCIEEWLLTQANCPLCKQEVFAPGEAGTA 225
            ++ V++LPC+HY+HP CI+ WL+    CPLCK  V+AP +A  A
Sbjct:  196 SIEVKQLPCKHYYHPDCIDAWLVRDNTCPLCKSLVWAPNDAAAA 239          
BLAST of mRNA_H-akashiwo_Contig10.45.1 vs. uniprot
Match: A0A433PEZ9_9FUNG (RING-type domain-containing protein (Fragment) n=1 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433PEZ9_9FUNG)

HSP 1 Score: 61.2 bits (147), Expect = 2.290e-8
Identity = 24/62 (38.71%), Postives = 37/62 (59.68%), Query Frame = 1
Query:   22 DVSKTQVVPVVEDGAVQQVAAGESTVLVRRLPCQHYFHPSCIEEWLLTQANCPLCKQEVFAP 207
            D S+  +   +++     +   E T  +R LPC HYFH +CI++WLLT  +CPLCK ++  P
Sbjct:  217 DESRLDIEDEIDESCAICLGDYEPTEWIRILPCTHYFHKNCIDQWLLTDKSCPLCKHDIDQP 278          
BLAST of mRNA_H-akashiwo_Contig10.45.1 vs. uniprot
Match: A0A812Z0E0_9DINO (Rnf38 protein n=1 Tax=Symbiodinium necroappetens TaxID=1628268 RepID=A0A812Z0E0_9DINO)

HSP 1 Score: 59.7 bits (143), Expect = 7.700e-8
Identity = 26/43 (60.47%), Postives = 28/43 (65.12%), Query Frame = 1
Query:  100 LVRRLPCQHYFHPSCIEEWLLTQANCPLCKQEVFAPGEAGTAR 228
            LVRRLPC H FH SCI+ WL     CPLC +EV AP E   AR
Sbjct:  309 LVRRLPCNHVFHQSCIDRWLRRNQVCPLCLREVKAPSENSLAR 351          
BLAST of mRNA_H-akashiwo_Contig10.45.1 vs. uniprot
Match: A0A1Q9ERH3_SYMMI (E3 ubiquitin-protein ligase RNF38 n=3 Tax=Symbiodinium TaxID=2949 RepID=A0A1Q9ERH3_SYMMI)

HSP 1 Score: 59.7 bits (143), Expect = 8.610e-8
Identity = 26/43 (60.47%), Postives = 28/43 (65.12%), Query Frame = 1
Query:  100 LVRRLPCQHYFHPSCIEEWLLTQANCPLCKQEVFAPGEAGTAR 228
            LVRRLPC H FH SCI+ WL     CPLC +EV AP E   AR
Sbjct:  309 LVRRLPCNHVFHQSCIDRWLRRNQVCPLCLREVKAPSENSLAR 351          
BLAST of mRNA_H-akashiwo_Contig10.45.1 vs. uniprot
Match: A0A383VKF5_TETOB (RING-type domain-containing protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VKF5_TETOB)

HSP 1 Score: 58.5 bits (140), Expect = 2.080e-7
Identity = 20/36 (55.56%), Postives = 27/36 (75.00%), Query Frame = 1
Query:  100 LVRRLPCQHYFHPSCIEEWLLTQANCPLCKQEVFAP 207
            L+++LPCQHY+H  CI++WL    NCPLCK  V+ P
Sbjct:  344 LLKQLPCQHYYHAQCIDQWLTRSGNCPLCKAAVWQP 379          
BLAST of mRNA_H-akashiwo_Contig10.45.1 vs. uniprot
Match: A0A7S2SC38_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SC38_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 2.710e-7
Identity = 28/72 (38.89%), Postives = 42/72 (58.33%), Query Frame = 1
Query:   88 ESTVLVRRLPCQHYFHPSCIEEWLLTQANCPLCKQEVFAP-GEAGTARDGQRESQQGLLEEGEPVRPSAASS 300
            E  + VR LPC+H+FHP C++EWL   + CP C+ ++ +P GE G      R S  G   +G  + P+A+ S
Sbjct:  277 EKDMEVRVLPCKHFFHPQCVDEWLRLNSTCPSCRLDITSPPGEQG------RRSDSGADRDGIELAPTASQS 342          
BLAST of mRNA_H-akashiwo_Contig10.45.1 vs. uniprot
Match: A0A0D9P6F8_METAN (RING-type domain-containing protein n=5 Tax=Metarhizium TaxID=5529 RepID=A0A0D9P6F8_METAN)

HSP 1 Score: 56.6 bits (135), Expect = 2.890e-7
Identity = 23/35 (65.71%), Postives = 26/35 (74.29%), Query Frame = 1
Query:  100 LVRRLPCQHYFHPSCIEEWLLTQAN-CPLCKQEVF 201
            +VRRLPCQHYFH SC++ W L Q N CPLCK   F
Sbjct:  116 MVRRLPCQHYFHSSCLDTWYLRQHNTCPLCKTPFF 150          
BLAST of mRNA_H-akashiwo_Contig10.45.1 vs. uniprot
Match: A0A7S0QVM1_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0QVM1_9CHLO)

HSP 1 Score: 55.1 bits (131), Expect = 4.180e-7
Identity = 27/74 (36.49%), Postives = 43/74 (58.11%), Query Frame = 1
Query:   10 PSRSDVSKTQVVPVVE-DGAVQQVAAGESTVL----------VRRLPCQHYFHPSCIEEWLLTQANCPLCKQEV 198
            P R   S+ + +PVVE +GA +     E   +          +RRLPC+H+FH +CI+EWL  ++ CP+CK ++
Sbjct:   41 PHRLTPSEVKAIPVVEYEGAEEGEEGAELCTICLDDFAKGDQLRRLPCRHHFHVTCIDEWLGRRSMCPVCKHDL 114          
BLAST of mRNA_H-akashiwo_Contig10.45.1 vs. uniprot
Match: A0A482RN29_9ARCH (RING-type domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RN29_9ARCH)

HSP 1 Score: 55.1 bits (131), Expect = 5.410e-7
Identity = 24/41 (58.54%), Postives = 30/41 (73.17%), Query Frame = 1
Query:   82 AGESTVLVRRLPCQHYFHPSCIEEWLLTQANCPLCKQEVFA 204
            AGE   LVR LPC H+FH +CI++WL  +A CPLCK +V A
Sbjct:   85 AGE---LVRPLPCCHFFHAACIDQWLAERAVCPLCKVDVLA 122          
BLAST of mRNA_H-akashiwo_Contig10.45.1 vs. uniprot
Match: A0A179G9M8_METCM (Ring finger domain-containing protein n=1 Tax=Pochonia chlamydosporia 170 TaxID=1380566 RepID=A0A179G9M8_METCM)

HSP 1 Score: 54.3 bits (129), Expect = 6.390e-7
Identity = 21/35 (60.00%), Postives = 25/35 (71.43%), Query Frame = 1
Query:  100 LVRRLPCQHYFHPSCIEEWLLTQ-ANCPLCKQEVF 201
            +VR LPCQHYFH SC++ W L Q   CPLCK  +F
Sbjct:   51 MVRHLPCQHYFHSSCLDTWYLRQHQTCPLCKTPIF 85          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig10.45.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A383WPW9_TETOB1.280e-850.00RING-type domain-containing protein n=1 Tax=Tetrad... [more]
A0A433PEZ9_9FUNG2.290e-838.71RING-type domain-containing protein (Fragment) n=1... [more]
A0A812Z0E0_9DINO7.700e-860.47Rnf38 protein n=1 Tax=Symbiodinium necroappetens T... [more]
A0A1Q9ERH3_SYMMI8.610e-860.47E3 ubiquitin-protein ligase RNF38 n=3 Tax=Symbiodi... [more]
A0A383VKF5_TETOB2.080e-755.56RING-type domain-containing protein n=1 Tax=Tetrad... [more]
A0A7S2SC38_9STRA2.710e-738.89Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A0D9P6F8_METAN2.890e-765.71RING-type domain-containing protein n=5 Tax=Metarh... [more]
A0A7S0QVM1_9CHLO4.180e-736.49Hypothetical protein (Fragment) n=1 Tax=Pyramimona... [more]
A0A482RN29_9ARCH5.410e-758.54RING-type domain-containing protein n=1 Tax=archae... [more]
A0A179G9M8_METCM6.390e-760.00Ring finger domain-containing protein n=1 Tax=Poch... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig10contigH-akashiwo_Contig10:2201785..2202180 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog42099.EPrPV00000021679
PFAMszf-RING_2
Model size398
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.44e-10
EggNOG OGsKOG0800@1|root,KOG0800@2759|Eukaryota,1MABA@121069|Pythiales
DescriptionTransmembrane protein. Source PGD
Cds size393
COG categoryO
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387043.2920258-CDS-H-akashiwo_Contig10:2201784..22021771681387043.2920258-CDS-H-akashiwo_Contig10:2201784..2202177Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig10 2201785..2202177 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387043.3016734-UTR-H-akashiwo_Contig10:2202177..22021801681387043.3016734-UTR-H-akashiwo_Contig10:2202177..2202180Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig10 2202178..2202180 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig10.45.1prot_H-akashiwo_Contig10.45.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig10 2201785..2202177 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig10.45.1

>prot_H-akashiwo_Contig10.45.1 ID=prot_H-akashiwo_Contig10.45.1|Name=mRNA_H-akashiwo_Contig10.45.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=131bp
RSSPSRSDVSKTQVVPVVEDGAVQQVAAGESTVLVRRLPCQHYFHPSCIE
EWLLTQANCPLCKQEVFAPGEAGTARDGQRESQQGLLEEGEPVRPSAASS
SVNTEEEHMEGGQLLTRTSRVTSSGVGRPI*
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mRNA from alignment at H-akashiwo_Contig10:2201785..2202180+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig10.45.1 ID=mRNA_H-akashiwo_Contig10.45.1|Name=mRNA_H-akashiwo_Contig10.45.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=396bp|location=Sequence derived from alignment at H-akashiwo_Contig10:2201785..2202180+ (Heterosigma akashiwo CCMP452)
CGATCTTCGCCAAGTCGCTCTGATGTAAGCAAGACCCAGGTGGTCCCAGT TGTTGAGGATGGCGCTGTGCAACAAGTTGCAGCGGGAGAGTCCACAGTGC TTGTGCGCCGTCTGCCTTGCCAACACTACTTCCACCCTTCCTGCATCGAG GAGTGGTTACTAACACAGGCAAATTGCCCACTGTGCAAACAAGAAGTCTT TGCACCTGGAGAAGCTGGAACTGCGAGGGATGGGCAGCGAGAATCGCAGC AAGGACTGCTGGAAGAAGGGGAACCGGTCCGACCTTCAGCAGCATCATCA TCCGTGAACACTGAGGAGGAACACATGGAAGGGGGCCAGCTGTTAACGAG AACATCCAGAGTCACTTCTTCTGGTGTTGGCAGGCCAATATGATAG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig10:2201785..2202180+

>mRNA_H-akashiwo_Contig10.45.1 ID=mRNA_H-akashiwo_Contig10.45.1|Name=mRNA_H-akashiwo_Contig10.45.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=393bp|location=Sequence derived from alignment at H-akashiwo_Contig10:2201785..2202180+ (Heterosigma akashiwo CCMP452)
CGATCTTCGCCAAGTCGCTCTGATGTAAGCAAGACCCAGGTGGTCCCAGT
TGTTGAGGATGGCGCTGTGCAACAAGTTGCAGCGGGAGAGTCCACAGTGC
TTGTGCGCCGTCTGCCTTGCCAACACTACTTCCACCCTTCCTGCATCGAG
GAGTGGTTACTAACACAGGCAAATTGCCCACTGTGCAAACAAGAAGTCTT
TGCACCTGGAGAAGCTGGAACTGCGAGGGATGGGCAGCGAGAATCGCAGC
AAGGACTGCTGGAAGAAGGGGAACCGGTCCGACCTTCAGCAGCATCATCA
TCCGTGAACACTGAGGAGGAACACATGGAAGGGGGCCAGCTGTTAACGAG
AACATCCAGAGTCACTTCTTCTGGTGTTGGCAGGCCAATATGA
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