mRNA_H-akashiwo_Contig10.139.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig10.139.1
Unique NamemRNA_H-akashiwo_Contig10.139.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig10.139.1 vs. uniprot
Match: A0A7S4D8L8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D8L8_HETAK)

HSP 1 Score: 97.4 bits (241), Expect = 1.030e-24
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 2 
Query:    2 LDTALRVAAVPDPAAFLAAVRARNQGYARCNAYENLIEHGEMLQMFSSG 148
            LDTALRVAAVPDPAAFLAAVRARNQGYARCNAYENLIEHGEMLQMFSSG
Sbjct:   88 LDTALRVAAVPDPAAFLAAVRARNQGYARCNAYENLIEHGEMLQMFSSG 136
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig10.139.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S4D8L8_HETAK1.030e-24100.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig10contigH-akashiwo_Contig10:6207789..6213731 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size169
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size156
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387042.2368197-CDS-H-akashiwo_Contig10:6207788..62078751681387042.2368197-CDS-H-akashiwo_Contig10:6207788..6207875Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig10 6207789..6207875 +
1681387042.2450507-CDS-H-akashiwo_Contig10:6213651..62137201681387042.2450507-CDS-H-akashiwo_Contig10:6213651..6213720Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig10 6213652..6213720 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387042.2653148-UTR-H-akashiwo_Contig10:6213720..62137311681387042.2653148-UTR-H-akashiwo_Contig10:6213720..6213731Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig10 6213721..6213731 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig10.139.1prot_H-akashiwo_Contig10.139.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig10 6207789..6213720 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig10.139.1

>prot_H-akashiwo_Contig10.139.1 ID=prot_H-akashiwo_Contig10.139.1|Name=mRNA_H-akashiwo_Contig10.139.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=52bp
VGHGAAGRGGAGPGGLPRGRPRPEPRVRPVQCVREFDRTWRDATDVFIRI
K*
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mRNA from alignment at H-akashiwo_Contig10:6207789..6213731+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig10.139.1 ID=mRNA_H-akashiwo_Contig10.139.1|Name=mRNA_H-akashiwo_Contig10.139.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=5943bp|location=Sequence derived from alignment at H-akashiwo_Contig10:6207789..6213731+ (Heterosigma akashiwo CCMP452)
GTTGGACACGGCGCTGCGGGTCGCGGCGGTGCCGGACCCGGCGGCCTTCC
TCGCGGCCGTCCGCGCCCGGAACCAAGGGTACGCCCGGTAAGCGGCGACG
GTCCTTGGCCGCGCCCGTGGGGCACACAACACACACGCGCGCACGCTGGC
CGATCGCCAATATATACCTCGCCCTCCACACGGGCATACATTGTTTACTT
GACCAGCTGTTTAGGGGGTGCCAAAAAACTCATTTGTTTCTCAAATCAAC
GGCAATCGTAGTTGGTGCGACCCCTGATTTTGTTCGGCGACGAGGAAAAC
ATCGTCCTGATGCTAGGTATTTCTCATCGCAGAAATGTGCACCATTGAGC
TGATTTTACAGCGTGCAAGCTAATGTCCACTTGGTAATAGACCGGCTTGC
TGCCCAGCGATGTATACATCTTGTCACTTGTTACATTGCTTCCCAGCAAA
AGAGTTGTGTCATTCGACCTTTGCACGGTAAATCCACATTCCAAACATTC
AGCACTATCATTTGATCAAAAAGAACAACATATCTCAATTTGGTGAGCTT
CCGTCGAATTTTTATTTTTCTTATCTACGTTTGTACCATGCAATGTGCCC
CTCTCACTTCCTGAGCCACAACCAATGTCTTCTTGCACGTGCCATGGCTT
CTGAGTGGGTATGAGACGTCCAAATATACGTCCGATGCCTTAAGTGGTGG
TAAGTGGGGCGAGGTGGTGGTGGAGTGGTGGTGGCGCTGCTGCCGTTCCC
GTTCTGCAAGTGGTGGTGGTGGTGGTGGTGCAGAACAAGAAGCAGATTTT
TTATTTTTTTGCAAAAAAATGACTGTTATTCTGAGTGTTCATTCATGGAT
ATATGGAAATACACTTACATGTATGTTGCTGCCCTGTATACGAGCTGGCA
GTTGACCAAAAGCAAAGCTGATGTACCGCCTAAACAAAACTTTACGACTT
TTGTTCACCACATACAAGGCTGATGTTCACCTCTTTTTTTTTTGTCTAGA
CGAAAATCCAGAGGTCGCACCACAACAACCACCGTTGTTGATTTAAAGCA
AAATGTACAAAAATAAACAAATTTGTATACAATGTATGATCTCGCATCCG
GACACGCTCCTCGGAGCGATGAAGATAAACGTCTGGGGTGGCGAGGAATA
CTATTCCGTCAGTCTGGAACAAGAAGAGGAAAACTTGGGTGGTAAGGGTC
GGGCGATGAGGGCAAGTAAGAGAAGGGCGCGAATCTCGTGATGCATTGTG
TTTTCCAATGGGTGTATGAAGGTGGCTTCACACACAAGTCAAAGGGCAGC
CTCACTGGAAGAAGGCATGGGCCAGGCAAGAGCCTGGCCCTCCAGGCACA
AAGGGCCTTGGAAGAGAGAGATGAAGTTTTTATAGTTTTATTTGATTATT
CAGTGGGAGTGATGAGAAGGGTGAAACAGGTATGAGCGCACAGCGCGTGG
TGGTGGCAACAAAGTTGTTGTTGCCAGGTTAGACATGAACAGCTGTCATT
TGGATGGTTGATGGTTGTTGTACGTCAGTCCACATCATCAGTCATCATTT
GTAATTAGAAGCGTGCGGGTTTTCCAAACCAAACCAAATGCTGAGTTGCT
GTGGTTGAGGACGATGCCAACACCCAACGCCCCACCACAGCGAACATATG
AGCACAGCAACACAGCAGTAGAGAAAAGGATCCCCACCACTGTGCAAAAA
GTGTCAGCTGAGGAGTGAAAAATGAGCTCCACTAGAAGTTGAAGAGCCCC
AGCAGAGTTGAAAGTGATGAGAAATACAGAGCAGGCCCCACCAGATCTGG
AAACCAATGTGTGAAATGAGTTGAGACTTCAGGTAGGTAGGCGCTCCATA
AAAAATGTTTACTGCCCAAGGGGGTCAGGGTGTCGCAAATGCCAAGTTGA
ATCAAGGCACAGAGAGAATGAGAGTTACAGTCTTCATCGTGGAATTAAGC
AGTATCAATTGCTTGAGCGAGAACTGGTGCATCAAAAGTCTCAGGGCCCT
GGCAGCGGGGGCTAACTACTTCCTCCGCCGTTGATTCCAGTGCTGAGTAA
ACGAACGTGGCAAAGAGAGGTCAAGAGCTCACAGAAAAGCGATCCAGTAA
TGTGCAAAGTCGAAGTTATCCAGAAGATAGAATGAAATCAGATTTGAATC
ACCAAAAAGGGCATGGTGTGTGTGAAAGAAAGTCCGAAGAAGAAGTTGGA
CTGAGGAGGAGGATTTGTCGTCGTCGTCGTGAGTCATCATCATGCCAAGA
ACAGTTCAACATCATGTTCAAAAGCAGTTACACGAGAGCAGAATCTAGAG
GTCACACTTGTGTGCCGCTCACGGTAAGGAGTAGCAGCCCACACAGAAGC
TGTGGCGTTGGAGACTTCGTCACATAGTTAGCCATGTGTTCACGACTTCT
TGGCCGTTCATCCATCATGTGCAGGGGAGGACGGTCGTCACTAGCAGGAG
CCAAGAAGAGCAGGGCACGGCGCTAAAGCGAAGGAGCAGCAGAGGAGCAG
ATGACGGCCATCAGAGTTTTGTGTGTATACTCGATGTAACCAGAAATCGC
CCCACCAGTAGAGCACAAGCTGTCGGGCAGGTGAACAGAGAGATCCCAGA
AGAGCACGAGCATACCAGGCGAGTCAGAAGTCACGAAGAAACCTGACTCA
AGCCCAGGGCCACTCCGCTCAGAGAGCGAGAGCAGCAGAGTTCGGCCTTG
AAAGCAGTCCACCATGGTCCCAGTTTGACGTAAAAGCGACGAACAGTGAA
GAACTCGAAGCCATATCCAGGCGGGcCGCCGATGCGCAAAGCAGAGACGc
AAGCGTGGTGAGGGCCCATAACCAATGGGTGTATGAAGGTGGCTTCACAC
ACAAGTCAAAGGGCAGCCTCACTGGAAGAAGGCATGGGCCAGGCAAGAGC
CTGGCCCTCCAGGCACAAAGGGCCTTGGAAGAGAGAGATGAAGTTTTGAT
AGTTTGATTATTCAGTGGGAGTGGGAATGATGAAACAGGTATGAGCGCAC
AGCGCGTGGTGGTGGCAACAAAGTTGTTGTTGCCAGGTCAGACATGAACA
GCTGTCATTTGGATGGTTGATGGTTGTTGTACGTCAGTCCACATCATCAG
TCATCATTTGTAACTAGAAGTGTGCGGGTTTTCCAAACCAAACCAAATGC
TGAGTTGCTGTGGTTGAGGACGATGCCAACACCCAACGTTTTCCATTCTT
TTTTCTTTTCCTTCTGTTTTGTACTGTTGGCAGCAGGGATGGAAGGAGGA
GGAGGAGGAGAAAGGAGGTGTGTAGCCATTACCGTTTTCTGTTTGTCCCA
TTGGCTGTATTGGTGTTGTTGTGCTGCTGACTGGACCACCTTCATCTTTA
CCTTGATGGAACCTAATTGGAGTTTGGCCAACTTGGTGACTGTGTGAAGA
AGGCATGACTTCATGTCGAAATGTCGGGAGCTGGAGACGCGTATCATTTG
CTAGAAGATCACTTTATTGTTCCGTACAATCAGTGATCACTTTCATTTCG
ATTACAATCATGATAAAATCCATTGCAAGAATTGATCCTTGGCCCCCAAG
ACAATGGGAGGTACCAGTAGATGACCTACCGATGCCCTGGGAATGGGGTC
ATACCTACGGGGCATCCCAAGGGAGATGTGCTCCTACGGGCAAGCTGTTG
GAAGGTCTCCTTCCATTATTTTTTCCCACTGAGAAATATGGGTGTAAGCA
ATAATATACAATGTTGCAAATGGAACTTATCGTATTAGAAGACCTAAGAC
AATAACAAAACTCTTTGGTTCTTGTGCTTGCTGCTCTTTCCATATATGTT
GAAGTTTATGAAGAATCGAGCTTGAAATCGTATCACATTCTTTGCAAAGA
GCTCCAAGATTGATACCTCTCAAATTTTTTGGAAGCCGTAGGAACTACTT
ATTTATTGAGGCAAATGAGCGACACTGTATCCTGCCTAAAGATGTGAAGA
GTTGTTTTAACATTTTCAGCTACGGAGAAATAAGAACAATTCTCTGACAC
CATTCTCCTTCGCATTTTATCGAAAGTCACCAGTCGCTAAGCACCAGCTG
CAGCGGCGACAAGAGAGGAGCACCAGTTATCGTCAAGGTTGTTGGGGCCA
GGAGGTCAAACAAAATCCCAGCTTCAAATTAGGAGTTTCAGATGTTGGGA
CGTAGAATTGGGAATTTTCAAAATACTGATAGCTGGGATTATTCTCAAAA
AGCAAAGAATGCGGGCAAAATACTAATTCGTCTTCTCAAGCAAATTATTC
CCGTTCTGTTGTTCTTTAGAGGGAAGGAAGAAGTGTAATTTTAATGTAGC
TAGGGATCTTTCCCCATAAATTTTCATTTTTCCTTATTCAAAAAATGGAA
CATTTTGGAATAAGAATTTTGTTGAACTTTATTTCTTGCATACATCTGGC
CGATTTGAATGTACACCATCATCATATGATGATGGACGTATAAATGAGAA
TAGGCGGTAGGAGCAAAAGTCAGGGTATACTTACCCAACTGGCAACTGGG
GACTGGGGAAGATGTATTGGTATTAGGCAGATGGATGGACAGGTATGACG
AGCAGGCAAGTATGAATGGCAATCGGTGACCAACCATTGTTATTATTTTT
GGCCAGCCGCTATATGTTAACCCCCTTGCACTCACAGTAGAAACTTTGCC
TGCTGGGCCCAACTTTGGGAGACCACATCACCAGAAGTACTGGGTCTTTT
TGACCCATACAAAGTGCAATAAACTTGGGAAAGAGTGCTATAGTATATTG
ATATAAACTTCAGAAAACCTAGGGATTAGGGTTTCGCCATATTAGTCATT
CCCAGCCAATGATTTCTAAAACAACCAATAAGAATCACTCATCATCAAAA
ATAGTACATTTGCATCTTGATGACTGATGAACAGCTGGTTGTGGACAGGT
GAAGAAGTGAGGTTTTTGTCTGACTCGTCAACAGGCCCGGGCGAAGAAAA
GGTTACTTCGTTTTGGCACACAGAAGTTGAACCATTCGTCAACTACACAA
GGGCAACGTCCAGCAAAAGCAAAACATAAATTTATGATTTTTTCTTACAT
TTTTTTAAGGCTGAAGAAACCAACTTCGGCCAGGCTATATTACTAATAAT
AATAATGTTATTGGTTCGGAAGAAAATGATCTGGAATGTTGTTTCTTGTC
CTTGACTAAAGCTGTGGTTCCTTAGCTTTTATTCGTTGCCGCCACGTTTG
AAATTTGAGATGGGGAAAACAGCTGGTGGCGATGTGGTCTCCCTCTTTGT
ATTTGCCTTTCAAAGAAGGCAACGAACAACGAATTAAGGCGTGCAGTCGT
CAACTGACCACTCCGTACTGCGTCTTACAGAATGATTGGCTGAGATTTTC
CCGGCCCATATTGGACCAATTGAGTGCAAGGGGGTTAGCCTTGGTACCAG
CAGAAGATGTGGGAGCAAATATATCGAATGTTGATGAAAAGTTCAAATGC
ACCCAAACCAATGCAAACTTGATCTGAACCAACCTCAACGGCAACAAGTG
TATTCCATATATCATTACACATCATCGATATCATTTATCATCACATTTGC
ACATGTTTTGCTTATATAATACATATGCATATAATATATATATATATATA
TATATATATTGTCTACGATATAAGCACAAAGTGGAGAAAATAGTTGCATT
CCATATATCATTACACTTGTACCAATATTGAAAACAAAATCTAACAAAAG
TTCCTGCAGAACTGTCGTAACTAGTGTAAAAAGGGCCATATATATAGTGA
TTTCTTTTTAAATGCCAAATGTGACTCATTGTTGTGATCCTTGAGGCCAG
CTTGACTTTTTATGATTGCTGCTGTATTCTGCCTCTTTTTTTATACATAT
CCAATCAAATCAGGTGCAATGCGTACGAGAATTTGATAGAACATGGAGAG
ATGCTACAGATGTTTTCATCAGGATAAAGTAGTAGCAGCAAGT
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Coding sequence (CDS) from alignment at H-akashiwo_Contig10:6207789..6213731+

>mRNA_H-akashiwo_Contig10.139.1 ID=mRNA_H-akashiwo_Contig10.139.1|Name=mRNA_H-akashiwo_Contig10.139.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=156bp|location=Sequence derived from alignment at H-akashiwo_Contig10:6207789..6213731+ (Heterosigma akashiwo CCMP452)
GTTGGACACGGCGCTGCGGGTCGCGGCGGTGCCGGACCCGGCGGCCTTCC
TCGCGGCCGTCCGCGCCCGGAACCAAGGGTACGCCCGGTGCAATGCGTAC
GAGAATTTGATAGAACATGGAGAGATGCTACAGATGTTTTCATCAGGATA
AAGTAG
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