mRNA_H-akashiwo_Contig10.136.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig10.136.1
Unique NamemRNA_H-akashiwo_Contig10.136.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig10.136.1 vs. uniprot
Match: A0A7S3XJR2_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XJR2_HETAK)

HSP 1 Score: 115 bits (288), Expect = 1.320e-28
Identity = 56/58 (96.55%), Postives = 56/58 (96.55%), Query Frame = 2 
Query:    2 VIRGLGRMGCLRPGYDRLGLQNAVRYFTNEFAKTLALPAAPSADVDPEEIKREIRVSR 175
            VIRGLGRMGCLRPGYDRLGLQNAVRYFTNEFAKTLALPAAPSADVDPEEIKREIR  R
Sbjct:  490 VIRGLGRMGCLRPGYDRLGLQNAVRYFTNEFAKTLALPAAPSADVDPEEIKREIRRRR 547
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig10.136.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3XJR2_HETAK1.320e-2896.55Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig10contigH-akashiwo_Contig10:6080081..6080947 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size178
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size177
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387042.2017155-CDS-H-akashiwo_Contig10:6080080..60801681681387042.2017155-CDS-H-akashiwo_Contig10:6080080..6080168Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig10 6080081..6080168 -
1681387042.210242-CDS-H-akashiwo_Contig10:6080858..60809471681387042.210242-CDS-H-akashiwo_Contig10:6080858..6080947Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig10 6080859..6080947 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig10.136.1prot_H-akashiwo_Contig10.136.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig10 6080081..6080947 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig10.136.1

>prot_H-akashiwo_Contig10.136.1 ID=prot_H-akashiwo_Contig10.136.1|Name=mRNA_H-akashiwo_Contig10.136.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=59bp
GHPGPGAHGLPAPGVRPPRPAERRALLHQRVCQDPGLARRALGRCGPRGD
KKGDPGES*
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mRNA from alignment at H-akashiwo_Contig10:6080081..6080947-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig10.136.1 ID=mRNA_H-akashiwo_Contig10.136.1|Name=mRNA_H-akashiwo_Contig10.136.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=867bp|location=Sequence derived from alignment at H-akashiwo_Contig10:6080081..6080947- (Heterosigma akashiwo CCMP452)
GGTCATCCGGGGCCTGGGGCGCATGGGCTGCCTGCGCCCGGGGTACGACC
GCCTCGGCCTGCAGAACGCCGTGCGCTACTTCACCAACGGTGAGGAACCT
GTCCCCGCTTGGGGCCGGTCGTTCCCTTGTTTTTTTTGAAGATTTTAGCT
GTTGCTGTATGTATCCGCGATCCCACCAGCGCGCCGAGCCTCGGTGAGGT
TGTAGCAGCAGCACATTGGCTGCCGCAGTAGTGACACTGCTGCGAACTTA
CGAGGAGCCAACGAGCTTCGAGGCGTATCTTTGCATGCCCACCACCAACC
ACTGCTGTGATGACTGAGTATTGAAAATTATTTTCGTCAAGCTTGTGTGC
ACACTCCCCAACCCTCTGTGATGAACAAACCATGGCACATATAGATTGAA
TTATGTTGAAAAAAATAAAAATTATACATGTATTTAAGGGAGGACAAACA
AAGCTGCTTGCATGCTATATGCAAAGTCGTGTATTTGTCCCTGTCCTTCC
TGATACCGATTATATCCCCGGAAGCAGTCATTGCTATCTCTTCAATCATG
AACTGTTTAATGCTTATTTTAAACTGCGAGCTATAGGCAGCATTGTGGGG
GTGGGGGTGGGGAAATTGAAAAAGGAAGATCCACCGCCCATTGCACCCAT
AGTTCCGGGCTGCATATTTTTTTTTCTCTCCCTAAAAACAATCAAGCTGA
AGAAAAGTACAGTACGGACACGTCCACCTCCTCTTTCCGGCCGGGTTTCA
CGCTGTTCCATATATCCGCTTGCTCTCAGAGTTTGCCAAGACCCTGGCCT
TGCCCGCCGCGCCCTCGGCCGATGTGGACCCCGAGGAGATAAAAAGGGAG
ATCCGGGTGAGTCGTAA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig10:6080081..6080947-

>mRNA_H-akashiwo_Contig10.136.1 ID=mRNA_H-akashiwo_Contig10.136.1|Name=mRNA_H-akashiwo_Contig10.136.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=177bp|location=Sequence derived from alignment at H-akashiwo_Contig10:6080081..6080947- (Heterosigma akashiwo CCMP452)
GGTCATCCGGGGCCTGGGGCGCATGGGCTGCCTGCGCCCGGGGTACGACC
GCCTCGGCCTGCAGAACGCCGTGCGCTACTTCACCAACGAGTTTGCCAAG
ACCCTGGCCTTGCCCGCCGCGCCCTCGGCCGATGTGGACCCCGAGGAGAT
AAAAAGGGAGATCCGGGTGAGTCGTAA
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