mRNA_H-akashiwo_Contig10.127.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig10.127.1
Unique NamemRNA_H-akashiwo_Contig10.127.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig10.127.1 vs. uniprot
Match: A0A3M6V6M0_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6V6M0_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 1.060e-10
Identity = 29/47 (61.70%), Postives = 31/47 (65.96%), Query Frame = 1 
Query:    1 AHCAPCNLRLRVHFPIIVPTSSTLGENERPSCGIRVADELRHWEEGK 141
            AH APCN+RLR HFP+IVP            CGIRV DE RHWEEGK
Sbjct:  178 AHSAPCNIRLRCHFPLIVPEG----------CGIRVGDETRHWEEGK 214
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BLAST of mRNA_H-akashiwo_Contig10.127.1 vs. uniprot
Match: M4B2W2_HYAAE (Asp_Arg_Hydrox domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B2W2_HYAAE)

HSP 1 Score: 60.5 bits (145), Expect = 3.180e-10
Identity = 28/47 (59.57%), Postives = 30/47 (63.83%), Query Frame = 1 
Query:    1 AHCAPCNLRLRVHFPIIVPTSSTLGENERPSCGIRVADELRHWEEGK 141
            AH APCN+RLR HFPI+VP            CGIRV DE R WEEGK
Sbjct:   54 AHSAPCNIRLRCHFPILVPDG----------CGIRVGDETRQWEEGK 90
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BLAST of mRNA_H-akashiwo_Contig10.127.1 vs. uniprot
Match: A0A8K1C3S3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C3S3_PYTOL)

HSP 1 Score: 61.6 bits (148), Expect = 4.290e-10
Identity = 28/47 (59.57%), Postives = 30/47 (63.83%), Query Frame = 1 
Query:    1 AHCAPCNLRLRVHFPIIVPTSSTLGENERPSCGIRVADELRHWEEGK 141
            AH APCN+RLR HFP+ VP            CGIRV DE RHWEEGK
Sbjct:  148 AHSAPCNVRLRCHFPLFVPEG----------CGIRVGDETRHWEEGK 184
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BLAST of mRNA_H-akashiwo_Contig10.127.1 vs. uniprot
Match: A0A7S2A714_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2A714_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 6.690e-10
Identity = 26/47 (55.32%), Postives = 32/47 (68.09%), Query Frame = 1 
Query:    4 HCAPCNLRLRVHFPIIVPTSSTLGE-NERPSCGIRVADELRHWEEGK 141
            H  P NLRLRVH P+IVPT+      NERP CGIRV  ++  W+EG+
Sbjct:   51 HTGPMNLRLRVHLPLIVPTTDGKNNGNERPKCGIRVGSKIHEWKEGE 97
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BLAST of mRNA_H-akashiwo_Contig10.127.1 vs. uniprot
Match: W2RER7_PHYPN (Asp_Arg_Hydrox domain-containing protein n=8 Tax=Phytophthora parasitica TaxID=4792 RepID=W2RER7_PHYPN)

HSP 1 Score: 60.5 bits (145), Expect = 8.060e-10
Identity = 28/47 (59.57%), Postives = 30/47 (63.83%), Query Frame = 1 
Query:    1 AHCAPCNLRLRVHFPIIVPTSSTLGENERPSCGIRVADELRHWEEGK 141
            AH APCN+RLR HFP+IVP            CGIRV DE R WEEGK
Sbjct:  151 AHSAPCNIRLRCHFPLIVPEG----------CGIRVGDETRQWEEGK 187
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BLAST of mRNA_H-akashiwo_Contig10.127.1 vs. uniprot
Match: A0A3R7K0G3_9STRA (Asp_Arg_Hydrox domain-containing protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7K0G3_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 1.870e-9
Identity = 27/47 (57.45%), Postives = 29/47 (61.70%), Query Frame = 1 
Query:    1 AHCAPCNLRLRVHFPIIVPTSSTLGENERPSCGIRVADELRHWEEGK 141
            AH APCN+RLR HFP+ VP            CGIRV DE R WEEGK
Sbjct:   78 AHSAPCNIRLRCHFPLFVPEG----------CGIRVGDETRQWEEGK 114
[Close]
BLAST of mRNA_H-akashiwo_Contig10.127.1 vs. uniprot
Match: A0A067C8Q3_SAPPC (Asp_Arg_Hydrox domain-containing protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067C8Q3_SAPPC)

HSP 1 Score: 59.7 bits (143), Expect = 2.000e-9
Identity = 26/47 (55.32%), Postives = 32/47 (68.09%), Query Frame = 1 
Query:    1 AHCAPCNLRLRVHFPIIVPTSSTLGENERPSCGIRVADELRHWEEGK 141
            AH APCN+RLR HFP+ VP          P+CGIRVADE + W+EG+
Sbjct:  138 AHSAPCNIRLRCHFPLFVP----------PNCGIRVADETKEWKEGE 174
[Close]
BLAST of mRNA_H-akashiwo_Contig10.127.1 vs. uniprot
Match: A0A6A5A8Y7_9STRA (Asp_Arg_Hydrox domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5A8Y7_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 2.280e-9
Identity = 26/47 (55.32%), Postives = 31/47 (65.96%), Query Frame = 1 
Query:    1 AHCAPCNLRLRVHFPIIVPTSSTLGENERPSCGIRVADELRHWEEGK 141
            AH APCN+RLR HFP+ VP          P CGIRVAD+ R W+EG+
Sbjct:  144 AHSAPCNIRLRCHFPLFVP----------PGCGIRVADQTRSWKEGE 180
[Close]
BLAST of mRNA_H-akashiwo_Contig10.127.1 vs. uniprot
Match: A0A836CPE8_9STRA (Putative aspartyl/Asparaginyl beta-hydroxylase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPE8_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 3.110e-9
Identity = 27/46 (58.70%), Postives = 32/46 (69.57%), Query Frame = 1 
Query:    4 HCAPCNLRLRVHFPIIVPTSSTLGENERPSCGIRVADELRHWEEGK 141
            H A CNLRLR HFP+IVP+++         CGIRV DE+R WEEGK
Sbjct:  149 HTAACNLRLRCHFPLIVPSTNA------DECGIRVGDEVRAWEEGK 188
[Close]
BLAST of mRNA_H-akashiwo_Contig10.127.1 vs. uniprot
Match: A0A6A3EN18_9STRA (Asp_Arg_Hydrox domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3EN18_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 3.410e-9
Identity = 27/47 (57.45%), Postives = 29/47 (61.70%), Query Frame = 1 
Query:    1 AHCAPCNLRLRVHFPIIVPTSSTLGENERPSCGIRVADELRHWEEGK 141
            AH APCN+RLR HFP+ VP            CGIRV DE R WEEGK
Sbjct:  147 AHSAPCNIRLRCHFPLFVPEG----------CGIRVGDETRQWEEGK 183
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig10.127.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3M6V6M0_9STRA1.060e-1061.70Uncharacterized protein n=2 Tax=Peronospora effusa... [more]
M4B2W2_HYAAE3.180e-1059.57Asp_Arg_Hydrox domain-containing protein n=1 Tax=H... [more]
A0A8K1C3S3_PYTOL4.290e-1059.57Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S2A714_9STRA6.690e-1055.32Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
W2RER7_PHYPN8.060e-1059.57Asp_Arg_Hydrox domain-containing protein n=8 Tax=P... [more]
A0A3R7K0G3_9STRA1.870e-957.45Asp_Arg_Hydrox domain-containing protein n=2 Tax=P... [more]
A0A067C8Q3_SAPPC2.000e-955.32Asp_Arg_Hydrox domain-containing protein n=3 Tax=S... [more]
A0A6A5A8Y7_9STRA2.280e-955.32Asp_Arg_Hydrox domain-containing protein (Fragment... [more]
A0A836CPE8_9STRA3.110e-958.70Putative aspartyl/Asparaginyl beta-hydroxylase n=1... [more]
A0A6A3EN18_9STRA3.410e-957.45Asp_Arg_Hydrox domain-containing protein n=2 Tax=P... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig10contigH-akashiwo_Contig10:5707799..5709569 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog272952.HpaP800610
PFAMsAsp_Arg_Hydrox
Model size147
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Evalue5.21e-11
EggNOG OGsCOG3555@1|root,KOG3696@2759|Eukaryota,3QDRS@4776|Peronosporales
DescriptionAspartyl/Asparaginyl beta-hydroxylase
Cds size144
COG categoryO
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387045.316125-CDS-H-akashiwo_Contig10:5707799..57078611681387045.316125-CDS-H-akashiwo_Contig10:5707799..5707861Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig10 5707800..5707861 -
1681387045.324894-CDS-H-akashiwo_Contig10:5709487..57095691681387045.324894-CDS-H-akashiwo_Contig10:5709487..5709569Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig10 5709488..5709569 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig10.127.1prot_H-akashiwo_Contig10.127.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig10 5707800..5709569 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig10.127.1

>prot_H-akashiwo_Contig10.127.1 ID=prot_H-akashiwo_Contig10.127.1|Name=mRNA_H-akashiwo_Contig10.127.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=48bp
AHCAPCNLRLRVHFPIIVPTSSTLGENERPSCGIRVADELRHWEEGKT
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mRNA from alignment at H-akashiwo_Contig10:5707799..5709569-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig10.127.1 ID=mRNA_H-akashiwo_Contig10.127.1|Name=mRNA_H-akashiwo_Contig10.127.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1771bp|location=Sequence derived from alignment at H-akashiwo_Contig10:5707799..5709569- (Heterosigma akashiwo CCMP452)
GCTCACTGTGCTCCTTGTAATCTAAGATTACGAGTTCATTTCCCAATCAT
TGTTCCAACTTCAAGCACACTGGGGGAAAATGGTAGGTCTAATGTCTAAT
GCACCAGGCTACCCCTTGTTTTTTATTTCTTATCTTCTGGGAAATGAAGC
ACTGCAGCTGGTGGATGAAACTCTGAAACATGTACTTGCTGCAACCAATA
GGGGATGAGGAAAGAGAAAGATAGGAAGAAAAAAAGGAAGAGCAAGGGGG
GAAAATAAGAGTGCTGATACAATACGCTGTGACACACAGATGTGCTCTTT
TAATGTAGCTGGCAGCAATGGTAATCAAGATTTCACAGTGCGTCAAAGGC
CGAAAGATTAAACTTTTGTAAAACACAGTTGTAACCAGAATACCCTAGTG
TTCTCATTTCTAGGTTCGTGATGCGCACACGCTGCCGTAGCAGCTACTGG
CGGTCGGCTACGATGGGTCCGGCACCTGTGATGCTGGATCCATCAAGCAG
TATGATGGAAATATTGCAAAGCTCGGGTGTTCTTATCATCCAGAACGCCA
ACAACACCTTGTCGAAAATCAGCTGTGAATCTCGTATAGCTGACTATGAT
GATGGGCAACAAGCAAAACCTATACTTCAGTCTTAGGACAGGACGAGGGT
AAGGCAGCAGAAAAAAGCAACGAAGTTCTGCTTCGTATGCCAGCCAACTT
AGCTGCAGCTCGGCTCTCACATTCAGCTGCAGTACACCTACTTTGGTGCA
CACTTAATCCATTATGACACTATGTACTCGCAAAATTCTTTACATTGGCT
CCTTTGTTCTTAGATGAAAATAGTATTATTGATGAGAATAGTATGATCAT
ACATGTGTTGTGAATGTGTGTGCACTGATTGGGGCTTATTCTGAATATCA
TAGTGTAGTTGGTAGAGCGCTCGGTTTCGATGCTCGAAATCACTGGTTCG
ATGCCCAAGCTTAAGCTACCGCCCTCGGGCAATATGTGAAGTTTGGTATT
TCGGTGTTCTCCGTATCGTGGATTGAGGTCTATCGCTGGCGGGCGCTTAC
TCAGTGAAAATTCCAGGAACTGGAAAGTTCTTCGGAACTTGTGAGATTTC
CTCAGAAAATTGTCTGGTGGCTGCGCGGAATGTCCTCGCGTTAGCTGTAG
ACGATCGATGATCCACGCAAGTGGTGGTTGTTGAAACATGAGCATTACCT
ACTGTTCATGAGGCCAGTTTGTGGAAGTTACATTCCATAAGCTTGAAAAA
CGGGCTAGGAAGCAGCACTCGTGCTGCGAAAACAGGGGTGGACTGCGCCA
GTCTTGGTGATACCATCCCGGCCCGCGGGAAGGAGAAGAAGCACTCGTTG
ATGGATGTGAGTTGTCGGAAGAAGCACCTACGGTAGAGACAACTGAAAGA
GGGCGATGAGGCCAAGGGCAATAGAGCATGTAGGGTTAAGGACAGCTGGA
ACTTCGGTTAGTCAGTAGTCAGACTTAGCTCAACGAAGTGCTCAGATGTC
AAAGGCAGCCTGCAAACAGACGGTGATTGTGTGGTTCAGGATGTAAAGGA
ACGCATTGCAAGTAGAACGTATACAAAAAAAAAAGAGAGAGGGAGAGAGA
GAGAGAAAAGAAGAAATACAAAACAAAAAGAACACCAACAAAAATGATCC
ATAGCCTCCATGGTCTTATTTTTTCCCTCCTTTTTTTGTTTTTTGGTGGC
TGGAAAAGAACGCCCAAGCTGTGGAATAAGAGTTGCAGATGAATTGAGGC
ACTGGGAGGAAGGGAAGACGA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig10:5707799..5709569-

>mRNA_H-akashiwo_Contig10.127.1 ID=mRNA_H-akashiwo_Contig10.127.1|Name=mRNA_H-akashiwo_Contig10.127.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=144bp|location=Sequence derived from alignment at H-akashiwo_Contig10:5707799..5709569- (Heterosigma akashiwo CCMP452)
GCTCACTGTGCTCCTTGTAATCTAAGATTACGAGTTCATTTCCCAATCAT
TGTTCCAACTTCAAGCACACTGGGGGAAAATGAACGCCCAAGCTGTGGAA
TAAGAGTTGCAGATGAATTGAGGCACTGGGAGGAAGGGAAGACG
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