mRNA_H-akashiwo_Contig10.124.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig10.124.1
Unique NamemRNA_H-akashiwo_Contig10.124.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig10.124.1 vs. uniprot
Match: A0A7S3XUU6_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XUU6_HETAK)

HSP 1 Score: 111 bits (278), Expect = 1.520e-28
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 1 
Query:    1 AAEIIARERAEADAKIEALKREMEHQKQVEVQRAVEAKLAQEKAAREAEQREVEGHLAGQMARLREM 201
            AAEIIARERAEADAKIEALKREMEHQKQVEVQRAVEAKLAQEKAAREAEQREVEGHLAGQMARLREM
Sbjct:  145 AAEIIARERAEADAKIEALKREMEHQKQVEVQRAVEAKLAQEKAAREAEQREVEGHLAGQMARLREM 211
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig10.124.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3XUU6_HETAK1.520e-28100.00Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig10contigH-akashiwo_Contig10:5550146..5550529 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size204
Hectar predicted targeting categoryother localisation
Exons2
Cds size201
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387042.1611292-CDS-H-akashiwo_Contig10:5550145..55502291681387042.1611292-CDS-H-akashiwo_Contig10:5550145..5550229Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig10 5550146..5550229 +
1681387042.1726453-CDS-H-akashiwo_Contig10:5550410..55505271681387042.1726453-CDS-H-akashiwo_Contig10:5550410..5550527Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig10 5550411..5550527 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig10.124.1prot_H-akashiwo_Contig10.124.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig10 5550146..5550527 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig10.124.1

>prot_H-akashiwo_Contig10.124.1 ID=prot_H-akashiwo_Contig10.124.1|Name=mRNA_H-akashiwo_Contig10.124.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=67bp
AAEIIARERAEADAKIEALKREMEHQKQVEVQRAVEAKLAQEKAAREAEQ
REVEGHLAGQMARLREM
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mRNA from alignment at H-akashiwo_Contig10:5550146..5550529+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig10.124.1 ID=mRNA_H-akashiwo_Contig10.124.1|Name=mRNA_H-akashiwo_Contig10.124.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=384bp|location=Sequence derived from alignment at H-akashiwo_Contig10:5550146..5550529+ (Heterosigma akashiwo CCMP452)
GCGGCTGAGATCATTGCTCGGGAGCGGGCGGAAGCAGACGCCAAGATTGA
GGCGCTTAAGCGGGAGATGGAGCACCAGAAGCAGGTCCGTCCCCCCCCCC
TCTTTCCCCCACCTCCCTGGCTCGCCTGGTCCGGAACAGTCCGCAGCTTG
CAGAGGGCAAGGAACCAGCCGGGTGGGAGGAGTCCCCCCTCAACCCCTCC
CCGCCTTTCCCTCGGCGTGCCCGGCGCACcctcaATCCGCCGCcgccgcc
gcgCCCCCCCTGCAGGTGGAGGTCCAGCGCGCGGTGGAGGCGAAGCTGGC
GCAGGAGAAGGCGGCCCGCGAGGCGGAACAGCGCGAGGTGGAGGGCCACC
TGGCGGGCCAGATGGCCCGGCTGCGCGAGATGCA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig10:5550146..5550529+

>mRNA_H-akashiwo_Contig10.124.1 ID=mRNA_H-akashiwo_Contig10.124.1|Name=mRNA_H-akashiwo_Contig10.124.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=201bp|location=Sequence derived from alignment at H-akashiwo_Contig10:5550146..5550529+ (Heterosigma akashiwo CCMP452)
GCGGCTGAGATCATTGCTCGGGAGCGGGCGGAAGCAGACGCCAAGATTGA
GGCGCTTAAGCGGGAGATGGAGCACCAGAAGCAGGTGGAGGTCCAGCGCG
CGGTGGAGGCGAAGCTGGCGCAGGAGAAGGCGGCCCGCGAGGCGGAACAG
CGCGAGGTGGAGGGCCACCTGGCGGGCCAGATGGCCCGGCTGCGCGAGAT
G
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