mRNA_H-akashiwo_Contig10.123.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig10.123.1
Unique NamemRNA_H-akashiwo_Contig10.123.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig10.123.1 vs. uniprot
Match: A0A7S3XQW1_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XQW1_HETAK)

HSP 1 Score: 224 bits (570), Expect = 1.530e-65
Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 1 
Query:    1 EKKGPPPSMTARAVLGAADTKALDNLPLSDPSRPPVLGPLYYAAPQASAGLGGTFYFAAPHQAAAGIGSLATPSWAFLDPTLAAAAGPPGGTGPVXXXXXXXXXXXXASMAAANSSGPLMTREQFEELQRQ 393
            EKKGPPPSMTARAVLGAADTKALDNLPLSDPSRPPVLGPLYYAAPQASAGLGGTFYFAAPHQAAAGIGSLATPSWAFLDPTLAAAAGPPGGTGPVXXXXXXXXXXXXASMAAANSSGPLMTREQFEELQRQ
Sbjct:  903 EKKGPPPSMTARAVLGAADTKALDNLPLSDPSRPPVLGPLYYAAPQASAGLGGTFYFAAPHQAAAGIGSLATPSWAFLDPTLAAAAGPPGGTGPVXXXXXXXXXXXXASMAAANSSGPLMTREQFEELQRQ 1033
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig10.123.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3XQW1_HETAK1.530e-65100.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig10contigH-akashiwo_Contig10:5540222..5540614 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size394
Hectar predicted targeting categoryother localisation
Exons1
Cds size369
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387042.4567606-UTR-H-akashiwo_Contig10:5540221..55402451681387042.4567606-UTR-H-akashiwo_Contig10:5540221..5540245Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig10 5540222..5540245 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387042.469318-CDS-H-akashiwo_Contig10:5540245..55406141681387042.469318-CDS-H-akashiwo_Contig10:5540245..5540614Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig10 5540246..5540614 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig10.123.1prot_H-akashiwo_Contig10.123.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig10 5540246..5540614 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig10.123.1

>prot_H-akashiwo_Contig10.123.1 ID=prot_H-akashiwo_Contig10.123.1|Name=mRNA_H-akashiwo_Contig10.123.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=123bp
MTARAVLGAADTKALDNLPLSDPSRPPVLGPLYYAAPQASAGLGGTFYFA
APHQAAAGIGSLATPSWAFLDPTLAAAAGPPGGTGPVPSLAFTDPAMVAA
SMAAANSSGPLMTREQFEELQRQ
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mRNA from alignment at H-akashiwo_Contig10:5540222..5540614+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig10.123.1 ID=mRNA_H-akashiwo_Contig10.123.1|Name=mRNA_H-akashiwo_Contig10.123.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=393bp|location=Sequence derived from alignment at H-akashiwo_Contig10:5540222..5540614+ (Heterosigma akashiwo CCMP452)
GAGAAGAAGGGTCCGCCGCCAAGCATGACCGCACGTGCGGTACTGGGAGC
GGCGGACACCAAGGCTCTTGACAACCTCCCGCTCTCGGACCCCTCAAGGC
CACCAGTTCTTGGCCCCCTCTACTATGCAGCACCCCAGGCTTCTGCGGGC
CTTGGTGGTACCTTCTATTTTGCAGCGCCTCATCAAGCTGCTGCAGGCAT
TGGCTCGCTAGCTACCCCTTCATGGGCATTTTTAGACCCAACGCTGGCAG
CGGCAGCAGGGCCACCAGGAGGCACTGGCCCTGTGCCCTCTTTGGCCTTC
ACAGACCCTGCAATGGTGGCGGCGTCGATGGCAGCCGCGAATAGTAGTGG
CCCTTTGATGACGCGCGAGCAGTTTGAGGAGCTGCAGCGGCAG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig10:5540222..5540614+

>mRNA_H-akashiwo_Contig10.123.1 ID=mRNA_H-akashiwo_Contig10.123.1|Name=mRNA_H-akashiwo_Contig10.123.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=369bp|location=Sequence derived from alignment at H-akashiwo_Contig10:5540222..5540614+ (Heterosigma akashiwo CCMP452)
ATGACCGCACGTGCGGTACTGGGAGCGGCGGACACCAAGGCTCTTGACAA
CCTCCCGCTCTCGGACCCCTCAAGGCCACCAGTTCTTGGCCCCCTCTACT
ATGCAGCACCCCAGGCTTCTGCGGGCCTTGGTGGTACCTTCTATTTTGCA
GCGCCTCATCAAGCTGCTGCAGGCATTGGCTCGCTAGCTACCCCTTCATG
GGCATTTTTAGACCCAACGCTGGCAGCGGCAGCAGGGCCACCAGGAGGCA
CTGGCCCTGTGCCCTCTTTGGCCTTCACAGACCCTGCAATGGTGGCGGCG
TCGATGGCAGCCGCGAATAGTAGTGGCCCTTTGATGACGCGCGAGCAGTT
TGAGGAGCTGCAGCGGCAG
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