mRNA_H-akashiwo_Contig10.120.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig10.120.1
Unique NamemRNA_H-akashiwo_Contig10.120.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig10.120.1 vs. uniprot
Match: A0A835YR37_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR37_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 1.660e-9
Identity = 29/49 (59.18%), Postives = 39/49 (79.59%), Query Frame = 1 
Query:   43 VAMAEIAPTEADSTRSRKKFIAYKKELAKCQQGGLGVNVCQDIMSKYTA 189
            V  A  A    D++ +R+++IAYKKELAKCQQGGLGVNVCQ+++ +YTA
Sbjct:  388 VLAAVAAEPAGDASSARRRYIAYKKELAKCQQGGLGVNVCQNLLERYTA 436
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BLAST of mRNA_H-akashiwo_Contig10.120.1 vs. uniprot
Match: A0A0G4G2V7_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4G2V7_VITBC)

HSP 1 Score: 52.4 bits (124), Expect = 2.760e-5
Identity = 25/54 (46.30%), Postives = 36/54 (66.67%), Query Frame = 1 
Query:   19 ELNARQSRVAMAEIAPTEADSTRSRKKFIAYKKELAKCQQGGLGVNVCQDIMSK 180
            +L A  + VA   + P+ +D +  R K+I  KK LAKCQQGG+GVNVC D++ +
Sbjct:  225 QLIAEPAEVAPFTLLPSASDDSPRRDKYIKIKKVLAKCQQGGVGVNVCGDVLKQ 278
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig10.120.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835YR37_9STRA1.660e-959.18Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A0G4G2V7_VITBC2.760e-546.30Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig10contigH-akashiwo_Contig10:5374977..5375743 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size408
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size147
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387045.219814-UTR-H-akashiwo_Contig10:5374976..53750241681387045.219814-UTR-H-akashiwo_Contig10:5374976..5375024Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig10 5374977..5375024 +
1681387045.2487063-UTR-H-akashiwo_Contig10:5375530..53757431681387045.2487063-UTR-H-akashiwo_Contig10:5375530..5375743Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig10 5375531..5375743 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387045.2304666-CDS-H-akashiwo_Contig10:5375024..53750271681387045.2304666-CDS-H-akashiwo_Contig10:5375024..5375027Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig10 5375025..5375027 +
1681387045.2392235-CDS-H-akashiwo_Contig10:5375386..53755301681387045.2392235-CDS-H-akashiwo_Contig10:5375386..5375530Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig10 5375387..5375530 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig10.120.1prot_H-akashiwo_Contig10.120.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig10 5375025..5375530 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig10.120.1

>prot_H-akashiwo_Contig10.120.1 ID=prot_H-akashiwo_Contig10.120.1|Name=mRNA_H-akashiwo_Contig10.120.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=49bp
MAEIAPTEADSTRSRKKFIAYKKELAKCQQGGLGVNVCQDIMSKYTAK*
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mRNA from alignment at H-akashiwo_Contig10:5374977..5375743+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig10.120.1 ID=mRNA_H-akashiwo_Contig10.120.1|Name=mRNA_H-akashiwo_Contig10.120.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=767bp|location=Sequence derived from alignment at H-akashiwo_Contig10:5374977..5375743+ (Heterosigma akashiwo CCMP452)
ATCAACGCGTTCATCGGGGAGCTGAACGCGCGCCAGAGCAGGGTGGCGAT
GGTGAGTGGGGTGACGCAGTAGCCCCGGCGCCGCCGGCGCTCGTTGTTCC
AGTTTTTGTGCCGGCTGCCTGTTTGTAACGCCCTGCCGTACTCTGTTGGG
AGCTGCACTGTATTTTGTGCCCTTTGTCCATGTCTGTTTTTTTTTTTTTT
TTTTCTTTTTTTTTTCACTACGACAGTGTATACAGCGTACCAAGTGAAGC
GTTTTCTGGCACGTGGTGGCCCCCTTTTGCACAGCCAGCATATATACTTA
TATTCCAAAAACAAGTATTGCTGCTCCATATATTCTGCGTTGACACCTTC
TCCTCCCTTTTTCCTTTCTTTGTGTCCCTACCTACACATGTATATTTGTG
TGTGTGTCAGGCTGAGATTGCCCCCACCGAAGCGGACAGCACCCGCAGCC
GGAAGAAGTTCATCGCGTACAAGAAGGAGTTGGCCAAGTGCCAGCAGGGC
GGCCTGGGAGTGAACGTGTGCCAGGACATCATGTCCAAGTACACTGCGAA
GTGACCCTCTTTCCGCAGCTTGAGCTGAGCTGCTGCGGGTGCCTGCTTCT
GGTGTGTCGTGCTGGCTCGGGTCCAATCAGACAGGGACAGGGTGTGGTGG
TGTGAAACCACCAGTGACTGGTGTTTATGTCGGGGATAAAGAATGACAAC
AATGATATGATATATTCATACACATGTTGTTACTTGCATAATAAAATATA
CATATATTATGATCGTA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig10:5374977..5375743+

>mRNA_H-akashiwo_Contig10.120.1 ID=mRNA_H-akashiwo_Contig10.120.1|Name=mRNA_H-akashiwo_Contig10.120.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=147bp|location=Sequence derived from alignment at H-akashiwo_Contig10:5374977..5375743+ (Heterosigma akashiwo CCMP452)
ATGGCTGAGATTGCCCCCACCGAAGCGGACAGCACCCGCAGCCGGAAGAA
GTTCATCGCGTACAAGAAGGAGTTGGCCAAGTGCCAGCAGGGCGGCCTGG
GAGTGAACGTGTGCCAGGACATCATGTCCAAGTACACTGCGAAGTGA
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