mRNA_H-akashiwo_Contig10.119.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig10.119.1
Unique NamemRNA_H-akashiwo_Contig10.119.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig10.119.1 vs. uniprot
Match: A0A7R9Y919_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9Y919_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 2.660e-15
Identity = 42/96 (43.75%), Postives = 59/96 (61.46%), Query Frame = 3 
Query:  354 LPDFTLKEVAKVAPTLQFNIDYYLFEFKAIVEDPTKWGDMLDAFRASSDARFASVSRFERDFYTPMRNLGQAFPEEQGGDELLAAARGLEGAAARL 641
            LP  + K +   A  L F +D Y+F+    +ED TKW D+L   ++SSDARF SVSR ERD  +P+R+L Q  PE+ GG ++  A  GL  + A+L
Sbjct:   36 LPPQSQKVLVSNAQRLVFAVDAYVFDLAEDLEDTTKWADVLGQLQSSSDARFVSVSRIERDVISPLRSLSQGLPEDAGGADIDEAVNGLVVSMAKL 131
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BLAST of mRNA_H-akashiwo_Contig10.119.1 vs. uniprot
Match: A0A0G4G2V7_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4G2V7_VITBC)

HSP 1 Score: 79.3 bits (194), Expect = 3.980e-14
Identity = 45/120 (37.50%), Postives = 69/120 (57.50%), Query Frame = 3 
Query:  294 FQEKASAFSPLMMADED---DLPLPDFTLKEVAKVAPTLQFNIDYYLFEFKAIVEDPTKWGDMLDAFRASSDARFASVSRFERDFYTPMRNLGQAFPEEQGGDELLAAARGLEGAAARLE 644
            F   A A S  ++ D+    + PLP  ++K   + AP LQ + D+YLF+    +   + W D+LD F+ S  ARF SVSR +RDF++PMR L ++ PE++GG +L       E +  RL+
Sbjct:   70 FPAAALAVSNALLLDDAVAVEPPLPS-SIKSFRQYAPQLQLSGDFYLFDLAEDIRT-SNWDDVLDQFKVSGSARFVSVSRMDRDFFSPMRLLAKSVPEDEGGSDLEQVTERFESSMRRLQ 187
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig10.119.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7R9Y919_9STRA2.660e-1543.75Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A0G4G2V7_VITBC3.980e-1437.50Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig10contigH-akashiwo_Contig10:5374249..5374895 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2903.EOD33440
Model size648
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorychloroplast
Exons1
Evalue6e-09
EggNOG OGs2ERQ7@1|root,2SUFH@2759|Eukaryota
Cds size570
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387045.1765835-UTR-H-akashiwo_Contig10:5374248..53743251681387045.1765835-UTR-H-akashiwo_Contig10:5374248..5374325Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig10 5374249..5374325 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387045.1914597-CDS-H-akashiwo_Contig10:5374325..53748951681387045.1914597-CDS-H-akashiwo_Contig10:5374325..5374895Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig10 5374326..5374895 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig10.119.1prot_H-akashiwo_Contig10.119.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig10 5374326..5374895 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig10.119.1

>prot_H-akashiwo_Contig10.119.1 ID=prot_H-akashiwo_Contig10.119.1|Name=mRNA_H-akashiwo_Contig10.119.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=190bp
MNSKCYIFLYVGLWASASSCAFQVSSNSHNGAVLRMMAMDGSPGEGNILQ
GRGVSRASFISAVCAPAMLSLAFQEKASAFSPLMMADEDDLPLPDFTLKE
VAKVAPTLQFNIDYYLFEFKAIVEDPTKWGDMLDAFRASSDARFASVSRF
ERDFYTPMRNLGQAFPEEQGGDELLAAARGLEGAAARLEE
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mRNA from alignment at H-akashiwo_Contig10:5374249..5374895+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig10.119.1 ID=mRNA_H-akashiwo_Contig10.119.1|Name=mRNA_H-akashiwo_Contig10.119.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=647bp|location=Sequence derived from alignment at H-akashiwo_Contig10:5374249..5374895+ (Heterosigma akashiwo CCMP452)
CTTTGGCAGCCGCAAGGTGTGAACTTTGGGACATAATATAATAGGTCAGG
CGGCATAATATATCTTTGACTAGGAGGATGAATTCTAAGTGCTACATCTT
TCTGTACGTCGGGCTTTGGGCAAGCGCATCCTCGTGCGCTTTCCAAGTCT
CCTCGAATTCGCATAATGGAGCTGTATTGAGAATGATGGCCATGGATGGC
TCTCCTGGTGAAGGAAACATCCTTCAGGGAAGGGGTGTCAGCCGGGCCTC
CTTTATCTCCGCAGTTTGCGCTCCTGCGATGCTGAGCTTGGCATTTCAGG
AGAAGGCAAGCGCATTCTCACCTCTCATGATGGCTGACGAGGACGACCTG
CCGCTGCCGGATTTCACTCTCAAAGAAGTTGCCAAGGTAGCCCCAACACT
GCAGTTCAACATCGACTACTACTTGTTCGAGTTCAAGGCCATCGTCGAGG
ACCCGACCAAGTGGGGCGACATGCTGGACGCCTTCCGCGCCTCCTCGGAC
GCCCGCTTCGCCAGCGTGTCCCGGTTCGAGCGGGACTTCTACACGCCCAT
GCGCAACCTGGGCCAGGCCTTCCCGGAGGAGCAGGGCGGCGACGAGCTGC
TGGCGGCCGCACGGGGGCTGGAGGGCGCCGCGGCGCGGCTGGAGGAG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig10:5374249..5374895+

>mRNA_H-akashiwo_Contig10.119.1 ID=mRNA_H-akashiwo_Contig10.119.1|Name=mRNA_H-akashiwo_Contig10.119.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=570bp|location=Sequence derived from alignment at H-akashiwo_Contig10:5374249..5374895+ (Heterosigma akashiwo CCMP452)
ATGAATTCTAAGTGCTACATCTTTCTGTACGTCGGGCTTTGGGCAAGCGC
ATCCTCGTGCGCTTTCCAAGTCTCCTCGAATTCGCATAATGGAGCTGTAT
TGAGAATGATGGCCATGGATGGCTCTCCTGGTGAAGGAAACATCCTTCAG
GGAAGGGGTGTCAGCCGGGCCTCCTTTATCTCCGCAGTTTGCGCTCCTGC
GATGCTGAGCTTGGCATTTCAGGAGAAGGCAAGCGCATTCTCACCTCTCA
TGATGGCTGACGAGGACGACCTGCCGCTGCCGGATTTCACTCTCAAAGAA
GTTGCCAAGGTAGCCCCAACACTGCAGTTCAACATCGACTACTACTTGTT
CGAGTTCAAGGCCATCGTCGAGGACCCGACCAAGTGGGGCGACATGCTGG
ACGCCTTCCGCGCCTCCTCGGACGCCCGCTTCGCCAGCGTGTCCCGGTTC
GAGCGGGACTTCTACACGCCCATGCGCAACCTGGGCCAGGCCTTCCCGGA
GGAGCAGGGCGGCGACGAGCTGCTGGCGGCCGCACGGGGGCTGGAGGGCG
CCGCGGCGCGGCTGGAGGAG
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