mRNA_H-akashiwo_Contig1.280.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1.280.1
Unique NamemRNA_H-akashiwo_Contig1.280.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
[Close]
BLAST of mRNA_H-akashiwo_Contig1.280.1 vs. uniprot
Match: A0A7S3F0C4_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3F0C4_9EUKA)

HSP 1 Score: 86.3 bits (212), Expect = 1.270e-17
Identity = 53/114 (46.49%), Postives = 65/114 (57.02%), Query Frame = 2 
Query:  314 QEALSDFGLVSVKTVCHPIPS--------------RDKARDLIVDILSKHLAYGNDLMSKEIAGQWADSFLAPVNTDTDFFTGTADTATINQGVVFVQND----TVGCLWVGDE 601
            QEAL   GL +V  +   I S              +D+AR+LIV  LS  L  G + M   +A +WAD+FLAPV   T  FTGTA+TA IN GVVFV  +    +VGCLWVGDE
Sbjct:    1 QEALKGLGLGAVDLIADRITSDGGPFGKLTRGGTAKDEARELIVQCLSHGLTDGINTMPAVLAREWADAFLAPVGPTTPLFTGTAETAPINTGVVFVLGEGTQRSVGCLWVGDE 114
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1.280.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3F0C4_9EUKA1.270e-1746.49Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1contigH-akashiwo_Contig1:11601133..11601906 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size774
Hectar predicted targeting categoryother localisation
Exons1
Cds size549
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387032.8462396-UTR-H-akashiwo_Contig1:11601132..116011901681387032.8462396-UTR-H-akashiwo_Contig1:11601132..11601190Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1 11601133..11601190 +
1681387032.870431-UTR-H-akashiwo_Contig1:11601739..116019061681387032.870431-UTR-H-akashiwo_Contig1:11601739..11601906Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1 11601740..11601906 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387032.8598506-CDS-H-akashiwo_Contig1:11601190..116017391681387032.8598506-CDS-H-akashiwo_Contig1:11601190..11601739Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1 11601191..11601739 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1.280.1prot_H-akashiwo_Contig1.280.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1 11601191..11601739 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1.280.1

>prot_H-akashiwo_Contig1.280.1 ID=prot_H-akashiwo_Contig1.280.1|Name=mRNA_H-akashiwo_Contig1.280.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=183bp
MASSPGPFLVDSVQSNSSWILALSAARNGGVVHGGWKTFSPQVEQRLFSN
GDVYTEDEFMAVHGFATYYPLWKQGSLVTDRPTAWQEALSDFGLVSVKTV
CHPIPSRDKARDLIVDILSKHLAYGNDLMSKEIAGQWADSFLAPVNTDTD
FFTGTADTATINQGVVFVQNDTVGCLWVGDED*
back to top

mRNA from alignment at H-akashiwo_Contig1:11601133..11601906+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1.280.1 ID=mRNA_H-akashiwo_Contig1.280.1|Name=mRNA_H-akashiwo_Contig1.280.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=774bp|location=Sequence derived from alignment at H-akashiwo_Contig1:11601133..11601906+ (Heterosigma akashiwo CCMP452)
ACGAAACAAAGTTTTTTGCTATAAATATTGGGTAAGAAACAGTGTATTTC
GCTAGACCATGGCATCGTCTCCCGGCCCTTTCTTGGTGGATTCAGTCCAG
TCGAACTCTTCCTGGATCCTGGCACTCTCCGCTGCTAGAAACGGTGGCGT
GGTGCACGGTGGTTGGAAAACCTTCTCTCCGCAGGTGGAGCAGCGCCTTT
TCTCCAACGGCGACGTCTACACGGAGGATGAATTTATGGCTGTCCACGGA
TTCGCTACCTACTACCCCCTGTGGAAACAGGGAAGTCTTGTAACTGACCG
ACCAACTGCCTGGCAGGAAGCGCTCTCAGACTTCGGCCTGGTCTCCGTGA
AGACAGTCTGCCACCCGATCCCTTCCCGCGACAAGGCGCGCGACCTCATC
GTCGATATTCTCTCAAAACACTTAGCCTACGGCAACGACCTCATGTCAAA
GGAGATTGCGGGACAGTGGGCGGACAGCTTCCTCGCTCCGGTAAACACGG
ACACTGACTTTTTCACGGGCACCGCGGACACCGCCACAATCAACCAAGGT
GTGGTGTTTGTTCAAAATGACACCGTGGGCTGCTTGTGGGTCGGCGACGA
GGACTGAAGGTATGAAAAAAAAAAAAAGGTAGTGAGATGGGTCTCTAAGG
TTGTAGCTACATTGAAGAATACGGGTGTTAAGATACATCACTCTTTCTCT
TATTGGATGGAACAACGGAGTTGTTAGCACGGAGTTGATTTTAGTTTCAA
AGCAACATTTCTACTATGCATTAT
back to top

Coding sequence (CDS) from alignment at H-akashiwo_Contig1:11601133..11601906+

>mRNA_H-akashiwo_Contig1.280.1 ID=mRNA_H-akashiwo_Contig1.280.1|Name=mRNA_H-akashiwo_Contig1.280.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=549bp|location=Sequence derived from alignment at H-akashiwo_Contig1:11601133..11601906+ (Heterosigma akashiwo CCMP452)
ATGGCATCGTCTCCCGGCCCTTTCTTGGTGGATTCAGTCCAGTCGAACTC
TTCCTGGATCCTGGCACTCTCCGCTGCTAGAAACGGTGGCGTGGTGCACG
GTGGTTGGAAAACCTTCTCTCCGCAGGTGGAGCAGCGCCTTTTCTCCAAC
GGCGACGTCTACACGGAGGATGAATTTATGGCTGTCCACGGATTCGCTAC
CTACTACCCCCTGTGGAAACAGGGAAGTCTTGTAACTGACCGACCAACTG
CCTGGCAGGAAGCGCTCTCAGACTTCGGCCTGGTCTCCGTGAAGACAGTC
TGCCACCCGATCCCTTCCCGCGACAAGGCGCGCGACCTCATCGTCGATAT
TCTCTCAAAACACTTAGCCTACGGCAACGACCTCATGTCAAAGGAGATTG
CGGGACAGTGGGCGGACAGCTTCCTCGCTCCGGTAAACACGGACACTGAC
TTTTTCACGGGCACCGCGGACACCGCCACAATCAACCAAGGTGTGGTGTT
TGTTCAAAATGACACCGTGGGCTGCTTGTGGGTCGGCGACGAGGACTGA
back to top