mRNA_H-akashiwo_Contig1.262.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1.262.1
Unique NamemRNA_H-akashiwo_Contig1.262.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
[Close]
BLAST of mRNA_H-akashiwo_Contig1.262.1 vs. uniprot
Match: A0A225W9M4_9STRA (UDP-N-acetylglucosamine transferase subunit ALG14 n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225W9M4_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 4.450e-6
Identity = 28/57 (49.12%), Postives = 34/57 (59.65%), Query Frame = 1 
Query:    4 YVPLTFVVAQTDHTSEKRVRHHYEKRPEKLAGSSFVYIPRSREVGQGWPSSAAATAR 174
            Y P+TFVVA+TD TS+ R    +E   +     SF  IPRSREVGQ W S+   T R
Sbjct:   88 YTPITFVVAETDKTSQTRTELDWEPTEK----DSFAVIPRSREVGQSWSSTVWTTLR 140
[Close]
BLAST of mRNA_H-akashiwo_Contig1.262.1 vs. uniprot
Match: M4B8Y0_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B8Y0_HYAAE)

HSP 1 Score: 50.4 bits (119), Expect = 5.100e-6
Identity = 27/51 (52.94%), Postives = 34/51 (66.67%), Query Frame = 1 
Query:    4 YVPLTFVVAQTDHTSEKRVRHHYEKRPEKLAGSSFVYIPRSREVGQGWPSS 156
            Y  ++FV+A+TD TS+KR +  Y+ R    A  SF  IPRSREVGQ W SS
Sbjct:   83 YTYISFVLAETDKTSQKRTQLDYDVRE---ATDSFDIIPRSREVGQSWSSS 130
[Close]
BLAST of mRNA_H-akashiwo_Contig1.262.1 vs. uniprot
Match: A0A421GWA6_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421GWA6_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 6.060e-6
Identity = 27/51 (52.94%), Postives = 35/51 (68.63%), Query Frame = 1 
Query:    4 YVPLTFVVAQTDHTSEKRVRHHYEKRPEKLAGSSFVYIPRSREVGQGWPSS 156
            Y P+TFVVA+TD TS+++ +  ++  P K    SF  IPRSREVGQ W SS
Sbjct:   85 YTPITFVVAETDKTSQEKTQLDWK--PTK--SDSFAIIPRSREVGQSWSSS 131
[Close]
BLAST of mRNA_H-akashiwo_Contig1.262.1 vs. uniprot
Match: A0A3M6VIM2_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VIM2_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 8.140e-6
Identity = 27/51 (52.94%), Postives = 32/51 (62.75%), Query Frame = 1 
Query:    4 YVPLTFVVAQTDHTSEKRVRHHYEKRPEKLAGSSFVYIPRSREVGQGWPSS 156
            Y P+TFVVAQTD TS+ +    ++      A  SF  IPRSREVGQ W SS
Sbjct:   88 YTPITFVVAQTDKTSQMKTELDWKL----TAIDSFAIIPRSREVGQSWMSS 134
[Close]
BLAST of mRNA_H-akashiwo_Contig1.262.1 vs. uniprot
Match: A0A2P4XT91_9STRA (UDP-N-acetylglucosamine transferase subunit ALG14 n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XT91_9STRA)

HSP 1 Score: 49.3 bits (116), Expect = 1.310e-5
Identity = 26/57 (45.61%), Postives = 34/57 (59.65%), Query Frame = 1 
Query:    4 YVPLTFVVAQTDHTSEKRVRHHYEKRPEKLAGSSFVYIPRSREVGQGWPSSAAATAR 174
            Y P+TFVVA+TD TS+ + +  ++         SF  IPRSREVGQ W S+   T R
Sbjct:   88 YTPITFVVAETDKTSQTKTKLDWKP----TERDSFAVIPRSREVGQSWSSTVWTTLR 140
[Close]
BLAST of mRNA_H-akashiwo_Contig1.262.1 vs. uniprot
Match: W2QR22_PHYPN (Uncharacterized protein n=7 Tax=Phytophthora parasitica TaxID=4792 RepID=W2QR22_PHYPN)

HSP 1 Score: 48.9 bits (115), Expect = 1.930e-5
Identity = 26/57 (45.61%), Postives = 34/57 (59.65%), Query Frame = 1 
Query:    4 YVPLTFVVAQTDHTSEKRVRHHYEKRPEKLAGSSFVYIPRSREVGQGWPSSAAATAR 174
            Y P+TFVVA+TD TS+ +    ++   +     SF  IPRSREVGQ W S+   T R
Sbjct:   88 YTPITFVVAETDKTSQTKTELDWKPNDK----DSFAIIPRSREVGQSWSSTVWTTLR 140
[Close]
BLAST of mRNA_H-akashiwo_Contig1.262.1 vs. uniprot
Match: G4ZTR2_PHYSP (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=G4ZTR2_PHYSP)

HSP 1 Score: 48.5 bits (114), Expect = 4.160e-5
Identity = 26/57 (45.61%), Postives = 33/57 (57.89%), Query Frame = 1 
Query:    4 YVPLTFVVAQTDHTSEKRVRHHYEKRPEKLAGSSFVYIPRSREVGQGWPSSAAATAR 174
            Y P+TFVVA+TD TS+ +    ++         SF  IPRSREVGQ W S+   T R
Sbjct:   81 YTPITFVVAETDKTSQAKTELDWKP----TETDSFAIIPRSREVGQSWSSTVWTTLR 133
[Close]
BLAST of mRNA_H-akashiwo_Contig1.262.1 vs. uniprot
Match: D0NL99_PHYIT (UDP-N-acetylglucosamine transferase subunit ALG14 n=10 Tax=Phytophthora TaxID=4783 RepID=D0NL99_PHYIT)

HSP 1 Score: 48.5 bits (114), Expect = 4.300e-5
Identity = 26/57 (45.61%), Postives = 33/57 (57.89%), Query Frame = 1 
Query:    4 YVPLTFVVAQTDHTSEKRVRHHYEKRPEKLAGSSFVYIPRSREVGQGWPSSAAATAR 174
            Y P+TFVVA+TD TS+ +    ++         SF  IPRSREVGQ W S+   T R
Sbjct:   88 YTPITFVVAETDKTSQAKTELDWKP----TQRDSFAIIPRSREVGQSWSSTVWTTLR 140
[Close]
BLAST of mRNA_H-akashiwo_Contig1.262.1 vs. uniprot
Match: H3G545_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G545_PHYRM)

HSP 1 Score: 47.8 bits (112), Expect = 5.030e-5
Identity = 24/50 (48.00%), Postives = 30/50 (60.00%), Query Frame = 1 
Query:    4 YVPLTFVVAQTDHTSEKRVRHHYEKRPEKLAGSSFVYIPRSREVGQGWPS 153
            Y P+TFVVA+TD TS+ +    ++         SF  IPRSREVGQ W S
Sbjct:   29 YTPITFVVAETDKTSQAKTELDWKP----TETDSFAIIPRSREVGQSWSS 74
[Close]
BLAST of mRNA_H-akashiwo_Contig1.262.1 vs. uniprot
Match: A0A8J5ISY0_9STRA (CN hydrolase domain-containing protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5ISY0_9STRA)

HSP 1 Score: 48.5 bits (114), Expect = 5.330e-5
Identity = 26/57 (45.61%), Postives = 33/57 (57.89%), Query Frame = 1 
Query:    4 YVPLTFVVAQTDHTSEKRVRHHYEKRPEKLAGSSFVYIPRSREVGQGWPSSAAATAR 174
            Y P+TFVVA+TD TS+ +    ++         SF  IPRSREVGQ W S+   T R
Sbjct:   85 YTPITFVVAETDKTSQAKTELDWKPNER----DSFAVIPRSREVGQSWSSTVWTTLR 137
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1.262.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A225W9M4_9STRA4.450e-649.12UDP-N-acetylglucosamine transferase subunit ALG14 ... [more]
M4B8Y0_HYAAE5.100e-652.94Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
A0A421GWA6_9STRA6.060e-652.94Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
A0A3M6VIM2_9STRA8.140e-652.94Uncharacterized protein n=1 Tax=Peronospora effusa... [more]
A0A2P4XT91_9STRA1.310e-545.61UDP-N-acetylglucosamine transferase subunit ALG14 ... [more]
W2QR22_PHYPN1.930e-545.61Uncharacterized protein n=7 Tax=Phytophthora paras... [more]
G4ZTR2_PHYSP4.160e-545.61Uncharacterized protein n=4 Tax=Phytophthora TaxID... [more]
D0NL99_PHYIT4.300e-545.61UDP-N-acetylglucosamine transferase subunit ALG14 ... [more]
H3G545_PHYRM5.030e-548.00Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A8J5ISY0_9STRA5.330e-545.61CN hydrolase domain-containing protein n=1 Tax=Phy... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1contigH-akashiwo_Contig1:10702261..10710451 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog42099.EPrPV00000019345
PFAMsAlg14
Model size178
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.59e-07
EggNOG OGsKOG3339@1|root,KOG3339@2759|Eukaryota,1MB9N@121069|Pythiales
DescriptionUDP-N-acetylglucosamine transferase subunit ALG14. Source PGD
Cds size177
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387032.0311894-CDS-H-akashiwo_Contig1:10702260..107023851681387032.0311894-CDS-H-akashiwo_Contig1:10702260..10702385Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1 10702261..10702385 +
1681387032.042572-CDS-H-akashiwo_Contig1:10710398..107104501681387032.042572-CDS-H-akashiwo_Contig1:10710398..10710450Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1 10710399..10710450 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1.262.1prot_H-akashiwo_Contig1.262.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1 10702261..10710450 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1.262.1

>prot_H-akashiwo_Contig1.262.1 ID=prot_H-akashiwo_Contig1.262.1|Name=mRNA_H-akashiwo_Contig1.262.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=59bp
RYVPLTFVVAQTDHTSEKRVRHHYEKRPEKLAGSSFVYIPRSREVGQGWP
SSAAATARA
back to top

mRNA from alignment at H-akashiwo_Contig1:10702261..10710451+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1.262.1 ID=mRNA_H-akashiwo_Contig1.262.1|Name=mRNA_H-akashiwo_Contig1.262.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=8191bp|location=Sequence derived from alignment at H-akashiwo_Contig1:10702261..10710451+ (Heterosigma akashiwo CCMP452)
AGGTATGTGCCTTTGACGTTTGTGGTGGCTCAGACAGACCATACATCAGA
AAAAAGAGTAAGACATCACTATGAAAAAAGGCCTGAAAAACTGGCTGGGT
CATCTTTTGTTTATATTCCTCGCAGGTACAGTGAGTGTATAAGGAAGGCT
CTAATCCAAAAGATGTGTTATTTATAATATAAAACATGTTTTACAAAATA
TGTATTTTTGAATATATTATGTTATGGCAGAGTAGTGGCAAAGTGCAGAG
CTTTCAGAACAGAGGTGTATCACCTAACTTAGCAAGTTAGTGGATTGTGG
TGGGTGAGAGATAATTTAGGGTTGAGTATTTTCTTTTCATATTTCAGATT
ATGGTGCTAATTGTTGGGTCGATCTCAATGATGAGGTGCGAGTTCAGAAA
GAAACAAAATAAACAGTCTCAATTTTCCCTTCAGCAGCAGAAGTCTTCTT
TTCGATAGAGGCAACAGAGTAGAACTCCAGTAAAGATGTAAAACCTATTT
TTGACATTATTCTTCTGCAATCAGAGGCGCAAGTCAAATCTTGGTTCTTT
TTTGCTTTGTTGACTTCAGAAGTATTTCACCGTAGAAGAATTAATTATTG
TTTCTCAGAAGCCATAAGTCTTCATCGTACAATACCAAATGATTCTGTCG
AGCTATTATGATTACTGTTGTCGAGAATAATTCACTCCGTGCTCATTTTT
TTTTTTTTTCACGTTTGTTCAGGCGATACCCCCTCCAGCACCCCGGCAGG
CTACTCACTCCAATGTCGCCTGATGCCATGATTTCTGGCAACTTCATCGG
AACAAGTATCTTTCGACATTGCTGACGATTGCTGAACCTCCAGTCTCTTT
TTATGGACTGCATTTCGAAGCGCCTTGATCCGTTTGGTACCATCTTCCGT
TCCCGCTCTCCAGGCCTCATCGTAATGGCTCTTTCATCTCGGCCCCTCAA
TCTCGATGGTTGGCTTCTGCTCCTTCATGCCGGTGTGTCCAGGAAGTTCG
GCTCCCAGCCTACATCTCCCTGTGCTCGCTACACAACCGTAGCTCCCAAG
TCCGTTTTTCAGCCTGCGAAAGGTAATTTCCTCAGACCGGCCTACTGAAC
GACTGGTGGCGCTCAGTTTTCAACGTCGTGACAAGTCTCAACGTCTACAA
CGATCGAGAAGGCCATTTTCGCGTGCCCCCGAGAAATTTCTTTGGAACCC
CAGAAATGTTCCCCATTATTTAAGCGAATTTAATTTGCACAGAAGAATAT
CATCGAATATTGGCGGGGACCTTGAATACTCATAAAGCTCATCAGATTTT
GTTGACCATCAATGTTGACGAACGAACTGAGTTAACGAAGCAGAGTTCAA
AGCAGTAGTAGGAAAGATCATTTTGCATCTTGAAGATTCGCATCAATTTC
AGCCATATGATGTGCCAGGGTGTTGCGCGTAGTTCCTTACAAGCGTTGCG
AAGATGATTTGAGGATCCACAATTGTTGCAAGTACGTTCGCGTGTGTAGT
TTCGGGCGGGTCTTCCTGATCTGTCATTGCTGTTATTGTTTGATCGTGGA
TGTGCAGTCGCCTGTTGTGCGTTTCTCCTGAAGCTGTTGTTGTTGGAGAA
TCTGCGATCGCCGTTAATTGCAGGGCGTCTTGTGCCACGTCGTCCATTGT
AGTCATCACGAGCGGGTGCAGCAGAAGCAGATGGGTAGAGACCATGAGCA
GTTAGTAGTGCTTGGGTATTGTTGAGCCTCTCATCCAGATGATCAGCTGA
GGAGTTCAGTTGAAAATCACGTTTAAGATCAGCTGTTGAATGATATACTG
TGGCGTGCAACGTAAGCTGCCATCTGCGTTACGAAGTTGAAAAACTAACT
CTCTCTTCATTGCTGTTACGATAGCGTGATATAGTGTCATTTGTCTCTCG
ATGTGATACCCCACTCAAAAGTACACCGGATACCGCAGAATCAAGCATCG
CAGCTCCTTCTTTGTTGCCAACTTTGAGGGCATTACTTAGCACTTTCATG
CTAAAAGCTCTTACCGACGGGAAGTTTACCAATTTCAGCATATGGAAGGT
TTGCCTAAGATCTACTAGAGATGATGTATCAGTCGATAAAAGCCATTAAA
TGTAATCTTGGCCCAGATAACTGAAGGCTCGTCTGTATCATTAAGTAAAG
ACCGTACCACTCACGGCGGGGCTCAATAGTATGATATAACCAGTCCGATG
AATTTCTGCCTCTTCTCTTGATATAGCTCCTAACTTCAGCAGCGTTAGTT
GCAATCTGAGCTCTTGTGTTGGATGCTTGATCTTCTCAAATCTGGGGAGG
CACATACTTTGGATCGGTGAGAAGAAATAACTCGTGAACCCTGAGAGCTG
CTGCAAGGTTCAAAAGCGTCTGATCTGGATCGTCGATGTGAGCTACTTCT
CTTGTGGAGAAGATATATCGAATTTCGTCAGTTGGCTAGGAGAGTAAATC
ATTTTACAATGTGCGAAGATTGGAGGTAAAATGAGCAGCTGTCCCGGTGA
CCCCTAAGTCTGAATCATGGGCCCATAACCTGTTATGGCAGAGTAGTGGC
AAAGTGCAGAGCTTTCAGAACAGAGTGTATCACCTAACTTAGCAAGTTAG
TGGATTGTGGGTGAGAGATAATTTAGGGTTGAGTATTTTCTTTTTATATT
TCAGATGATGATGGTGGTAATTGTTGGGTCGATCTCAATGATGAAGTGCG
AGTTCAGAAAGAAACAAAATAAACAGTCTCAATTTTCCCTTCAGCAGCAG
AAGTCTTCTTTTCGATAGAGGCAACAGAGTAGAACTCCAGTAAAGATGTA
AAACCTTTTTTTGACATTATTCTTCTGTAATCAGAGGCGCAAGTCAAATC
TTGGTTCTTTTTTGCTTTGTTGACTTCAGAAGTATTTCACCGTAGAAGAA
TTAATTATTGCTTCTCAGAAGCCATTAGTCTTTATCGAACAATACCAAAT
GATTATTCTGTCGAGCTACATATTATGATTATACTATTGTCGAGAATAAT
TCACTCCAAGCTAATGTTGAGATAATCTGCACAGAAGAATATCATCGAAT
ATATTGGCGGGAACCTTGAATAATCATAAAGCTCATCAGATTTTGTCCAT
CAATGTTAACGAACGAACTGAGTTAACGAACTAGAGTTAAAAGCAGTAGT
AGGAAAGATCATTTTGAAATAAGCTCATGAGACCACTGTCGTAACATATT
ATGCTTGTATCTATTCAATACTTCCTGACGTACATAAGACATTATTTGTG
TTGTCCCAGCATCATCATCATTCTTCTTCTTCTTTCTTCTTCTCCTTTGT
TCATCATCATCATCATTCTTCTTCTTCTTCTTCACCTCGTGTTCATCATT
TGTGTTGTTCATTAATCATTACCACACATCATGGCTTCTTTAGTAAGCCC
CATCTTAGACATCTTCATAGTAGTTCACTACTTGCTTGTCAAGACATGGT
TCTCTCTGGTTCTCAAGACCAGGAAGGTAATCAGCTAATGCTGACTTACC
TCTCTGTTGGTTATGGGCAATTCGCGCATGCTCTTCTGTCCCTTTGGTTC
ATTCTGCTAGCCATTCCTTCGTGGGTCTTGCCGGCGCTACTACCCCCTTT
TCTGGGTGGAGGCGCCATTGCGATTGTCGCGGCGACCACATCTGTTCTGC
TAGGATCCTCTTCTTCTATGGCCGCCATTGATTCTTCCGCGTGTTACTTG
GACACTGGTTGTACGTCTATTATGACTAACAACTCGGCCCTCCTTTTTGG
GGCCGTACAGTCTCAAGTCCCGATCACTACTGGAAACTCTGGTGCCATGA
CATCTGCCTCGTTCCAAGGGACAGCGCGTTTTAGGTCGCCTATCACGCGT
CGTCCTTTTGCCTTCGATCAATCTCTGTATTGTGAACAGCTCCCGTGCAC
TCTGGTGCCGTTGACTGTCATGCGCAGGGTTGGTTTGAAGTCTGTCCTGG
ATGAAGATTCTCTGGCCTTTCGGTTCTACTACCGTCATGAGCTACAGTTC
TCGGCAGCTGTCGATGAAACTGGTCTTTATCGCTTGGACTGGGACCTCTC
TCTTAATCCTGATCCTATTCAGCCCTCTAGTTCTCCTTCCGATACCCCGT
CTGACTCTTTCGATCCTTCGTCTTTCTCCGCTGGTGATGCTCCCAGCTAT
TCTGAATCTGCCTTAGTGGCTGATGCCCGTGTTGACAATACGATGTCTCT
CTGGCATCATCGCCTTTCCCATGCATCTGAACGTCTAATCCGTCAAATGG
CCGCTGATGGTGTCATTCCCCGCCATCTCATCAATTTGGACGACAAACTT
CCCTTCTGTTCTTCCTGCTGTGAAATGAACATGACAAAAAGAGGTCCAGT
CCCGAACGGGGCTCCCCGTAATGATTCGGACTCTCCAGTTGTCTCCCGTA
TTTTGCAGGAGGTCTCCGTCGATGTTTCTGGTCCCTTTCCGAAAGATCGC
TCTGGAAATCGTTGGTTTGTTCTTTTCGTGGACAAAAAATCACGGTTTCG
CTCGATCGGTCTCATGAAAAATAAAAACGACACGTTTCAGCACTTTCTCT
CCTTCTGCCAAGCCGCCACCAAGTCCCACCCCGACATCTCTGTCGATGAC
GTTGCTACCATTCGTATGGATGGTGGTGATACcgGGGGCGAATTTTCTgG
AATTCGGGATTTTGCTGCGCAGCACGGATTAATTCTGCCCACGGGCAGAT
CAAATCCCAATGGCAACTCGTTAGCCGAGACCTCTATTAAAGTCGTATGT
CAGAGAATGCGTGCTTCTTTGCACTCGAGCAATCTCTCGGCGTCTTATTG
GTCTGAAGCACTGCTTCATTCGGTGGAAACGACCAATCGGCTTCCGACAG
CGGGACTACCCAATCACATTTCTCCTTATCAGGCTTGGTATGGTCACCAG
CCCTCGATCCGCCATCTTCGAACTTTTGGTACTTCGTGCTTCGCCTATCT
CCCTGTCGAGAGGCGTCCTGGCAAACTCTCTCCTAAGGGAGTTCTTCATA
AGTTTCTGTCCTATGGCTCCAGTACAGGAGTATATCGTCTTCTGTCTCCT
AAGAATAGGGTCGTCCTCACCAAGTTTGTCATTTTTGATGAAACATCATC
AGTCATTTCAACAATTTCTCTTTCTGATGACGACACTTCCAATCAACAGT
CTGAACTTTCCTCTTCTGACACTGGCATTTCAAATTCATCGTCCACTTCT
GACGACGTTTTGCCTCAGCCGCAGCAGCCGTCATCCAATTCTCAGTCTTC
GTCATCCAATTCTGTTGACCAATCGGATTCTGTTTCTGGTGCTTCTTCGT
CCTCCACTGCGGGTTCGTCAGCGAATTTGCAGTCGTCAGTGAATCCATCC
GTCCCTTCTGCTCCATCAACCAAAAATCTTCTGCCCTCCGGTGGTGGTGC
ATTTCATCATCGTCGTGCAAGAAGGTCTCGCACTTTTCGCACTGCAACCC
CGGCTCGTAGGCTTCGTAGAGGAACCAGGACTAGGCAACCCGTCTCCGTT
GGTGAGCTCCAGAATATGAGCAATGCGTTCGCGTTTTTGGGCACCCATGG
TGATTCCTCCGACAGGCTGCCCGCCGGCCCTGCTGAAGCTCGTGGTCTTC
CTGACTGGCTGGAGTGGGAAGGGGCCATTGAGGGAGAACTCGACAGTATC
GCTGAGAAAGGCACCTACACGCTAGTGGATCTGCCGCCTGACGCAAATGT
TATTGGAACCCGTTGCGTGCTCTCAAAAAAATTTGACGCCGATGGCCATC
TTGTCAAACACAAGGCTCGTTTGGTCGCTAAAGGCTACACTCAGCAGTAT
GGCCTTGATTATCAGCAGACTTTCTCACCCGTTGTGAATGCAGCTAGCCT
TAGGTTGCTTCTTGCTATCTCAGCGAATAAAGGCTATGCCGTCGACTCTC
TTGATATTAGCACAGCCTTTCTGAATGGAGCTATCACCGACAACGTATTA
ACGCGTCGCCAGCCACCGGGCTATGTTGATCCTCAGCATCCCAACAAGGT
TTGGAAGCTGAATAAGGCTTTGTACGGCCTTAAACAAAGCCCAAGAGTCT
GGTATATGGAGCTGCACGATCATCTTGTGTCACTGGGGTTCACGCGTAGT
GGACATGAGTCTTGCCTTTATATTCATCGTGATGGGGGCAATGAGCTGAT
GGTTGCGGTTTACGTCGATGATTTGGTGATCAGTGGCAGCTCTCAAGCTA
TCGTCTCTGAGTTTAAGCAGTCTCTCGCATCCAAGTACAATCTCACCGAT
CAAGGGGAACTCACCCAAATCCTTGGCATCAAGGTTGTTCGCGATAAGCG
GAACAGGTGTTTTCATCTTTCCCAGACCTCTTTCATCAAGGACGCAATGG
CCAAGTTCGGGCTCGATTATCTTCCTGCGTGCAGAACACCTATTGATCAC
ACTGTGGATCTCACACCTACACCCGGGTTTAAGGCGGAACTCTCCGATGC
GAACTTGTACAGGTCTATGGTTGGAACGCTGGCCTGGGTTGCGAACTGGA
CGAGACCAGAGCTTGCTTTTGCAGTCCACAAGCTTCAGCGTACTCAAATT
AATCCGGAGCCCAAGTATTTTGAGGCGGTCCAGCGTGCATTTCGGTACCT
CAAGGGCACTCAGTCTGAATCCCTGCGGCTGGGTGGTGATCTGGTGCTGC
GAGCTTATTCTGATGCGGATTTCTGTAATGACCGTGTTGATGGGAAGTCG
GTTACCGGCTATATTCTCTTTTTGGGTGATGCACCTATTGTATGGTCTTC
AAAGCTTCAGGGTGCTGTCACTACCTCTACTGTGGAAGCTGAGTATATGG
CTCTCCGTTCAGCGGTTAAGGACATCATGTGGCTTCGCTCTCTTCTTGCT
GAAATGGGGTGTCCTCAGCATGAACCCACTCCTGTTGTGGAAGACAACAG
TGCCTGTGTTGAGTGGGCCAATGACATGTTGGTTAATAAAAGGAATAGAC
ATTTCCATGTGTCTTATCATCTTGCTAAGGAGCAAGTAAGCCTTGGCACT
ATCAGGATGTTTTTCATTAAAACTCATGATCAAGTGGCTGATATTCTGAC
CAAGGCCCTAAATGCAGCTAATTTTGAGAGGCACCAGAAGGTGCTGCATC
ATGGTTTCAGTGGCTGATGATGCTGGTCAGGGGGGAGCATTATTTGTGTT
GTCCCAGCATCATCATCATTCTTCTTCTTCTTTCTTCTTCTCCTTTGTTC
ATCATCATCATCATTCTTCTTCTTCTTCACCTCGTGTTCATCATTTGTGT
TGTTCATTAATCATTACCACACATCATGGCTTCTTTAGTAAGCCCCATCT
TAGACATCTTCATAGTAGTTCACTACTTGCTTGTCAAGACATGGTTCTCT
CTGGTTCTCAAGACCAGGAAGGTAACTCAGCTAATGCTGACTTACCTCTC
TGTTGTAAGATAGGATGACAATGATGTTTTTTAGTTTATTTATATAAGGT
CTTATGTTTGGATATTAACTGTAACAAAGGCAGAAGCCTGGATCCCCACA
AAGTGGCCCTTTCTTCCATTTCTGGCTACTAGTACCTTTCTTTTTCACCA
AGGTAACATTTGTATTCAATCTTTTTTTTTGTATTTTTCTTCTACCTTCT
CGGACTTAATAGTCTTGACAGGCATGTTTTTTCCTAACTTCAGGCCTTTC
ACTCATCTCTCATCACCAACAACCACCATGATGATGATGATGATGTTCAT
TTTATTTTCAAGTCTTGCCTTTCAACAACCACCATGTATATATCTTAATT
AAGTTTTATTGAATAGAAAATGGCCTACACTACAGCTCCAGCACATTGTA
TCATATATGCATATTATACTAGTTTGACGGACTCCCCCCTGTATCAGTGC
ATCTGCAACGGCCTGCTGGGCTTACTGGGAATGAAACTACACCTCCCAAT
ACTTTGGGGGGCAGCATGCCCGTTGTCAAAAGACAGTGTGTATAAGTCCC
AGGTAGAAGGAAAAGAAGTATATATATGCCTGAATCCGATGTCTTGTCAG
AAACGAACCAACCTGCAATAATGTACGCCCCAACTTATAATAAGAAAAAA
ATATAATAATAATGATAAGATGGTGATCAAAAAATAAGTTGTTGCGATGA
AGTTATTTTTTATAAAACCATCGACCGCCTTCCCCCAGCCGCGAGGTGGG
CCAGGGGTGGCCGTCCTCGGCGGCGGCGACCGCGCGCGCGC
back to top

Coding sequence (CDS) from alignment at H-akashiwo_Contig1:10702261..10710451+

>mRNA_H-akashiwo_Contig1.262.1 ID=mRNA_H-akashiwo_Contig1.262.1|Name=mRNA_H-akashiwo_Contig1.262.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=177bp|location=Sequence derived from alignment at H-akashiwo_Contig1:10702261..10710451+ (Heterosigma akashiwo CCMP452)
AGGTATGTGCCTTTGACGTTTGTGGTGGCTCAGACAGACCATACATCAGA
AAAAAGAGTAAGACATCACTATGAAAAAAGGCCTGAAAAACTGGCTGGGT
CATCTTTTGTTTATATTCCTCGCAGCCGCGAGGTGGGCCAGGGGTGGCCG
TCCTCGGCGGCGGCGACCGCGCGCGCG
back to top