mRNA_H-akashiwo_Contig1.261.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1.261.1
Unique NamemRNA_H-akashiwo_Contig1.261.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1.261.1 vs. uniprot
Match: K0S767_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0S767_THAOC)

HSP 1 Score: 63.9 bits (154), Expect = 9.060e-11
Identity = 29/48 (60.42%), Postives = 40/48 (83.33%), Query Frame = 1
Query:   52 NKKKARDVHSTVKTMVVLGSGGHTSEMLRLIEKLDETRYVPLTFVVAQ 195
            ++K  + V + +KTMVVLGSGGHT+EM+RL+E+LD TRY PL +VVA+
Sbjct:   92 DEKCVQPVKTALKTMVVLGSGGHTTEMIRLVEQLDPTRYSPLVYVVAE 139          
BLAST of mRNA_H-akashiwo_Contig1.261.1 vs. uniprot
Match: A0A1V9ZYE9_9STRA (40S ribosomal protein S19-3 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZYE9_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 1.710e-10
Identity = 33/60 (55.00%), Postives = 42/60 (70.00%), Query Frame = 1
Query:   19 LPFRTTGIRLVNKKKARDVHSTVKTMVVLGSGGHTSEMLRLIEKLDETRYVPLTFVVAQT 198
            LP R  G     K     VH+T +T+VVLGSGGHT+EML+LI++L+  +YVPL FVVA T
Sbjct:  163 LPARVNG--RATKASNASVHTTYRTLVVLGSGGHTTEMLKLIKQLNVDKYVPLAFVVAAT 220          
BLAST of mRNA_H-akashiwo_Contig1.261.1 vs. uniprot
Match: A0A250WTN2_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250WTN2_9CHLO)

HSP 1 Score: 62.8 bits (151), Expect = 3.810e-10
Identity = 29/51 (56.86%), Postives = 39/51 (76.47%), Query Frame = 1
Query:   46 LVNKKKARDVHSTVKTMVVLGSGGHTSEMLRLIEKLDETRYVPLTFVVAQT 198
            L+   K  +   +VKT+VVLGSGGHT+EM+RL+E LD+TRY P  +VVA+T
Sbjct:   52 LLKFSKKLEKPDSVKTLVVLGSGGHTAEMMRLVESLDKTRYTPRAYVVAET 102          
BLAST of mRNA_H-akashiwo_Contig1.261.1 vs. uniprot
Match: A0A3M6VIM2_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VIM2_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 1.060e-9
Identity = 28/50 (56.00%), Postives = 38/50 (76.00%), Query Frame = 1
Query:   49 VNKKKARDVHSTVKTMVVLGSGGHTSEMLRLIEKLDETRYVPLTFVVAQT 198
            +N KK +D    V+ M VLGSGGHT+E+L+LI++L+   Y P+TFVVAQT
Sbjct:   49 LNSKKNKDKRYQVRVMAVLGSGGHTTELLKLIKRLNREVYTPITFVVAQT 98          
BLAST of mRNA_H-akashiwo_Contig1.261.1 vs. uniprot
Match: A0A7S0RKA0_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0RKA0_9CHLO)

HSP 1 Score: 61.2 bits (147), Expect = 1.360e-9
Identity = 28/47 (59.57%), Postives = 35/47 (74.47%), Query Frame = 1
Query:   58 KKARDVHSTVKTMVVLGSGGHTSEMLRLIEKLDETRYVPLTFVVAQT 198
            K  RD    +KT+VVLGSGGHT+EML+++EKLD  RY P T+V A T
Sbjct:   63 KPKRDPKKPLKTLVVLGSGGHTAEMLKVVEKLDRQRYTPRTYVAATT 109          
BLAST of mRNA_H-akashiwo_Contig1.261.1 vs. uniprot
Match: A0A1V9YB24_9STRA (UDP-N-acetylglucosamine transferase subunit ALG14 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YB24_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 1.780e-9
Identity = 35/66 (53.03%), Postives = 43/66 (65.15%), Query Frame = 1
Query:    1 VRFAIALPFRTTGIRLVNKKKARDVHSTVKTMVVLGSGGHTSEMLRLIEKLDETRYVPLTFVVAQT 198
            VRF   LP R  G  L  K    D   + +T+VVLGSGGHT+EML+LI++L  +RY PL FVVA T
Sbjct:   17 VRFWCILPARIRGT-LPRKTTPSD---SFRTLVVLGSGGHTTEMLKLIKRLQRSRYTPLAFVVAAT 78          
BLAST of mRNA_H-akashiwo_Contig1.261.1 vs. uniprot
Match: A0A067C002_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067C002_SAPPC)

HSP 1 Score: 58.2 bits (139), Expect = 1.350e-8
Identity = 27/40 (67.50%), Postives = 33/40 (82.50%), Query Frame = 1
Query:   79 STVKTMVVLGSGGHTSEMLRLIEKLDETRYVPLTFVVAQT 198
            ST +T+VVLGSGGHT+EML LI++L  TRY PL +VVA T
Sbjct:   41 STFRTLVVLGSGGHTTEMLALIKRLSPTRYAPLAYVVAAT 80          
BLAST of mRNA_H-akashiwo_Contig1.261.1 vs. uniprot
Match: UPI0002658EB2 (UDP-N-acetylglucosamine transferase subunit ALG14 homolog n=1 Tax=Galendromus occidentalis TaxID=34638 RepID=UPI0002658EB2)

HSP 1 Score: 58.2 bits (139), Expect = 1.720e-8
Identity = 30/55 (54.55%), Postives = 36/55 (65.45%), Query Frame = 1
Query:   34 TGIRLVNKKKARDVHSTVKTMVVLGSGGHTSEMLRLIEKLDETRYVPLTFVVAQT 198
            T +RL N K  R+V    K M+VLGSGGHTSEMLRLIE + +  Y P  +V A T
Sbjct:   51 TFMRLTNTKFKRNVKKPCKAMIVLGSGGHTSEMLRLIEGVSKLLYTPRIYVHADT 105          
BLAST of mRNA_H-akashiwo_Contig1.261.1 vs. uniprot
Match: UPI0009952A50 (UDP-N-acetylglucosamine transferase subunit ALG14 homolog n=1 Tax=Pseudomyrmex gracilis TaxID=219809 RepID=UPI0009952A50)

HSP 1 Score: 57.8 bits (138), Expect = 1.760e-8
Identity = 25/50 (50.00%), Postives = 38/50 (76.00%), Query Frame = 1
Query:   49 VNKKKARDVHSTVKTMVVLGSGGHTSEMLRLIEKLDETRYVPLTFVVAQT 198
            + + K R+  S+VKTM++LGSGGHT+EMLR++++L+   Y P  +V AQT
Sbjct:   28 MKRHKPREKSSSVKTMIILGSGGHTAEMLRIVQRLNVKNYSPRVYVHAQT 77          
BLAST of mRNA_H-akashiwo_Contig1.261.1 vs. uniprot
Match: A0A6G0XIK9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XIK9_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 1.880e-8
Identity = 26/39 (66.67%), Postives = 33/39 (84.62%), Query Frame = 1
Query:   82 TVKTMVVLGSGGHTSEMLRLIEKLDETRYVPLTFVVAQT 198
            +V+T+VVLGSGGHT+EML+LI++L  TRY P  FVVA T
Sbjct:   42 SVRTLVVLGSGGHTTEMLKLIKRLSTTRYTPFAFVVAAT 80          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1.261.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
K0S767_THAOC9.060e-1160.42Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A1V9ZYE9_9STRA1.710e-1055.0040S ribosomal protein S19-3 n=1 Tax=Thraustotheca ... [more]
A0A250WTN2_9CHLO3.810e-1056.86Uncharacterized protein n=1 Tax=Chlamydomonas eust... [more]
A0A3M6VIM2_9STRA1.060e-956.00Uncharacterized protein n=1 Tax=Peronospora effusa... [more]
A0A7S0RKA0_9CHLO1.360e-959.57Hypothetical protein n=1 Tax=Chlamydomonas leiostr... [more]
A0A1V9YB24_9STRA1.780e-953.03UDP-N-acetylglucosamine transferase subunit ALG14 ... [more]
A0A067C002_SAPPC1.350e-867.50Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
UPI0002658EB21.720e-854.55UDP-N-acetylglucosamine transferase subunit ALG14 ... [more]
UPI0009952A501.760e-850.00UDP-N-acetylglucosamine transferase subunit ALG14 ... [more]
A0A6G0XIK9_9STRA1.880e-866.67Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1contigH-akashiwo_Contig1:10701580..10702298 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog36331.EPrPI00000015298
PFAMsAlg14
Model size200
Max annot lvl121069|Pythiales
Hectar predicted targeting categorymitochondrion
Exons3
Evalue2.1e-09
EggNOG OGsKOG3339@1|root,KOG3339@2759|Eukaryota,1MB9N@121069|Pythiales
DescriptionUDP-N-acetylglucosamine transferase subunit ALG14. Source PGD
Cds size198
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387040.0243232-CDS-H-akashiwo_Contig1:10701579..107016431681387040.0243232-CDS-H-akashiwo_Contig1:10701579..10701643Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1 10701580..10701643 +
1681387040.033811-CDS-H-akashiwo_Contig1:10701773..107018731681387040.033811-CDS-H-akashiwo_Contig1:10701773..10701873Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1 10701774..10701873 +
1681387040.043114-CDS-H-akashiwo_Contig1:10702262..107022961681387040.043114-CDS-H-akashiwo_Contig1:10702262..10702296Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1 10702263..10702296 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1.261.1prot_H-akashiwo_Contig1.261.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1 10701580..10702296 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1.261.1

>prot_H-akashiwo_Contig1.261.1 ID=prot_H-akashiwo_Contig1.261.1|Name=mRNA_H-akashiwo_Contig1.261.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=66bp
VRFAIALPFRTTGIRLVNKKKARDVHSTVKTMVVLGSGGHTSEMLRLIEK
LDETRYVPLTFVVAQT
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mRNA from alignment at H-akashiwo_Contig1:10701580..10702298+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1.261.1 ID=mRNA_H-akashiwo_Contig1.261.1|Name=mRNA_H-akashiwo_Contig1.261.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=719bp|location=Sequence derived from alignment at H-akashiwo_Contig1:10701580..10702298+ (Heterosigma akashiwo CCMP452)
GTCCGCTTCGCTATAGCGCTTCCTTTTCGGACAACAGGAATTCGCTTGGT CAATAAAAAAAAGGGTAAGAAAGAACGTAAACACACTGTGAATATGGTAT TTGGACTTCAGTGCTCCAAACAACTCCACCGCTCTTTTGTTTTCCATTTC TTCGAATGAATTTCTGTGAATAAATTTTATTCCTTTGTTTGCAGCCCGTG ACGTACACAGTACTGTGAAAACAATGGTGGTTCTTGGGTCAGGAGGGCAC ACATCAGAAATGCTGCGGCTGATCGAAAAATTGGATGAAACAAGGCAAGA GTCTTCATAATTTCCTGTACATTTCTGATTACTGCGGTTGTGCTTTTCTT ACTTTTACTGTTTTTTTTTGTTTTATTCGAACCGATGAAGCATGCCTCAT GATACTTGCATTTTTGTGCGCCTGCTGGTGAAGTGCACAATTGAAGAAAC GGCGGCGTGTAGCTGTTTGGGCAGAAAGTAGTGAATATAGTGCCCCCTTT TGATTACTTTGTTATGGATTTTCAATAAATAATTGTTGTAAGCACATTCA TTGCAACACGCTGCTAATCTACCAGTATCAGTATCAGTTTTATGTACTGT GGTGTGCATGTGGTGTGTGTGTTTTCAAGTATACTTCATCGTATTGTATA TATATTGAGTTGGTGATCCATCGCCTTTCTCAGGTATGTGCCTTTGACGT TTGTGGTGGCTCAGACAGA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1:10701580..10702298+

>mRNA_H-akashiwo_Contig1.261.1 ID=mRNA_H-akashiwo_Contig1.261.1|Name=mRNA_H-akashiwo_Contig1.261.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=198bp|location=Sequence derived from alignment at H-akashiwo_Contig1:10701580..10702298+ (Heterosigma akashiwo CCMP452)
GTCCGCTTCGCTATAGCGCTTCCTTTTCGGACAACAGGAATTCGCTTGGT
CAATAAAAAAAAGGCCCGTGACGTACACAGTACTGTGAAAACAATGGTGG
TTCTTGGGTCAGGAGGGCACACATCAGAAATGCTGCGGCTGATCGAAAAA
TTGGATGAAACAAGGTATGTGCCTTTGACGTTTGTGGTGGCTCAGACA
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