mRNA_H-akashiwo_Contig1.256.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1.256.1
Unique NamemRNA_H-akashiwo_Contig1.256.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1.256.1 vs. uniprot
Match: A0A6V1NIL0_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NIL0_HETAK)

HSP 1 Score: 354 bits (908), Expect = 1.080e-119
Identity = 181/181 (100.00%), Postives = 181/181 (100.00%), Query Frame = 2 
Query:  164 MADVEKKEAPPGEVKESQGVENREKQVSKMAAEMTGIPDGKAPSKQGSKEGIRSPQARQMEAAQYKPLIIEVKNNPCMCCPAKCGCTKECIIPIGCGNTFEDLVIIFSLLGTLWCGLLGFYTLLLKAQIDSTEHSTVLWIYFFSGIIFVIMVGGSVYTGQIERARSEKKAAEEAEEAKDSA 706
            MADVEKKEAPPGEVKESQGVENREKQVSKMAAEMTGIPDGKAPSKQGSKEGIRSPQARQMEAAQYKPLIIEVKNNPCMCCPAKCGCTKECIIPIGCGNTFEDLVIIFSLLGTLWCGLLGFYTLLLKAQIDSTEHSTVLWIYFFSGIIFVIMVGGSVYTGQIERARSEKKAAEEAEEAKDSA
Sbjct:    1 MADVEKKEAPPGEVKESQGVENREKQVSKMAAEMTGIPDGKAPSKQGSKEGIRSPQARQMEAAQYKPLIIEVKNNPCMCCPAKCGCTKECIIPIGCGNTFEDLVIIFSLLGTLWCGLLGFYTLLLKAQIDSTEHSTVLWIYFFSGIIFVIMVGGSVYTGQIERARSEKKAAEEAEEAKDSA 181
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BLAST of mRNA_H-akashiwo_Contig1.256.1 vs. uniprot
Match: A0A6V1PWD1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1PWD1_HETAK)

HSP 1 Score: 261 bits (666), Expect = 5.160e-83
Identity = 132/138 (95.65%), Postives = 133/138 (96.38%), Query Frame = 2 
Query:  164 MADVEKKEAPPGEVKESQGVENREKQVSKMAAEMTGIPDGKAPSKQGSKEGIRSPQARQMEAAQYKPLIIEVKNNPCMCCPAKCGCTKECIIPIGCGNTFEDLVIIFSLLGTLWCGLLGFYTLLLKAQIDSTEHSTVL 577
            MADVEKKEAPPGEVKESQGVENREKQVSKMAAEMTGIPDGKAPSKQGSKEGIRSPQARQMEAAQYKPLIIEVKNNPCMCCPAKCGCTKECIIPIGCGNTFEDLVIIFSLLGTLWCGLLGFYTLLLKAQI S    T+L
Sbjct:    1 MADVEKKEAPPGEVKESQGVENREKQVSKMAAEMTGIPDGKAPSKQGSKEGIRSPQARQMEAAQYKPLIIEVKNNPCMCCPAKCGCTKECIIPIGCGNTFEDLVIIFSLLGTLWCGLLGFYTLLLKAQIVSVFPFTIL 138
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BLAST of mRNA_H-akashiwo_Contig1.256.1 vs. uniprot
Match: A0A8J2SJJ8_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SJJ8_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 3.770e-12
Identity = 47/121 (38.84%), Postives = 65/121 (53.72%), Query Frame = 2 
Query:  317 IRSPQARQMEAAQYKPLIIEVKNNPCMCCPAKCGCTK----ECIIPIGCGNTFEDLVIIFSLLGTLWCGLLGFYTLLLKAQIDSTEHSTVLWIYFFSGIIFVIMVGGSVYTGQIERARSEK 667
            +  P+ R  +  Q +P  ++  N      P KC   +    +C   I C  + EDL II SL   LW  LLG YTLLLKA +D+ E  T LWI+F  G++F + V G+V   Q+E A +EK
Sbjct:   12 LEKPRVR--DERQSRPSTLKEMNAQRGYSPYKCIYNRSDGTQCEWNIACYLSCEDLGIICSLFIVLWACLLGIYTLLLKAALDTDEKDTALWIFFAFGVLFTMFVAGAVGMNQVEEALNEK 130
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BLAST of mRNA_H-akashiwo_Contig1.256.1 vs. uniprot
Match: D8LRE0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRE0_ECTSI)

HSP 1 Score: 73.6 bits (179), Expect = 8.280e-12
Identity = 37/79 (46.84%), Postives = 53/79 (67.09%), Query Frame = 2 
Query:  443 IGCGNTFEDLVIIFSLLGTLWCGLLGFYTLLLKAQIDSTEHSTVLWIYFFSGIIFVIMVGGSVYTGQIERARSEKKAAE 679
            IGCGN+ ED+++I   +  LW  +LG   LLLK+ ID+    T LW+YF+  I+   ++GG + TGQ+ER RSE+ AAE
Sbjct:   80 IGCGNSLEDVLLIMGCILALWSFVLGVSGLLLKSAIDTDLRHTALWVYFWLFILGCFLLGGMIATGQVERFRSERAAAE 158
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BLAST of mRNA_H-akashiwo_Contig1.256.1 vs. uniprot
Match: F0Y0A6_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y0A6_AURAN)

HSP 1 Score: 72.4 bits (176), Expect = 4.430e-10
Identity = 41/77 (53.25%), Postives = 50/77 (64.94%), Query Frame = 2 
Query:  437 IPIGCGNTFEDLVIIFSLLGTLWCGLLGFYTLLLKAQIDSTEHSTVLWIYFFSGIIFVIMVGGSVYTGQIERARSEK 667
            I +GC  + EDL II SL   LW  LLG YTLLLKA +D+ E ST LWI+F  G+IF + V GSV   ++E A  EK
Sbjct:  430 INLGCFLSCEDLGIIGSLFIVLWMCLLGIYTLLLKAALDTDEKSTALWIFFAFGVIFTLFVTGSVGMNRVETALKEK 506
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1.256.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6V1NIL0_HETAK1.080e-119100.00Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A6V1PWD1_HETAK5.160e-8395.65Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A8J2SJJ8_9STRA3.770e-1238.84Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
D8LRE0_ECTSI8.280e-1246.84Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
F0Y0A6_AURAN4.430e-1053.25Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1contigH-akashiwo_Contig1:10232258..10234768 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1227
Hectar predicted targeting categoryother localisation
Exons6
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-06_002890.1
Cds size546
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1.256.1prot_H-akashiwo_Contig1.256.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1 10232421..10234250 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387039.7479744-UTR-H-akashiwo_Contig1:10232257..102324201681387039.7479744-UTR-H-akashiwo_Contig1:10232257..10232420Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1 10232258..10232420 +
1681387039.8152785-UTR-H-akashiwo_Contig1:10234250..102347681681387039.8152785-UTR-H-akashiwo_Contig1:10234250..10234768Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1 10234251..10234768 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387039.7581778-CDS-H-akashiwo_Contig1:10232420..102325811681387039.7581778-CDS-H-akashiwo_Contig1:10232420..10232581Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1 10232421..10232581 +
1681387039.767788-CDS-H-akashiwo_Contig1:10232719..102327821681387039.767788-CDS-H-akashiwo_Contig1:10232719..10232782Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1 10232720..10232782 +
1681387039.7772138-CDS-H-akashiwo_Contig1:10232913..102329991681387039.7772138-CDS-H-akashiwo_Contig1:10232913..10232999Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1 10232914..10232999 +
1681387039.7866116-CDS-H-akashiwo_Contig1:10233134..102332111681387039.7866116-CDS-H-akashiwo_Contig1:10233134..10233211Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1 10233135..10233211 +
1681387039.795965-CDS-H-akashiwo_Contig1:10233573..102336981681387039.795965-CDS-H-akashiwo_Contig1:10233573..10233698Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1 10233574..10233698 +
1681387039.8055177-CDS-H-akashiwo_Contig1:10234216..102342501681387039.8055177-CDS-H-akashiwo_Contig1:10234216..10234250Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1 10234217..10234250 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1.256.1

>prot_H-akashiwo_Contig1.256.1 ID=prot_H-akashiwo_Contig1.256.1|Name=mRNA_H-akashiwo_Contig1.256.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=182bp
MADVEKKEAPPGEVKESQGVENREKQVSKMAAEMTGIPDGKAPSKQGSKE
GIRSPQARQMEAAQYKPLIIEVKNNPCMCCPAKCGCTKECIIPIGCGNTF
EDLVIIFSLLGTLWCGLLGFYTLLLKAQIDSTEHSTVLWIYFFSGIIFVI
MVGGSVYTGQIERARSEKKAAEEAEEAKDSA*
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mRNA from alignment at H-akashiwo_Contig1:10232258..10234768+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1.256.1 ID=mRNA_H-akashiwo_Contig1.256.1|Name=mRNA_H-akashiwo_Contig1.256.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=2511bp|location=Sequence derived from alignment at H-akashiwo_Contig1:10232258..10234768+ (Heterosigma akashiwo CCMP452)
GGAAAAACCTGTACAAAAAACCAACTGGTCAAACCATCACCACGTCGTCT
GCGTCTGCTGCCGTCTGCCAACCGACTAACCATAATCCGAAGTAGGAACG
CATTGCCTTGCTCCCAGCTTGCTTTCACCCTAACAAAGGCTTTCTCATAT
ATCAAAAGGGAACATGGCTGACGTTGAGAAAAAGGAAGCTCCTCCTGGGG
AGGTGAAGGAGTCCCAGGGTGTGGAGAACAGGGAAAAGCAGGTGTCAAAG
ATGGCGGCTGAAATGACCGGCATTCCGGACGGCAAAGCTCCCTCCAAGCA
GGGCTCCAAGGAGGGGATTAGAAGGTGAAATACTATGACCATGTCTATTT
GTTTAGAGTTTGCGAAAATCGAGGACTTGTACTTCACAACAAGAAGGCAA
TACAATGTCTCTTAAGCATGTAAACCTCTAACTCCTCCCCTTTGAAACGT
GCTCTACTTTAGCCCGCAAGCGAGACAAATGGAAGCTGCCCAGTACAAGC
CTCTTATAATTGAAGTGAAGAACAAGTGAGCCCTCTGAATTAAGCATTTA
CATGCTAGCAAAATGATTTGGTTCTGTTCCGACGAAAACACAAAAATGAA
GTTCTTTGTCACTTATTATTTCTTTGCCCTCATCTTCCTGTTCGCCTCTT
TTACAGTCCTTGCATGTGCTGCCCCGCAAAATGTGGTTGCACAAAAGAGT
GCATCATCCCTATTGGCTGTGGTAACACATTTGAGGATCTTGGTGAGTAG
TTACCACCTTTGAAGCTTTTATCACGAGTACTCTGCTTGCTGATGATAGT
TATCATGATTATGGCTTCATTGCAGCAGGATTCTAGAACTAATTGCTGTA
CTTCTTGAATTTTTACTTTTGAACCAGTGATTATTTTTTCACTTCTGGGC
ACTCTTTGGTGTGGGCTTCTGGGTTTCTACACACTGCTCCTGAAGGCTCA
GATTGTAAGTGTGTTTCCTTTCACAATACTCCTGTCTGGATATGAATGCT
GCAGCATGTTTTGGGTGGTGGTTTGTTTTGTAAGGTTGTGCTCACCAAGT
AACGAAATAATAAATGTGTTTGTACTCCACATTGTTGTAATGAAGAACAG
CTACACGTACATAGCATGCTAACTGCACACTTTGTGCGATTCTTTTGTTC
AAACTCCAAGTCTAATATTGAGAAGCTAACAAGAACATGGCAATCTCATT
GTGGCCCTCCTTTATCCACTTGCACATCGAATTCAGAATAAAACTCCCAA
ACTTTATTCAGGGTTAACACTAACCTTTGAATTTTAACAATTTTATGTCT
TCCAATACCGCAACAGGACTCTACTGAGCATTCGACGGTGCTCTGGATCT
ATTTCTTTTCTGGAATTATTTTTGTTATCATGGTTGGTGGCAGCGTGTAC
ACAGGCCAAATTGAGCGCGCTAGATCTGAGAAGAAAGCAGCGTGAGTGTA
ACTGCCCACCCTTCCTAGATATTACTGCATATTTGACCATGGTTAGCCCA
GGTGGCCCCAATACCTGTACTACTTGTACTTGACTGGCAAAGCATAATTT
TCAGAGATACTGAGGGGGTGGACAACAGTTATGCCACATGAGGTCTAAGG
TGTATCAAATCAAATTCTTTGAGCACCAAGTTACATGCGGGGCGGCTGAT
TTCTGCTGTTCGGTGCTCAGTACCATCAGAACTGTGTGAACGCACAAAAG
CTCTTCATATTAGATGCAATGACGTTGAGTCCAGTGGCTTTCAGTGTCTG
TCCACCACGCCCATGCTGTGCACACCACATTTACATTCACCATTTTGTTT
ACATCTTGCCTCAAAACTGTTGAGCTGAATTTCACCATCACTTTTCCCTC
GCTTATAATTTGTATATGTACCACAACGAATGAAGCCCACTACAGACGTT
GGCATTGACCTAATGCTGTTTTTTTTCTTTTTATGTACTCATCCTTGAAC
CCTTTTCAGTGAGGAGGCTGAGGAAGCAAAGGACAGTGCCTAAGCAAGCC
GGATAGTCTTGCGGTGGAAGCATTTTGTTGTGATTACTGTAGCAAAGGCA
AAAGTCCTGGGAACTTCTAGCGTGGGGGCAGCGGTTGGATAACCGCAGCA
AGAGGTGCTGGGGATATGACTTGAAGCCTTCAGTTCCTCGAACAAGAACG
CCGACGCGTTCGAGCCTTCTTTGCAGTCTCTTCTTATGTTGCTGTTGCTT
TTCAACATCATTGATTCGTAACACACAATCAGGATGATGGGGGGGCGCCA
TTTGTAATAGTAGAAGAGAACACTGAGCACAAGCATTCTGTGCACTAGAA
GACGAAGCATGCCGCTTTTGTCTACGGAGGGGTACCCTTAGATTTCCCAA
TCATGCTGATGGATCTGGCATTTTTCTCTTTGCTTGTTGTTGTTTAGCTT
TTATGTTGTGCGTAAAAAAATAACAACAGACAGTATAATACCATCCCTCA
CGATGTCATGACACAATGTTTGACTACAATTTGTCATTTTGGCTTTTATA
CAATAGTCCAG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1:10232258..10234768+

>mRNA_H-akashiwo_Contig1.256.1 ID=mRNA_H-akashiwo_Contig1.256.1|Name=mRNA_H-akashiwo_Contig1.256.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=546bp|location=Sequence derived from alignment at H-akashiwo_Contig1:10232258..10234768+ (Heterosigma akashiwo CCMP452)
ATGGCTGACGTTGAGAAAAAGGAAGCTCCTCCTGGGGAGGTGAAGGAGTC
CCAGGGTGTGGAGAACAGGGAAAAGCAGGTGTCAAAGATGGCGGCTGAAA
TGACCGGCATTCCGGACGGCAAAGCTCCCTCCAAGCAGGGCTCCAAGGAG
GGGATTAGAAGCCCGCAAGCGAGACAAATGGAAGCTGCCCAGTACAAGCC
TCTTATAATTGAAGTGAAGAACAATCCTTGCATGTGCTGCCCCGCAAAAT
GTGGTTGCACAAAAGAGTGCATCATCCCTATTGGCTGTGGTAACACATTT
GAGGATCTTGTGATTATTTTTTCACTTCTGGGCACTCTTTGGTGTGGGCT
TCTGGGTTTCTACACACTGCTCCTGAAGGCTCAGATTGACTCTACTGAGC
ATTCGACGGTGCTCTGGATCTATTTCTTTTCTGGAATTATTTTTGTTATC
ATGGTTGGTGGCAGCGTGTACACAGGCCAAATTGAGCGCGCTAGATCTGA
GAAGAAAGCAGCTGAGGAGGCTGAGGAAGCAAAGGACAGTGCCTAA
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