mRNA_H-akashiwo_Contig1.255.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1.255.1
Unique NamemRNA_H-akashiwo_Contig1.255.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1.255.1 vs. uniprot
Match: A0A7S2XZP9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZP9_9STRA)

HSP 1 Score: 114 bits (285), Expect = 2.120e-29
Identity = 49/64 (76.56%), Postives = 59/64 (92.19%), Query Frame = 1 
Query:    1 VMTHALEWPSLTVQWLPEIKKPEGKDYSIQKMILGTHTSNAEQNHLMIATVNLPLPDTEIDARK 192
            VMTHALEWPSLTVQWLP++K+PEGK +SI + I+GTHTSN+EQNHLM+A+VNLPLPD E+D RK
Sbjct:   44 VMTHALEWPSLTVQWLPDVKRPEGKTHSIHRFIVGTHTSNSEQNHLMVASVNLPLPDQELDVRK 107
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BLAST of mRNA_H-akashiwo_Contig1.255.1 vs. uniprot
Match: A0A444ECS4_ENSVE (CAF1C_H4-bd domain-containing protein n=1 Tax=Ensete ventricosum TaxID=4639 RepID=A0A444ECS4_ENSVE)

HSP 1 Score: 100 bits (250), Expect = 4.620e-26
Identity = 46/64 (71.88%), Postives = 54/64 (84.38%), Query Frame = 1 
Query:    1 VMTHALEWPSLTVQWLPEIKKPEGKDYSIQKMILGTHTSNAEQNHLMIATVNLPLPDTEIDARK 192
            V+THALEWPSLTVQWLP+  +P GKDYS+QKMILGTHTS+ E N+LM+A V LPL D E DAR+
Sbjct:   35 VITHALEWPSLTVQWLPDRDEPAGKDYSVQKMILGTHTSDNEPNYLMLAQVQLPLEDAEYDARQ 98
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BLAST of mRNA_H-akashiwo_Contig1.255.1 vs. uniprot
Match: A0A427AC41_ENSVE (CAF1C_H4-bd domain-containing protein n=1 Tax=Ensete ventricosum TaxID=4639 RepID=A0A427AC41_ENSVE)

HSP 1 Score: 100 bits (250), Expect = 1.200e-25
Identity = 46/64 (71.88%), Postives = 54/64 (84.38%), Query Frame = 1 
Query:    1 VMTHALEWPSLTVQWLPEIKKPEGKDYSIQKMILGTHTSNAEQNHLMIATVNLPLPDTEIDARK 192
            V+THALEWPSLTVQWLP+  +P GKDYS+QKMILGTHTS+ E N+LM+A V LPL D E DAR+
Sbjct:   35 VITHALEWPSLTVQWLPDRDEPAGKDYSVQKMILGTHTSDNEPNYLMLAQVQLPLEDAEYDARQ 98
[Close]
BLAST of mRNA_H-akashiwo_Contig1.255.1 vs. uniprot
Match: A0A2P4YCE2_9STRA (Histone-binding protein RBBP4 n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YCE2_9STRA)

HSP 1 Score: 101 bits (251), Expect = 2.170e-25
Identity = 46/64 (71.88%), Postives = 52/64 (81.25%), Query Frame = 1 
Query:    1 VMTHALEWPSLTVQWLPEIKKPEGKDYSIQKMILGTHTSNAEQNHLMIATVNLPLPDTEIDARK 192
            VMTHALEWPSL+VQWLP      G D+S+ K++LGTHTS AEQNHLM+A V LPL DTEIDARK
Sbjct:   54 VMTHALEWPSLSVQWLPNSHTSAGDDFSVHKLLLGTHTSGAEQNHLMVAEVRLPLEDTEIDARK 117
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BLAST of mRNA_H-akashiwo_Contig1.255.1 vs. uniprot
Match: A0A1Y1IJY1_KLENI (Nucleosome remodeling factor subunit CAF1/NURF55/MSI1 n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IJY1_KLENI)

HSP 1 Score: 105 bits (261), Expect = 3.290e-25
Identity = 48/64 (75.00%), Postives = 56/64 (87.50%), Query Frame = 1 
Query:    1 VMTHALEWPSLTVQWLPEIKKPEGKDYSIQKMILGTHTSNAEQNHLMIATVNLPLPDTEIDARK 192
            V+THALEWPSLTVQWLP+  +P GKDYS+QK+ILGTHTS+ EQN+LMIA V LPL DTE DAR+
Sbjct:   35 VVTHALEWPSLTVQWLPDRSEPAGKDYSVQKLILGTHTSDNEQNYLMIAEVQLPLEDTETDARQ 98
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BLAST of mRNA_H-akashiwo_Contig1.255.1 vs. uniprot
Match: A0A2Z6ZY67_9LAMI (WD-40 repeat protein n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z6ZY67_9LAMI)

HSP 1 Score: 99.0 bits (245), Expect = 3.320e-25
Identity = 45/63 (71.43%), Postives = 53/63 (84.13%), Query Frame = 1 
Query:    1 VMTHALEWPSLTVQWLPEIKKPEGKDYSIQKMILGTHTSNAEQNHLMIATVNLPLPDTEIDAR 189
            V+THALEWPSLTV+WLP+ ++P GKDYS+QKMILGTHTS  E N+LM+A V LPL D E DAR
Sbjct:   35 VITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLEDAENDAR 97
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BLAST of mRNA_H-akashiwo_Contig1.255.1 vs. uniprot
Match: A0A1X7UZY3_AMPQE (CAF1C_H4-bd domain-containing protein n=2 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7UZY3_AMPQE)

HSP 1 Score: 103 bits (256), Expect = 3.880e-25
Identity = 44/64 (68.75%), Postives = 56/64 (87.50%), Query Frame = 1 
Query:    1 VMTHALEWPSLTVQWLPEIKKPEGKDYSIQKMILGTHTSNAEQNHLMIATVNLPLPDTEIDARK 192
            VMTHALEWPSLTVQWLP I+KPEGKD+++QK++LGTHTS+ EQNH++IA V LP  D ++DA +
Sbjct:   39 VMTHALEWPSLTVQWLPSIQKPEGKDFTVQKLLLGTHTSSDEQNHVVIANVKLPNEDAQVDASR 102
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BLAST of mRNA_H-akashiwo_Contig1.255.1 vs. uniprot
Match: A0A7S0DA23_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0DA23_MICPS)

HSP 1 Score: 104 bits (260), Expect = 4.130e-25
Identity = 47/64 (73.44%), Postives = 55/64 (85.94%), Query Frame = 1 
Query:    1 VMTHALEWPSLTVQWLPEIKKPEGKDYSIQKMILGTHTSNAEQNHLMIATVNLPLPDTEIDARK 192
            V+THALEWPSLTV+WLP+  +P GKDYS+QK+ILGTHTS  EQNHLMIA V LPL D E+DAR+
Sbjct:   35 VVTHALEWPSLTVEWLPDRVEPPGKDYSVQKLILGTHTSENEQNHLMIAEVQLPLEDAEVDARQ 98
[Close]
BLAST of mRNA_H-akashiwo_Contig1.255.1 vs. uniprot
Match: A0A835EFM8_9POAL (CAF1C_H4-bd domain-containing protein n=2 Tax=Panicoideae TaxID=147369 RepID=A0A835EFM8_9POAL)

HSP 1 Score: 98.6 bits (244), Expect = 5.110e-25
Identity = 45/63 (71.43%), Postives = 53/63 (84.13%), Query Frame = 1 
Query:    1 VMTHALEWPSLTVQWLPEIKKPEGKDYSIQKMILGTHTSNAEQNHLMIATVNLPLPDTEIDAR 189
            V+THALEWPSLTVQWLP+  +P GKD+S+QKMILGTHTS+ E N+LM+A V LPL D E DAR
Sbjct:   41 VITHALEWPSLTVQWLPDRAEPPGKDHSVQKMILGTHTSDNEPNYLMLAQVQLPLDDAEADAR 103
[Close]
BLAST of mRNA_H-akashiwo_Contig1.255.1 vs. uniprot
Match: A0A251T809_HELAN (Putative histone-binding protein n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251T809_HELAN)

HSP 1 Score: 97.8 bits (242), Expect = 5.440e-25
Identity = 44/63 (69.84%), Postives = 52/63 (82.54%), Query Frame = 1 
Query:    1 VMTHALEWPSLTVQWLPEIKKPEGKDYSIQKMILGTHTSNAEQNHLMIATVNLPLPDTEIDAR 189
            V+THALEWPSLTV+WLP+  +P GKDYS+QK+ILGTHTS  E N+LM+A V LPL D E DAR
Sbjct:   23 VITHALEWPSLTVEWLPDRDEPAGKDYSVQKLILGTHTSENEPNYLMLAQVQLPLEDAEYDAR 85
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1.255.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2XZP9_9STRA2.120e-2976.56Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A444ECS4_ENSVE4.620e-2671.88CAF1C_H4-bd domain-containing protein n=1 Tax=Ense... [more]
A0A427AC41_ENSVE1.200e-2571.88CAF1C_H4-bd domain-containing protein n=1 Tax=Ense... [more]
A0A2P4YCE2_9STRA2.170e-2571.88Histone-binding protein RBBP4 n=1 Tax=Phytophthora... [more]
A0A1Y1IJY1_KLENI3.290e-2575.00Nucleosome remodeling factor subunit CAF1/NURF55/M... [more]
A0A2Z6ZY67_9LAMI3.320e-2571.43WD-40 repeat protein n=1 Tax=Dorcoceras hygrometri... [more]
A0A1X7UZY3_AMPQE3.880e-2568.75CAF1C_H4-bd domain-containing protein n=2 Tax=Amph... [more]
A0A7S0DA23_MICPS4.130e-2573.44Hypothetical protein n=1 Tax=Micromonas pusilla Ta... [more]
A0A835EFM8_9POAL5.110e-2571.43CAF1C_H4-bd domain-containing protein n=2 Tax=Pani... [more]
A0A251T809_HELAN5.440e-2569.84Putative histone-binding protein n=1 Tax=Helianthu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1contigH-akashiwo_Contig1:10228551..10229049 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog227086.JGI_V11_66376
Preferred nameRBBP4
PFAMsCAF1C_H4-bd,WD40
Model size194
Max annot lvl2759|Eukaryota
KEGG koko:K10752,ko:K11659
KEGG Pathwayko04218,map04218
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000070,GO:0000118,GO:0000122,GO:0000228,GO:0000278,GO:0000280,GO:0000281,GO:0000775,GO:0000776,GO:0000777,GO:0000778,GO:0000779,GO:0000780,GO:0000785,GO:0000790,GO:0000793,GO:0000794,GO:0000819,GO:0000910,GO:0000976,GO:0000977,GO:0000978,GO:0000987,GO:0001012,GO:0001067,GO:0001558,GO:0001708,GO:0002064,GO:0002065,GO:0002066,GO:0002244,GO:0002376,GO:0002520,GO:0003002,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003723,GO:0003824,GO:0004407,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005694,GO:0005700,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006277,GO:0006281,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006335,GO:0006336,GO:0006338,GO:0006342,GO:0006351,GO:0006355,GO:0006357,GO:0006464,GO:0006473,GO:0006475,GO:0006476,GO:0006479,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007076,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007304,GO:0007306,GO:0007307,GO:0007346,GO:0007379,GO:0007389,GO:0007548,GO:0008150,GO:0008152,GO:0008213,GO:0008283,GO:0008284,GO:0008285,GO:0008406,GO:0009058,GO:0009059,GO:0009266,GO:0009408,GO:0009611,GO:0009628,GO:0009653,GO:0009719,GO:0009725,GO:0009790,GO:0009792,GO:0009887,GO:0009888,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010033,GO:0010035,GO:0010038,GO:0010286,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010564,GO:0010605,GO:0010629,GO:0010927,GO:0010948,GO:0014070,GO:0016043,GO:0016070,GO:0016458,GO:0016569,GO:0016570,GO:0016571,GO:0016573,GO:0016575,GO:0016580,GO:0016581,GO:0016584,GO:0016589,GO:0016787,GO:0016810,GO:0016811,GO:0017053,GO:0018130,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019213,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0019899,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0022607,GO:0030097,GO:0030154,GO:0030261,GO:0030308,GO:0030703,GO:0030707,GO:0030855,GO:0031010,GO:0031055,GO:0031099,GO:0031101,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031497,GO:0031519,GO:0031523,GO:0031974,GO:0031981,GO:0032221,GO:0032259,GO:0032501,GO:0032502,GO:0032504,GO:0032774,GO:0032989,GO:0032991,GO:0033186,GO:0033554,GO:0033558,GO:0033698,GO:0033993,GO:0034080,GO:0034508,GO:0034605,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034708,GO:0034723,GO:0034724,GO:0034728,GO:0035035,GO:0035097,GO:0035098,GO:0035239,GO:0035282,GO:0035295,GO:0035601,GO:0036211,GO:0040007,GO:0040008,GO:0040029,GO:0040035,GO:0042060,GO:0042127,GO:0042221,GO:0042246,GO:0042393,GO:0042766,GO:0042802,GO:0042803,GO:0042826,GO:0043044,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0043486,GO:0043543,GO:0043565,GO:0043687,GO:0043933,GO:0044085,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044703,GO:0045137,GO:0045138,GO:0045165,GO:0045786,GO:0045814,GO:0045892,GO:0045926,GO:0045934,GO:0046483,GO:0046661,GO:0046689,GO:0046983,GO:0048285,GO:0048468,GO:0048477,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048534,GO:0048545,GO:0048546,GO:0048557,GO:0048562,GO:0048565,GO:0048566,GO:0048568,GO:0048589,GO:0048598,GO:0048608,GO:0048609,GO:0048646,GO:0048731,GO:0048806,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051276,GO:0051301,GO:0051382,GO:0051383,GO:0051704,GO:0051716,GO:0051726,GO:0055123,GO:0060255,GO:0060429,GO:0061458,GO:0061640,GO:0061641,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0070176,GO:0070210,GO:0070316,GO:0070317,GO:0070370,GO:0070603,GO:0070822,GO:0070925,GO:0071103,GO:0071704,GO:0071824,GO:0071840,GO:0071897,GO:0080090,GO:0090304,GO:0090545,GO:0090568,GO:0090571,GO:0090598,GO:0097159,GO:0097659,GO:0098654,GO:0098687,GO:0098732,GO:0098813,GO:0140014,GO:0140096,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576,GO:1902494,GO:1902679,GO:1903047,GO:1903506,GO:1903507,GO:1904949,GO:1990234,GO:1990483,GO:1990837,GO:2000112,GO:2000113,GO:2001141
Exons2
Evalue9.51e-25
EggNOG OGsKOG0264@1|root,KOG0264@2759|Eukaryota
Descriptionchromatin organization
Cds size189
COG categoryK
BRITEko00000,ko00001,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387039.6909823-CDS-H-akashiwo_Contig1:10228550..102286801681387039.6909823-CDS-H-akashiwo_Contig1:10228550..10228680Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1 10228551..10228680 -
1681387039.7040598-CDS-H-akashiwo_Contig1:10228987..102290461681387039.7040598-CDS-H-akashiwo_Contig1:10228987..10229046Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1 10228988..10229046 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387039.7154298-UTR-H-akashiwo_Contig1:10229046..102290491681387039.7154298-UTR-H-akashiwo_Contig1:10229046..10229049Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1 10229047..10229049 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1.255.1prot_H-akashiwo_Contig1.255.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1 10228551..10229046 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1.255.1

>prot_H-akashiwo_Contig1.255.1 ID=prot_H-akashiwo_Contig1.255.1|Name=mRNA_H-akashiwo_Contig1.255.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=63bp
MTHALEWPSLTVQWLPEIKKPEGKDYSIQKMILGTHTSNAEQNHLMIATV
NLPLPDTEIDARK
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mRNA from alignment at H-akashiwo_Contig1:10228551..10229049-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1.255.1 ID=mRNA_H-akashiwo_Contig1.255.1|Name=mRNA_H-akashiwo_Contig1.255.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=499bp|location=Sequence derived from alignment at H-akashiwo_Contig1:10228551..10229049- (Heterosigma akashiwo CCMP452)
GTCATGACGCACGCCCTGGAGTGGCCAAGCTTGACAGTGCAATGGCTCCC
AGAGATAAAAAAGTAAGCATGGAGTGGACACCAGAAGCGCTGGTCCAGAG
CCAACGGGACCAACCTACCCGAATGCACTTGCACCACATTTACATTAACT
CTGTGCAGACCCTTCATTTGGTGAATAGTCTGCCAAGAGAGATGAGAAGA
AATTGGATGCATCTTCTGAACTTAGAAGTTCAGATGCCATATTCGAAGAC
CAGTTATAGTGTGAATAGAATTCATTTTTGAAAAACACAATATGCATGGT
GTTGCTGTGCCAGCATTCATGATATATAAAAAACTTCTGCCACCATTCTA
CCCCAATCACTGCTTGTAGACCCGAAGGAAAAGACTACAGTATACAAAAA
ATGATCCTGGGTACCCACACATCGAATGCAGAACAAAACCACTTAATGAT
AGCTACTGTCAACCTGCCACTTCCAGACACAGAAATCGATGCCCGGAAA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1:10228551..10229049-

>mRNA_H-akashiwo_Contig1.255.1 ID=mRNA_H-akashiwo_Contig1.255.1|Name=mRNA_H-akashiwo_Contig1.255.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=189bp|location=Sequence derived from alignment at H-akashiwo_Contig1:10228551..10229049- (Heterosigma akashiwo CCMP452)
ATGACGCACGCCCTGGAGTGGCCAAGCTTGACAGTGCAATGGCTCCCAGA
GATAAAAAAACCCGAAGGAAAAGACTACAGTATACAAAAAATGATCCTGG
GTACCCACACATCGAATGCAGAACAAAACCACTTAATGATAGCTACTGTC
AACCTGCCACTTCCAGACACAGAAATCGATGCCCGGAAA
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