mRNA_H-akashiwo_Contig1.252.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1.252.1
Unique NamemRNA_H-akashiwo_Contig1.252.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1.252.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1contigH-akashiwo_Contig1:10187261..10187923 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size663
Hectar predicted targeting categorysignal peptide
Exons1
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-10_002960.1
Cds size435
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387032.8064601-UTR-H-akashiwo_Contig1:10187260..101874881681387032.8064601-UTR-H-akashiwo_Contig1:10187260..10187488Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1 10187261..10187488 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387032.8167815-CDS-H-akashiwo_Contig1:10187488..101879231681387032.8167815-CDS-H-akashiwo_Contig1:10187488..10187923Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1 10187489..10187923 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1.252.1prot_H-akashiwo_Contig1.252.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1 10187489..10187923 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1.252.1

>prot_H-akashiwo_Contig1.252.1 ID=prot_H-akashiwo_Contig1.252.1|Name=mRNA_H-akashiwo_Contig1.252.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=145bp
MFDSLIGILDKRLSFLLIILLQSCIIQLVGTLEIEVTIDKKDHKIVLPQN
QSATSIASEFCLQHNIVNVGCTNLLAKHITNLWGDKKAFGEAEPREEDFV
VEWQHDRAQLVFLHLKKCGGTTVEQFLFEPSPLAYHRTDDLQWFF
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mRNA from alignment at H-akashiwo_Contig1:10187261..10187923+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1.252.1 ID=mRNA_H-akashiwo_Contig1.252.1|Name=mRNA_H-akashiwo_Contig1.252.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=663bp|location=Sequence derived from alignment at H-akashiwo_Contig1:10187261..10187923+ (Heterosigma akashiwo CCMP452)
GAAGAACTTCGGAAATCTTTGATGCGATTGGCAGTTGGCAGTGGGATTGG
GATAGGAGGAGTTGTTGGCTGCTACTACAACAGTAGTTGGAGTTGGAGTT
GTTGGCAAAAGCAGCATTGTTGTAAGTTGGAGCACGTTTCCTCCAATTCA
AGCCATTTGGCTTCGGGGTGTGTTACCTAAGCAATAAGCAATATTCACCA
CCATCAACGCCACCAGCCGCATTGGAGCATGTTTGATAGCTTGATCGGGA
TCTTGGACAAGAGGCTTTCCTTTTTGTTGATCATTTTGCTTCAGAGCTGC
ATCATCCAGCTCGTTGGAACTCTCGAAATCGAAGTGACTATCGATAAGAA
AGACCACAAAATAGTGTTACCCCAAAACCAAAGCGCGACTTCGATCGCGA
GTGAATTCTGCCTACAGCACAATATTGTGAATGTTGGTTGCACAAACCTC
TTAGCCAAGCACATCACAAATCTATGGGGGGATAAGAAGGCCTTCGGAGA
AGCCGAGCCCCGCGAGGAGGACTTCGTCGTCGAGTGGCAGCACGACCGGG
CCCAGCTGGTCTTCCTGCACCTGAAGAAGTGCGGGGGCACCACGGTCGAG
CAGTTCCTGTTCGAGCCCTCCCCCCTGGCCTACCACCGCACGGACGACCT
GCAGTGGTTCTTC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1:10187261..10187923+

>mRNA_H-akashiwo_Contig1.252.1 ID=mRNA_H-akashiwo_Contig1.252.1|Name=mRNA_H-akashiwo_Contig1.252.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=435bp|location=Sequence derived from alignment at H-akashiwo_Contig1:10187261..10187923+ (Heterosigma akashiwo CCMP452)
ATGTTTGATAGCTTGATCGGGATCTTGGACAAGAGGCTTTCCTTTTTGTT
GATCATTTTGCTTCAGAGCTGCATCATCCAGCTCGTTGGAACTCTCGAAA
TCGAAGTGACTATCGATAAGAAAGACCACAAAATAGTGTTACCCCAAAAC
CAAAGCGCGACTTCGATCGCGAGTGAATTCTGCCTACAGCACAATATTGT
GAATGTTGGTTGCACAAACCTCTTAGCCAAGCACATCACAAATCTATGGG
GGGATAAGAAGGCCTTCGGAGAAGCCGAGCCCCGCGAGGAGGACTTCGTC
GTCGAGTGGCAGCACGACCGGGCCCAGCTGGTCTTCCTGCACCTGAAGAA
GTGCGGGGGCACCACGGTCGAGCAGTTCCTGTTCGAGCCCTCCCCCCTGG
CCTACCACCGCACGGACGACCTGCAGTGGTTCTTC
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