mRNA_H-akashiwo_Contig1.251.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1.251.1
Unique NamemRNA_H-akashiwo_Contig1.251.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1.251.1 vs. uniprot
Match: A0A7S2ULA9_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2ULA9_9STRA)

HSP 1 Score: 104 bits (260), Expect = 3.910e-26
Identity = 50/83 (60.24%), Postives = 67/83 (80.72%), Query Frame = 3
Query:    3 RMGFSIWNLFKAGLLCTNAVAILHRGRFLSKYGLDQVNPVGGNT----MKNQAVGLINAIQYLRVPLIAVNGLVIIFELILGG 239
            +MGFSIWNLFK GLL TN++ ILHR RFL++YGLD++N +G +     ++ QA+GL+ A+QYLRVP+I VN L I+FE+ILGG
Sbjct:   28 KMGFSIWNLFKVGLLLTNSILILHRRRFLARYGLDELNNMGCDPSQKPLQAQAIGLLQAVQYLRVPVIGVNMLTIVFEMILGG 110          
BLAST of mRNA_H-akashiwo_Contig1.251.1 vs. uniprot
Match: K8ZAA6_NANGC (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=K8ZAA6_NANGC)

HSP 1 Score: 97.1 bits (240), Expect = 1.620e-23
Identity = 44/78 (56.41%), Postives = 60/78 (76.92%), Query Frame = 3
Query:    6 MGFSIWNLFKAGLLCTNAVAILHRGRFLSKYGLDQVNPVGGNTMKNQAVGLINAIQYLRVPLIAVNGLVIIFELILGG 239
            M F+IW+L+K+GLL TN VA+LHR RFL KYGLD        +++NQ VGL+NA+QYL+VPLIA+N + ++ EL+ GG
Sbjct:    1 MAFTIWSLYKSGLLFTNGVAVLHRKRFLRKYGLDVAEVADTTSIRNQVVGLLNAVQYLKVPLIALNIVTVVIELLFGG 78          
BLAST of mRNA_H-akashiwo_Contig1.251.1 vs. uniprot
Match: A0A7S2EBW0_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EBW0_TRICV)

HSP 1 Score: 91.7 bits (226), Expect = 4.550e-21
Identity = 47/83 (56.63%), Postives = 63/83 (75.90%), Query Frame = 3
Query:    3 RMGFSIWNLFKAGLLCTNAVAILHRGRFLSKYGLDQVN--PVGGNT--MKNQAVGLINAIQYLRVPLIAVNGLVIIFELILGG 239
            +MGFS+WNLFKAGLL TN+V IL+R RFL+K+GLD V   PV      ++ QA+GL+ A+ YL+ P+I +N L IIFE++LGG
Sbjct:   23 KMGFSLWNLFKAGLLMTNSVMILNRRRFLAKHGLDDVTNMPVDPQQRPLQAQAIGLLQAVSYLKFPVICLNCLTIIFEMLLGG 105          
BLAST of mRNA_H-akashiwo_Contig1.251.1 vs. uniprot
Match: A0A835YX81_9STRA (Yos1-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX81_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 4.770e-20
Identity = 44/76 (57.89%), Postives = 57/76 (75.00%), Query Frame = 3
Query:   15 SIWNLFKAGLLCTNAVAILHRGRFLSKYGLDQVNP-VGGNTMKNQAVGLINAIQYLRVPLIAVNGLVIIFELILGG 239
            S+W+LFK GLL TNAVAILH+ RFL   G  + +P +G + +KNQA+GLINA+ YLR PLIA+N L   FE++ GG
Sbjct:    3 SLWSLFKTGLLVTNAVAILHKERFLRPLGWAEPDPALGSSNLKNQAIGLINAVAYLRGPLIAINLLTCTFEMLFGG 78          
BLAST of mRNA_H-akashiwo_Contig1.251.1 vs. uniprot
Match: A0A2D4BY06_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BY06_PYTIN)

HSP 1 Score: 87.4 bits (215), Expect = 9.060e-20
Identity = 41/73 (56.16%), Postives = 54/73 (73.97%), Query Frame = 3
Query:   18 IWNLFKAGLLCTNAVAILHRGRFLSKYGLDQVNPVGGNTMKNQAVGLINAIQYLRVPLIAVNGLVIIFELILG 236
            +W  F + LL TNAV ILH  RFL KYG D+V+P  G T++NQ VG + A+QYLRVPLI VN L+I+ +L++G
Sbjct:    4 LWGFFLSSLLLTNAVCILHEKRFLRKYGWDKVDPSQGMTIRNQIVGFLVAVQYLRVPLIVVNALMILLQLVMG 76          
BLAST of mRNA_H-akashiwo_Contig1.251.1 vs. uniprot
Match: A0A8K1FQA8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FQA8_PYTOL)

HSP 1 Score: 82.8 bits (203), Expect = 5.800e-18
Identity = 39/73 (53.42%), Postives = 52/73 (71.23%), Query Frame = 3
Query:   18 IWNLFKAGLLCTNAVAILHRGRFLSKYGLDQVNPVGGNTMKNQAVGLINAIQYLRVPLIAVNGLVIIFELILG 236
            +W+ F + LL TNAV ILH  RFL  YG D+++   G T+KNQ VG + A+QYLRVPLI VN  +I+ EL++G
Sbjct:    4 LWDFFLSSLLLTNAVCILHEKRFLRPYGWDKIDSSQGMTIKNQVVGFLVAVQYLRVPLIIVNAFMILLELVMG 76          
BLAST of mRNA_H-akashiwo_Contig1.251.1 vs. uniprot
Match: A0A3F2RI45_9STRA (Uncharacterized protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RI45_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 4.630e-17
Identity = 38/73 (52.05%), Postives = 51/73 (69.86%), Query Frame = 3
Query:   18 IWNLFKAGLLCTNAVAILHRGRFLSKYGLDQVNPVGGNTMKNQAVGLINAIQYLRVPLIAVNGLVIIFELILG 236
            +WN F   LL TNAV ILH  RFL  +G D+V+   G T+KNQ VG + A+QYLR PL+ +N L+I+ EL++G
Sbjct:    4 LWNFFLTSLLLTNAVCILHEKRFLRSHGWDKVDSSQGMTIKNQIVGFLIAVQYLRFPLMVINTLMILLELVMG 76          
BLAST of mRNA_H-akashiwo_Contig1.251.1 vs. uniprot
Match: K3WSH3_GLOUD (Uncharacterized protein n=2 Tax=Pythiaceae TaxID=4782 RepID=K3WSH3_GLOUD)

HSP 1 Score: 79.7 bits (195), Expect = 9.250e-17
Identity = 38/73 (52.05%), Postives = 48/73 (65.75%), Query Frame = 3
Query:   18 IWNLFKAGLLCTNAVAILHRGRFLSKYGLDQVNPVGGNTMKNQAVGLINAIQYLRVPLIAVNGLVIIFELILG 236
            +WN     LL TNAV ILH  RFL  YG  +V    G T+KNQ VG + A+QYLRVPLI +N  +I+ EL++G
Sbjct:    4 LWNFVLTSLLLTNAVCILHEKRFLKPYGWHKVEASEGMTIKNQVVGFLVAVQYLRVPLIVINAFMIVLELVIG 76          
BLAST of mRNA_H-akashiwo_Contig1.251.1 vs. uniprot
Match: D7FPN5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPN5_ECTSI)

HSP 1 Score: 78.2 bits (191), Expect = 4.100e-16
Identity = 42/76 (55.26%), Postives = 53/76 (69.74%), Query Frame = 3
Query:    9 GFSI-WNLFKAGLLCTNAVAILHRGRFLSKYGLDQVN-PVGGNTMKNQAVGLINAIQYLRVPLIAVNGLVIIFELI 230
            GF++ W LFKAGLL TNAV ILH+ RFL KY LD+V+     + MKNQ VGLI A+ YLR PLI +N L  +  ++
Sbjct:    4 GFNLLWKLFKAGLLATNAVTILHKQRFLRKYRLDEVDHSPSASAMKNQVVGLIAAVAYLRGPLIVLNSLTCVIAML 79          
BLAST of mRNA_H-akashiwo_Contig1.251.1 vs. uniprot
Match: A0A196SAT2_BLAHN (Yos1-like protein n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196SAT2_BLAHN)

HSP 1 Score: 77.0 bits (188), Expect = 1.070e-15
Identity = 40/75 (53.33%), Postives = 52/75 (69.33%), Query Frame = 3
Query:   15 SIWNLFKAGLLCTNAVAILHRGRFLSKYGLDQVNP-VGGNTMKNQAVGLINAIQYLRVPLIAVNGLVIIFELILG 236
            S+WNL KA LL  NA+AILH  RFL KYG D V+   G N +KNQ + L+ A+++LRVPLI VN + I+ + I G
Sbjct:    3 SLWNLIKAVLLFVNALAILHEKRFLKKYGWDVVDASYGSNPIKNQCISLLQAVRWLRVPLIFVNFIFIVIDAITG 77          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1.251.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2ULA9_9STRA3.910e-2660.24Hypothetical protein n=1 Tax=Attheya septentrional... [more]
K8ZAA6_NANGC1.620e-2356.41Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A7S2EBW0_TRICV4.550e-2156.63Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A835YX81_9STRA4.770e-2057.89Yos1-like protein n=1 Tax=Tribonema minus TaxID=30... [more]
A0A2D4BY06_PYTIN9.060e-2056.16Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A8K1FQA8_PYTOL5.800e-1853.42Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A3F2RI45_9STRA4.630e-1752.05Uncharacterized protein n=2 Tax=Phytophthora kerno... [more]
K3WSH3_GLOUD9.250e-1752.05Uncharacterized protein n=2 Tax=Pythiaceae TaxID=4... [more]
D7FPN5_ECTSI4.100e-1655.26Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A196SAT2_BLAHN1.070e-1553.33Yos1-like protein n=1 Tax=Blastocystis sp. subtype... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1contigH-akashiwo_Contig1:10185307..10186236 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog115417.EPrPW00000019385
PFAMsYos1
Model size492
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.84e-20
EggNOG OGs2E2PC@1|root,2S9WB@2759|Eukaryota,1MHY6@121069|Pythiales
Ec32 ortholog descriptionYos1-like
Ec32 orthologEc-16_001310.1
DescriptionYos1-like
Cds size237
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387039.463113-UTR-H-akashiwo_Contig1:10185306..101855561681387039.463113-UTR-H-akashiwo_Contig1:10185306..10185556Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1 10185307..10185556 -
1681387039.500142-UTR-H-akashiwo_Contig1:10186231..101862361681387039.500142-UTR-H-akashiwo_Contig1:10186231..10186236Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1 10186232..10186236 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387039.4721649-CDS-H-akashiwo_Contig1:10185556..101856151681387039.4721649-CDS-H-akashiwo_Contig1:10185556..10185615Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1 10185557..10185615 -
1681387039.480085-CDS-H-akashiwo_Contig1:10185873..101859601681387039.480085-CDS-H-akashiwo_Contig1:10185873..10185960Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1 10185874..10185960 -
1681387039.4888313-CDS-H-akashiwo_Contig1:10186140..101862311681387039.4888313-CDS-H-akashiwo_Contig1:10186140..10186231Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1 10186141..10186231 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1.251.1prot_H-akashiwo_Contig1.251.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1 10185557..10186231 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1.251.1

>prot_H-akashiwo_Contig1.251.1 ID=prot_H-akashiwo_Contig1.251.1|Name=mRNA_H-akashiwo_Contig1.251.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=79bp
MGFSIWNLFKAGLLCTNAVAILHRGRFLSKYGLDQVNPVGGNTMKNQAVG
LINAIQYLRVPLIAVNGLVIIFELILGG*
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mRNA from alignment at H-akashiwo_Contig1:10185307..10186236-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1.251.1 ID=mRNA_H-akashiwo_Contig1.251.1|Name=mRNA_H-akashiwo_Contig1.251.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=930bp|location=Sequence derived from alignment at H-akashiwo_Contig1:10185307..10186236- (Heterosigma akashiwo CCMP452)
GGAGGATGGGGTTCTCGATATGGAACCTGTTCAAGGCAGGTCTACTATGC ACAAACGCTGTTGCAATCCTTCATCGGGGGAGGTTTCTATCAAAGTGTGA GTATTTCCCCTTTTGGGGCGTTTTCCTTCACAAAAAAAAACGATAAACTA CTCAACAGAAAAAAAAAAATAATAATAAAAAAAAAATACACCGGATCTGC ATGATGATGTGCATGTGCAGCAACCCTGGGAAAATATCTATGAAATGCTA ATAATTGTTGGAATACAAAAAATCAGATGGGCTTGACCAGGTTAACCCTG TGGGTGGAAACACAATGAAGAACCAAGCAGTTGGGCTGATAAACGCCATC CAGTATCTTCGAGGTAGTGAAAGATCACAGCATCAACATGAAAAAATGAT CAATACAAAACGCTTTCATAAGAACACATAATTAACCAAATCTACAATGT GCGTACAGGTGCTATATACAGATGTATTTTTCATACCTAACAGTGATCGT AGCAGGCCAACCCAAAACATTTTATAATGTAACCATGCCGCCGCCATTGT TGCCAGCCACTCAAAGAACAGATAGTGAAAAAGATCACCCATCCCTCCCT CTAATTATTGATTTTCAACAGTACCTTTGATCGCTGTAAATGGCTTGGTA ATAATATTTGAGCTCATACTTGGAGGATAAAGACTGACTTTTTGCATATG GCCGTTTGTCACTGATTATACAAGGAACAAGCATTTTCTTCACCAGTAGT GGAGCTATAATACTCATTCATTGATGATGGAGGCAGCTGTTACTGTCATA CCCCAAAACTTCCCTAATGAAAAAGTTATTGTTTCCGCTGAAATCATATG ATGCATGAAGTGGCAAGTTCTTCGATACATTCAACCAATGAATATATTAT TATTATTATTATATAAATGTATGTAAATAA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1:10185307..10186236-

>mRNA_H-akashiwo_Contig1.251.1 ID=mRNA_H-akashiwo_Contig1.251.1|Name=mRNA_H-akashiwo_Contig1.251.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=237bp|location=Sequence derived from alignment at H-akashiwo_Contig1:10185307..10186236- (Heterosigma akashiwo CCMP452)
ATGGGGTTCTCGATATGGAACCTGTTCAAGGCAGGTCTACTATGCACAAA
CGCTGTTGCAATCCTTCATCGGGGGAGGTTTCTATCAAAGTATGGGCTTG
ACCAGGTTAACCCTGTGGGTGGAAACACAATGAAGAACCAAGCAGTTGGG
CTGATAAACGCCATCCAGTATCTTCGAGTACCTTTGATCGCTGTAAATGG
CTTGGTAATAATATTTGAGCTCATACTTGGAGGATAA
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