mRNA_H-akashiwo_Contig1.247.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1.247.1
Unique NamemRNA_H-akashiwo_Contig1.247.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1.247.1 vs. uniprot
Match: UPI0003FE0FB1 (homocysteine S-methyltransferase n=1 Tax=Paludibacterium yongneupense TaxID=400061 RepID=UPI0003FE0FB1)

HSP 1 Score: 212 bits (539), Expect = 3.300e-64
Identity = 124/257 (48.25%), Postives = 167/257 (64.98%), Query Frame = 1
Query:    1 VVILDGGLATELEAAGCELDSKLWSASLLVQNPQIISQVHTKYLEAGADIITTSSYQATIKGFTDMGLSLQRAQSLLQKSVELAKEARAQTSGAPASGAGLHRWRPLVAASVGSYGAYMADGSEYLGTYGRAKGAAFLAEWHARQLEELVQAGPDLLAFETVPCLEEVEAIVGLLNGVDPRVPLPPAWVSLACKDGSTLPSGALLGDAVRAIEKFDAHRRVVAVGVNCLGPALLEQAVATVRRHSTRVVLGAFNREG 771
            +V+LDG LATELE+ GC+L+  LWSA +L++ P++I QVH  Y  AGAD+ TT+SYQA+ +GF   GLS   A++L+++++ELA EAR +    PA   G  R RPLVAASVG YGA +ADGSEY G YG ++    L ++H  +L  L+ AGPDLLA ET+PCLEE  A+  LL       P   AW+S +C+DG  L  G  L DAV A++ FD   +V+AVGVNC  P  +   +A+ R  +TR  L A+   G
Sbjct:   19 LVVLDGALATELESRGCDLNDPLWSARVLIEAPELIRQVHEDYFAAGADVATTASYQASFEGFARRGLSHDEARALMRRAIELACEARDRCWADPALRVG--RARPLVAASVGPYGAMLADGSEYRGHYGLSEEQ--LMDFHRPRLAALLAAGPDLLACETLPCLEEARALARLLT----EFPSARAWISFSCRDGEHLCQGERLADAVAALDGFD---QVIAVGVNCTAPEYIAPLLASART-ATRKPLLAYPNSG 263          
BLAST of mRNA_H-akashiwo_Contig1.247.1 vs. uniprot
Match: UPI001C03CA5A (homocysteine S-methyltransferase n=1 Tax=Paludibacterium sp. B53371 TaxID=2806263 RepID=UPI001C03CA5A)

HSP 1 Score: 209 bits (531), Expect = 5.270e-63
Identity = 119/250 (47.60%), Postives = 159/250 (63.60%), Query Frame = 1
Query:    1 VVILDGGLATELEAAGCELDSKLWSASLLVQNPQIISQVHTKYLEAGADIITTSSYQATIKGFTDMGLSLQRAQSLLQKSVELAKEARAQTSGAPASGAGLHRWRPLVAASVGSYGAYMADGSEYLGTYGRAKGAAFLAEWHARQLEELVQAGPDLLAFETVPCLEEVEAIVGLLNGVDPRVPLPPAWVSLACKDGSTLPSGALLGDAVRAIEKFDAHRRVVAVGVNCLGPALLEQAVATVRRHSTRVVL 750
            V++LDG LATELEA GC+L+  LWSA +L++ P +I QVH  Y  AGAD+ TT+SYQAT +GF   GL  + A  L++++VELA+EAR      PA  AG  R +PLVAASVG YGA +ADGSEY G Y  A     L  +H  ++ EL+ AGPDLLA ETVPCL E  A+  LL       P   AW+S +C+DG     G LL D + A+E FD   +V+AVG+NC  P  + + + + R  +++ +L
Sbjct:   17 VMVLDGALATELEARGCDLNDPLWSARVLIEQPALIRQVHADYFSAGADVATTASYQATFEGFARRGLDHEAAAGLMRRAVELAREARDAFWAEPAHRAG--RLKPLVAASVGPYGAMLADGSEYRGDY--ALDEEGLMAFHRPRMAELLAAGPDLLACETVPCLSEARALARLLG----EFPQARAWISFSCRDGRHNSQGELLADCLAALEGFD---QVLAVGLNCTAPGFVPELLQSARSATSKPLL 255          
BLAST of mRNA_H-akashiwo_Contig1.247.1 vs. uniprot
Match: A0A2K2DF86_BRADI (Hcy-binding domain-containing protein n=2 Tax=Brachypodium distachyon TaxID=15368 RepID=A0A2K2DF86_BRADI)

HSP 1 Score: 208 bits (529), Expect = 3.640e-62
Identity = 123/257 (47.86%), Postives = 165/257 (64.20%), Query Frame = 1
Query:    4 VILDGGLATELEAAGCELDSKLWSASLLVQNPQIISQVHTKYLEAGADIITTSSYQATIKGFTDMGLSLQRAQSLLQKSVELAKEARA----QTSGAPASGA---GLHRWRP-LVAASVGSYGAYMADGSEYLGTYGRAKGAAFLAEWHARQLEELVQAGPDLLAFETVPCLEEVEAIVGLLNGVDPRVPLPPAWVSLACKDGSTLPSGALLGDAVRAIEKFDAHRRVVAVGVNCLGPALLEQAVATVRRHSTRVVL 750
            ++LDG L TELEA G +L  +LWSAS LV  P II +VH  YLEAGA+IITT+SYQAT++GF   GLS +++++LL++SVE+A+EARA      S  P +G    G    RP LVAASVGSYGAY+ADGSEY G YGR+     L  +H R+L+ L  AGPDL+AFET+P   E +A   LL   D R+P   AW S   KDG+   SG  + +        D+ RRV +VG+NC  P L+   + ++R+  T+ ++
Sbjct:   25 LVLDGALGTELEAHGADLQDELWSASCLVSAPHIIRKVHLDYLEAGANIITTASYQATLQGFQSRGLSSEQSETLLRRSVEIAQEARAIFVEGRSKGPYAGRENDGSRERRPVLVAASVGSYGAYLADGSEYTGDYGRSVTKEALKNFHRRRLQVLADAGPDLIAFETIPNKLEAQAYSELLEENDIRIP---AWFSFTSKDGANAASGDPITECAAVA---DSCRRVASVGINCTAPGLIHGLILSIRKVYTKAIV 275          
BLAST of mRNA_H-akashiwo_Contig1.247.1 vs. uniprot
Match: A0A4R7BAK5_9NEIS (Homocysteine S-methyltransferase n=1 Tax=Paludibacterium purpuratum TaxID=1144873 RepID=A0A4R7BAK5_9NEIS)

HSP 1 Score: 206 bits (525), Expect = 5.000e-62
Identity = 122/247 (49.39%), Postives = 158/247 (63.97%), Query Frame = 1
Query:    1 VVILDGGLATELEAAGCELDSKLWSASLLVQNPQIISQVHTKYLEAGADIITTSSYQATIKGFTDMGLSLQRAQSLLQKSVELAKEARAQTSGAPASGAGLHRWRPLVAASVGSYGAYMADGSEYLGTYGRAKGAAFLAEWHARQLEELVQAGPDLLAFETVPCLEEVEAIVGLLNGVDPRVPLPPAWVSLACKDGSTLPSGALLGDAVRAIEKFDAHRRVVAVGVNCLGP----ALLEQAVATVRR 729
            VV+LDG LATEL A GC+L+  LWSA +L++ P++I QVH  Y  AGAD+ TT+SYQAT +GF   GL+ ++A  L+Q+SVELA+ AR      PA   G  R RPLVAASVG YGA++ADGSEY G YG  + A  L ++H  +L  L+ AGPDLLA ET+PCL E  A+  LL+      P   AW+S +C+D +    G  L D + A+E F+   RVVAVG+NC  P    ALL  A    R+
Sbjct:   17 VVVLDGALATELAARGCDLNDPLWSARVLIEAPELIQQVHADYFAAGADVATTASYQATFEGFARRGLTHEQAIELMQRSVELARSARDAFWAEPAHREG--RLRPLVAASVGPYGAWLADGSEYRGHYGLDEAA--LMDFHRPRLAALLAAGPDLLACETLPCLAEARALARLLS----EFPSAYAWISFSCRDDAHNCQGEALADCLAALEGFE---RVVAVGINCTAPTFVPALLRSAARITRK 252          
BLAST of mRNA_H-akashiwo_Contig1.247.1 vs. uniprot
Match: T5H8M0_BACLI (Homocysteine methyltransferase n=29 Tax=Bacillaceae TaxID=186817 RepID=T5H8M0_BACLI)

HSP 1 Score: 206 bits (523), Expect = 8.410e-62
Identity = 113/250 (45.20%), Postives = 160/250 (64.00%), Query Frame = 1
Query:    1 VVILDGGLATELEAAGCELDSKLWSASLLVQNPQIISQVHTKYLEAGADIITTSSYQATIKGFTDMGLSLQRAQSLLQKSVELAKEARAQTSGAPASGAGLHRWRPLVAASVGSYGAYMADGSEYLGTYGRAKGAAFLAEWHARQLEELVQAGPDLLAFETVPCLEEVEAIVGLLNGVDPRVPLPPAWVSLACKDGSTLPSGALLGDAVRAIEKFDAHRRVVAVGVNCLGPALLEQAVATVRRHSTRVVL 750
            V+ILDG +ATELE  GC+L+  LWSA +L++NP++I QVH  Y  AGAD   T+SYQ+T++GFT  GLS Q A  L+++SV LA EAR +   AP +  G  R +P VAASVG YGA++ADGSEY G YG  +    LA++H R++  L++AG D+LA ET+PCL E +AIV LL       P   AW+S + KDG  +  G   G+  + +   D H +V AVGVNC     +   +  +++H+ + ++
Sbjct:   14 VIILDGAMATELERYGCDLNDSLWSAKILIENPELIKQVHLDYFRAGADCAITASYQSTVEGFTKRGLSEQEALHLIRESVRLAAEARDEFWAAPENREG--RPKPFVAASVGPYGAFLADGSEYQGNYGVTEDE--LADFHRRRMGALIEAGADILACETIPCLSEAKAIVHLLK----EFPDTHAWISFSAKDGRHISDGTKAGECAKWL---DQHDQVAAVGVNCTRLEHVSSLIGGIKKHTAKPII 252          
BLAST of mRNA_H-akashiwo_Contig1.247.1 vs. uniprot
Match: A0A2K3MXN1_TRIPR (Homocysteine S-methyltransferase 1-like protein n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3MXN1_TRIPR)

HSP 1 Score: 205 bits (521), Expect = 1.090e-61
Identity = 111/249 (44.58%), Postives = 156/249 (62.65%), Query Frame = 1
Query:    4 VILDGGLATELEAAGCELDSKLWSASLLVQNPQIISQVHTKYLEAGADIITTSSYQATIKGFTDMGLSLQRAQSLLQKSVELAKEARAQTSGAPASGAGLHRWRPLVAASVGSYGAYMADGSEYLGTYGRAKGAAFLAEWHARQLEELVQAGPDLLAFETVPCLEEVEAIVGLLNGVDPRVPLPPAWVSLACKDGSTLPSGALLGDAVRAIEKFDAHRRVVAVGVNCLGPALLEQAVATVRRHSTRVVL 750
            V+ DGG AT LE  G  ++  LWSA  L++ P +I QVH +YLEAGADI+ TSSYQATI GF   GLS++  ++LLQ+SV+LA EAR     +     G    R LVAAS+GSYGAY+ADGSEY G YG       L ++H R+L+ LV+AGPDLLAFET+P   E +A+V LL  ++ ++P   +W+     DG   PSG    + +  I K +   +V AVG+NC  P  +E  ++  ++ + + ++
Sbjct:   20 VVTDGGFATHLETLGASINDPLWSAICLIKQPHLIKQVHLEYLEAGADILVTSSYQATIPGFLSKGLSIEEGEALLQRSVKLAVEARDSFGTSAKRNPGNKYRRALVAASIGSYGAYLADGSEYRGLYGPDVNLKKLKDFHRRRLQVLVEAGPDLLAFETIPNKLEAQALVELLEEINVQIP---SWICFTSVDGENAPSGESFQECLEVINKCN---KVEAVGINCAPPHFMESLISKFKQLTKKAII 262          
BLAST of mRNA_H-akashiwo_Contig1.247.1 vs. uniprot
Match: A0A6C0NZZ0_9BACL (Homocysteine S-methyltransferase n=1 Tax=Paenibacillus rhizovicinus TaxID=2704463 RepID=A0A6C0NZZ0_9BACL)

HSP 1 Score: 204 bits (519), Expect = 3.080e-61
Identity = 113/254 (44.49%), Postives = 160/254 (62.99%), Query Frame = 1
Query:    1 VVILDGGLATELEAAGCELDSKLWSASLLVQNPQIISQVHTKYLEAGADIITTSSYQATIKGFTDMGLSLQRAQSLLQKSVELAKEARAQTSGAPASGAGLHRWRPLVAASVGSYGAYMADGSEYLGTYGRAKGAAFLAEWHARQLEELVQAGPDLLAFETVPCLEEVEAIVGLLNGVDPRVPLPPAWVSLACKDGSTLPSGALLGDAVRAIEKFDAHRRVVAVGVNCLGPALLEQAVATVRRHSTRVVLGAFN 762
            V+ILDG +ATELE  GC+L+  LWSA +L+ NP++I +VHT Y  AGAD   T+SYQAT++GF   GL+   A +L+++SV +A EAR      P +  G  R +P+VAASVG YGA++ADGSEY G Y   +    LA++H  ++  L++AG D+LA ET+PCL E +AI+GLL    P V    AW+S + KD   + SG  + +  + +   DAH +V AVGVNC  P  +   V  + RH+ + V+   N
Sbjct:   13 VLILDGAMATELERHGCDLNDSLWSAKVLMDNPELIGRVHTDYFAAGADAAITASYQATVEGFRGRGLNEAEAVALIRRSVRIAVEARDAFWAEPGNRPG--RLKPIVAASVGPYGAFLADGSEYRGDYALTEEE--LADFHRERMRALIEAGADVLACETIPCLREAKAIIGLLEAEFPGVY---AWISFSAKDAQHISSGETIAECAQWL---DAHEQVAAVGVNCTPPQYINALVGEIGRHTAKPVIAYPN 256          
BLAST of mRNA_H-akashiwo_Contig1.247.1 vs. uniprot
Match: A0A7J6HK27_CANSA (Hcy-binding domain-containing protein n=1 Tax=Cannabis sativa TaxID=3483 RepID=A0A7J6HK27_CANSA)

HSP 1 Score: 204 bits (519), Expect = 4.730e-61
Identity = 111/249 (44.58%), Postives = 162/249 (65.06%), Query Frame = 1
Query:    7 ILDGGLATELEAAGCELDSKLWSASLLVQNPQIISQVHTKYLEAGADIITTSSYQATIKGFTDMGLSLQRAQSLLQKSVELAKEARAQTSGAPASGAGLHRW-RPLVAASVGSYGAYMADGSEYLGTYGRAKGAAFLAEWHARQLEELVQAGPDLLAFETVPCLEEVEAIVGLLNGVDPRVPLPPAWVSLACKDGSTLPSGALLGDAVRAIEKFDAHRRVVAVGVNCLGPALLEQAVATVRRHSTRVVL 750
            ++DGG AT+LE  G +++  LWSA  L+++P +I +VH +YLEAGADI+ TSSYQAT+ GF   GLS++  +SLL++SVELA EAR     +  +  G H + R LVAAS+GSYGAY+ADGSEY G+YG   G   L ++H ++L+ LV+AGPDLLAFET+P   E +A V LL   + ++P   +W+  +  DG   PSG    + +  I K D   +V AVG+NC  P  +E  +  + + + + ++
Sbjct:   21 VVDGGFATQLEKHGADINDPLWSALCLIKDPHLIKKVHKEYLEAGADILVTSSYQATLPGFVSRGLSIEEGESLLRRSVELALEARDSFWDSMKNKHGGHAYNRALVAASIGSYGAYLADGSEYSGSYGSNVGLDKLKDFHRKRLQILVEAGPDLLAFETIPNKLEAQACVELLEEENIKIP---SWICFSSVDGENAPSGESFKECLNVINKCD---KVKAVGINCAPPQFIEDLILKLNKLTDKAIV 263          
BLAST of mRNA_H-akashiwo_Contig1.247.1 vs. uniprot
Match: J3L4J7_ORYBR (Hcy-binding domain-containing protein n=2 Tax=Oryza TaxID=4527 RepID=J3L4J7_ORYBR)

HSP 1 Score: 205 bits (522), Expect = 4.790e-61
Identity = 119/261 (45.59%), Postives = 168/261 (64.37%), Query Frame = 1
Query:    7 ILDGGLATELEAAGCELDSKLWSASLLVQNPQIISQVHTKYLEAGADIITTSSYQATIKGFTDMGLSLQRAQSLLQKSVELAKEARA----QTSGAPASGAGLHRWRP---------LVAASVGSYGAYMADGSEYLGTYGRAKGAAFLAEWHARQLEELVQAGPDLLAFETVPCLEEVEAIVGLLNGVDPRVPLPPAWVSLACKDGSTLPSGALLGDAVRAIEKFDAHRRVVAVGVNCLGPALLEQAVATVRRHSTRVVL 750
            ++DGGLATELEA G +L  +LWSA  L+  P +I +VH  YL+AGA+IIT++SYQATI+GF + GLS +R+++LL++SV +A+EARA     +S  P +  G+H  R          LVAASVGSYGAY+ADGSEY G YGR+     L  +H R+L+ L  AGPDL+AFET+P   E +A   L+   D R+P   AW+S   +DG++  SG  + +        D+  RV AVGVNC  P L+   V ++R+ +++ V+
Sbjct:   25 VVDGGLATELEAHGADLRDELWSARCLLSAPHLIRKVHLDYLDAGANIITSASYQATIQGFQERGLSRERSEALLRRSVHIAQEARAIFAEGSSKGPFATHGIHHHRSAASSARCPVLVAASVGSYGAYLADGSEYTGEYGRSVTKETLKSFHRRRLQVLADAGPDLIAFETIPNKLEAQAYAELMEEEDIRIP---AWLSFTSRDGASAASGDPIAECAAVA---DSCARVAAVGVNCTAPRLIHGLVLSIRKVTSKPVV 279          
BLAST of mRNA_H-akashiwo_Contig1.247.1 vs. uniprot
Match: A0A1H0VNJ6_9BURK (Homocysteine S-methyltransferase n=2 Tax=Rhodoferax sp. OV413 TaxID=1855285 RepID=A0A1H0VNJ6_9BURK)

HSP 1 Score: 204 bits (518), Expect = 8.360e-61
Identity = 120/250 (48.00%), Postives = 155/250 (62.00%), Query Frame = 1
Query:    1 VVILDGGLATELEAAGCELDSKLWSASLLVQNPQIISQVHTKYLEAGADIITTSSYQATIKGFTDMGLSLQRAQSLLQKSVELAKEARAQTSGAPASGAGLHRWRPLVAASVGSYGAYMADGSEYLGTYGRAKGAAFLAEWHARQLEELVQAGPDLLAFETVPCLEEVEAIVGLLNGVDPRVPLPPAWVSLACKDGSTLPSGALLGDAVRAIEKFDAHRRVVAVGVNCLGPALLEQAVATVRRHSTRVVL 750
            +VILDG LATELE  G +L+  LWSA LL++ P++I QVH  Y  AGAD+ TTSSYQAT + F   G     +  L++ SV LA EAR      PA  AG  R +P++AASVG YGA +ADGSEY G YG ++ A  L ++H  +L+ LV++G DLLA ET+PCL E  AI  LL    P  P   AW+S +C+DG     G LL D V A+E FD   +VVAVGVNC  P  +   V  +  H+ + +L
Sbjct:   28 LVILDGALATELERRGADLNDPLWSAKLLIERPELIRQVHLDYFTAGADVATTSSYQATFEAFAKRGFDHAASAQLMRDSVRLAVEARDAFWADPAQRAG--RKQPIIAASVGPYGAMLADGSEYRGHYGLSEEA--LMDFHRPRLQVLVESGADLLACETIPCLAEARAIARLL----PEFPGAAAWISFSCRDGLHTSQGELLADCVAALEGFD---QVVAVGVNCTAPEHIASLVDQMHAHTRKPIL 266          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1.247.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0003FE0FB13.300e-6448.25homocysteine S-methyltransferase n=1 Tax=Paludibac... [more]
UPI001C03CA5A5.270e-6347.60homocysteine S-methyltransferase n=1 Tax=Paludibac... [more]
A0A2K2DF86_BRADI3.640e-6247.86Hcy-binding domain-containing protein n=2 Tax=Brac... [more]
A0A4R7BAK5_9NEIS5.000e-6249.39Homocysteine S-methyltransferase n=1 Tax=Paludibac... [more]
T5H8M0_BACLI8.410e-6245.20Homocysteine methyltransferase n=29 Tax=Bacillacea... [more]
A0A2K3MXN1_TRIPR1.090e-6144.58Homocysteine S-methyltransferase 1-like protein n=... [more]
A0A6C0NZZ0_9BACL3.080e-6144.49Homocysteine S-methyltransferase n=1 Tax=Paenibaci... [more]
A0A7J6HK27_CANSA4.730e-6144.58Hcy-binding domain-containing protein n=1 Tax=Cann... [more]
J3L4J7_ORYBR4.790e-6145.59Hcy-binding domain-containing protein n=2 Tax=Oryz... [more]
A0A1H0VNJ6_9BURK8.360e-6148.00Homocysteine S-methyltransferase n=2 Tax=Rhodofera... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1contigH-akashiwo_Contig1:10064343..10065239 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog15368.BRADI2G51410.1
Preferred nameHMT3
PFAMsS-methyl_trans
Model size771
Max annot lvl35493|Streptophyta
KEGG rclassRC00003,RC00035
KEGG koko:K00547
KEGG ReactionR00650
KEGG Pathwayko00270,ko01100,ko01110,map00270,map01100,map01110
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944
Exons3
Evalue8.42e-63
EggNOG OGsCOG0646@1|root,KOG1579@2759|Eukaryota,37N1K@33090|Viridiplantae,3GAMZ@35493|Streptophyta,3M26Q@4447|Liliopsida,3I7TJ@38820|Poales
EC2.1.1.10
DescriptionHomocysteine S-methyltransferase
Cds size771
COG categoryE
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387039.3505554-CDS-H-akashiwo_Contig1:10064342..100646111681387039.3505554-CDS-H-akashiwo_Contig1:10064342..10064611Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1 10064343..10064611 +
1681387039.3669019-CDS-H-akashiwo_Contig1:10064687..100647191681387039.3669019-CDS-H-akashiwo_Contig1:10064687..10064719Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1 10064688..10064719 +
1681387039.377913-CDS-H-akashiwo_Contig1:10064769..100652391681387039.377913-CDS-H-akashiwo_Contig1:10064769..10065239Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1 10064770..10065239 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1.247.1prot_H-akashiwo_Contig1.247.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1 10064343..10065239 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1.247.1

>prot_H-akashiwo_Contig1.247.1 ID=prot_H-akashiwo_Contig1.247.1|Name=mRNA_H-akashiwo_Contig1.247.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=257bp
VVILDGGLATELEAAGCELDSKLWSASLLVQNPQIISQVHTKYLEAGADI
ITTSSYQATIKGFTDMGLSLQRAQSLLQKSVELAKEARAQTSGAPASGAG
LHRWRPLVAASVGSYGAYMADGSEYLGTYGRAKGAAFLAEWHARQLEELV
QAGPDLLAFETVPCLEEVEAIVGLLNGVDPRVPLPPAWVSLACKDGSTLP
SGALLGDAVRAIEKFDAHRRVVAVGVNCLGPALLEQAVATVRRHSTRVVL
GAFNREG
back to top

mRNA from alignment at H-akashiwo_Contig1:10064343..10065239+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1.247.1 ID=mRNA_H-akashiwo_Contig1.247.1|Name=mRNA_H-akashiwo_Contig1.247.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=897bp|location=Sequence derived from alignment at H-akashiwo_Contig1:10064343..10065239+ (Heterosigma akashiwo CCMP452)
GTGGTCATCTTGGATGGGGGCTTGGCCACAGAGTTGGAGGCAGCAGGGTG TGAGCTGGATAGCAAGTTGTGGTCGGCGTCTCTACTGGTTCAGAACCCAC AGATTATCTCCCAGGTCCACACAAAGTATCTCGAGGCTGGAGCTGATATA ATAACAACATCCAGCTACCAAGCTACCATAAAAGGCTTCACTGACATGGG CCTGAGCTTGCAACGGGCCCAAAGCCTGCTGCAGAAGAGCGTGGAATTAG CGAAGGAAGCCCGAGCACAGTTCATAGCCAGGGAGTCCGCCAACCCTTCG GAGCCAAAAGATAATGGCGCCACAAAGGAGAACGGCGGCGGCAAGGACAA GCGGGGCACCGGCCTCCGGGGCCGGCTGTTCACCTTGCAAGAGGGGGGGG CCGATGAGGAGGAGGAGGAGGAGGAAGTGCACCGCTGGCGACCGCTGGTC GCGGCCTCGGTGGGCAGCTACGGGGCGTACATGGCGGACGGGTCGGAGTA CCTGGGCACGTACGGGAGGGCAAAGGGCGCCGCCTTCCTGGCGGAGTGGC ACGCGCGGCAGCTTGAGGAGCTGGTGCAGGCGGGCCCGGACCTGCTGGCC TTCGAGACCGTGCCCTGCCTCGAGGAGGTGGAGGCCATCGTGGGCCTGCT GAACGGGGTGGACCCCCGGGTGCCCCTGCCGCCGGCCTGGGTCAGCCTGG CCTGCAAGGACGGGTCCACGCTGCCCAGCGGCGCGCTGCTGGGGGACGCC GTGCGGGCCATCGAGAAGTTCGACGCCCACCGGCGGGTGGTCGCCGTGGG GGTGAACTGCCTGGGGCCGGCGCTGCTGGAGCAGGCGGTGGCCACGGTGC GGCGGCACAGCACGCGCGTGGTGCTGGGCGCATTTAACCGGGAGGGG
back to top

Coding sequence (CDS) from alignment at H-akashiwo_Contig1:10064343..10065239+

>mRNA_H-akashiwo_Contig1.247.1 ID=mRNA_H-akashiwo_Contig1.247.1|Name=mRNA_H-akashiwo_Contig1.247.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=771bp|location=Sequence derived from alignment at H-akashiwo_Contig1:10064343..10065239+ (Heterosigma akashiwo CCMP452)
GTGGTCATCTTGGATGGGGGCTTGGCCACAGAGTTGGAGGCAGCAGGGTG
TGAGCTGGATAGCAAGTTGTGGTCGGCGTCTCTACTGGTTCAGAACCCAC
AGATTATCTCCCAGGTCCACACAAAGTATCTCGAGGCTGGAGCTGATATA
ATAACAACATCCAGCTACCAAGCTACCATAAAAGGCTTCACTGACATGGG
CCTGAGCTTGCAACGGGCCCAAAGCCTGCTGCAGAAGAGCGTGGAATTAG
CGAAGGAAGCCCGAGCACAGACAAGCGGGGCACCGGCCTCCGGGGCCGGC
TTGCACCGCTGGCGACCGCTGGTCGCGGCCTCGGTGGGCAGCTACGGGGC
GTACATGGCGGACGGGTCGGAGTACCTGGGCACGTACGGGAGGGCAAAGG
GCGCCGCCTTCCTGGCGGAGTGGCACGCGCGGCAGCTTGAGGAGCTGGTG
CAGGCGGGCCCGGACCTGCTGGCCTTCGAGACCGTGCCCTGCCTCGAGGA
GGTGGAGGCCATCGTGGGCCTGCTGAACGGGGTGGACCCCCGGGTGCCCC
TGCCGCCGGCCTGGGTCAGCCTGGCCTGCAAGGACGGGTCCACGCTGCCC
AGCGGCGCGCTGCTGGGGGACGCCGTGCGGGCCATCGAGAAGTTCGACGC
CCACCGGCGGGTGGTCGCCGTGGGGGTGAACTGCCTGGGGCCGGCGCTGC
TGGAGCAGGCGGTGGCCACGGTGCGGCGGCACAGCACGCGCGTGGTGCTG
GGCGCATTTAACCGGGAGGGG
back to top