mRNA_H-akashiwo_Contig1.238.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1.238.1
Unique NamemRNA_H-akashiwo_Contig1.238.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1.238.1 vs. uniprot
Match: A0A7S3XR67_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XR67_HETAK)

HSP 1 Score: 462 bits (1189), Expect = 4.880e-163
Identity = 235/235 (100.00%), Postives = 235/235 (100.00%), Query Frame = 2 
Query:  152 MDGISFESSESIQLWKLLFNYNVYAGIASLALTTSCYWRKSSRKFIIVKEMKSTVLEKAYNQLSKFHNLRFLGSALTVATILDLVEYAPLAELTAMCAVLLYILPYLLKPSILRRDKSIGVNLTEEDLWRPISDPLVYTSLLYALPGLYALYYNMPFLGILHLYTSFGSTMFHLTRETMFFNWDNIGAMALMLIACFGFYLSLGTDMIWTAAAITGLPIGAFLLAYCGMPGELAE 856
            MDGISFESSESIQLWKLLFNYNVYAGIASLALTTSCYWRKSSRKFIIVKEMKSTVLEKAYNQLSKFHNLRFLGSALTVATILDLVEYAPLAELTAMCAVLLYILPYLLKPSILRRDKSIGVNLTEEDLWRPISDPLVYTSLLYALPGLYALYYNMPFLGILHLYTSFGSTMFHLTRETMFFNWDNIGAMALMLIACFGFYLSLGTDMIWTAAAITGLPIGAFLLAYCGMPGELAE
Sbjct:    1 MDGISFESSESIQLWKLLFNYNVYAGIASLALTTSCYWRKSSRKFIIVKEMKSTVLEKAYNQLSKFHNLRFLGSALTVATILDLVEYAPLAELTAMCAVLLYILPYLLKPSILRRDKSIGVNLTEEDLWRPISDPLVYTSLLYALPGLYALYYNMPFLGILHLYTSFGSTMFHLTRETMFFNWDNIGAMALMLIACFGFYLSLGTDMIWTAAAITGLPIGAFLLAYCGMPGELAE 235
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BLAST of mRNA_H-akashiwo_Contig1.238.1 vs. uniprot
Match: A0A7S2XVH3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XVH3_9STRA)

HSP 1 Score: 142 bits (359), Expect = 4.520e-37
Identity = 80/183 (43.72%), Postives = 111/183 (60.66%), Query Frame = 2 
Query:  329 YNQLS-KFHNLRFLGSALTVAT------ILDLVEYAPLAELTAMCAVLLYILPYLLKPSILRRDKSIGVNLTEEDLWRPISDPLVYTSLLYALPGLYALYYNMPFLGILHLYTSFGSTMFHLTRETMFFNWDNIGAMALMLIACFGFYLSLGTDMIWTAAAITGLPIGAFLLAYCGMPGELAE 856
            YN +S K H    LG  + V+       +LD +     A L  + ++L   +PYL K S LR D S G+ L+ ++  R  +DPLV+TSL Y   G+YA       + +L +YTS GST++HLTRETMFFN DNIGA +L+L+  +G YLSLG D+ WT  A  G+P+G  +L  CGMPGE+ +
Sbjct:   45 YNGMSTKLHGPFTLGLVIFVSVAFLSTVVLDWLSQVLFARLVTLFSILFMGIPYLAKASPLRSDPSRGIKLSPKEKRRSFADPLVFTSLFYMFAGIYAFSVGQYGIALLQIYTSMGSTLYHLTRETMFFNCDNIGATSLLLLTAYGLYLSLGIDLGWTILAAAGIPLGGAILHKCGMPGEVCK 227
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BLAST of mRNA_H-akashiwo_Contig1.238.1 vs. uniprot
Match: D7G2R4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2R4_ECTSI)

HSP 1 Score: 101 bits (252), Expect = 4.280e-21
Identity = 61/144 (42.36%), Postives = 84/144 (58.33%), Query Frame = 2 
Query:  419 LAELTAMCAVLLYILPYLLKPSILRRDKSIGVNLTEEDLWRPISDPLVYTSLLYALPGLYALYYNMPFLGILHLYTSFGSTMFHLTRETMFFNWDNIGAMALMLIACFGFYLSLGTDMIWTAAAITGL--PIGAFLLAYCGMPG 844
            LA + A    L+  LP+LL+ S  RRD+ +G  L   D  RP++D LV+TS +Y LP +Y LY +   +  L L T+ GST+FHLTRET FFN DN+ A +L+    +  YL + T  +W    + GL  P   F +  CGMPG
Sbjct:  147 LARVFATIGSLVACLPHLLRSSKYRRDRGLGCLLETGDKRRPLTDMLVWTSFVYCLPSVYGLYAHQYGIAGLQLMTTIGSTLFHLTRETKFFNLDNVFATSLLSTTAWSLYLGV-THGVWWYVVVIGLGGPFAIFCIVRCGMPG 289
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BLAST of mRNA_H-akashiwo_Contig1.238.1 vs. uniprot
Match: A0A835Z7G3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7G3_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 2.490e-18
Identity = 52/129 (40.31%), Postives = 75/129 (58.14%), Query Frame = 2 
Query:  464 PYLLKPSILRRDKSIGVNLTEEDLWRPISDPLVYTSLLYALPGLYALYYNMPFLGILHLYTSFGSTMFHLTRETMFFNWDNIGAMALMLIACFGFYLSLGTDMIWTAAAIT--GLPIGAFLLAYCGMPG 844
            PYLL+ S  RRD  +   L   D+ R + DPLV+TSL+YA+P LY +  +   +  L   T+ GST+FH  RET +FN DN+GA+AL+    +   L+     +W  AA+   G P+  + +  CGMPG
Sbjct:  197 PYLLRSSRYRRDPRLRCRLGRRDVRRRLRDPLVWTSLVYAVPALYGVAAHQYGVAALQAATTVGSTLFHRARETRYFNLDNVGALALLFTTAWSLALA-ARARVWAHAAVVLAGTPLAGYFMVACGMPG 324
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BLAST of mRNA_H-akashiwo_Contig1.238.1 vs. uniprot
Match: K8YWQ9_NANGC (Uncharacterized protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8YWQ9_NANGC)

HSP 1 Score: 92.4 bits (228), Expect = 4.090e-18
Identity = 51/132 (38.64%), Postives = 79/132 (59.85%), Query Frame = 2 
Query:  467 YLLKPSILRRDKSIGVNLTEEDLWRPISDPLVYTSLLYALPGLYALYYNMPFLGILHLYTSFGSTMFHLTRETMFFNWDNIGAMALMLIACFGFYLSLGTDMIWTA--AAITGLPIGAFLLAYCGMPGELAE 856
            Y +KPS L  D  + V L  +DL RP+SD LV++S +Y + G+Y+LY      G L + T  GS+++H+ +E +FFN+DN  A +L+ +  +   +++     WT   A + GLPI  FL+ +CGMP  LA 
Sbjct:   97 YFIKPSPLLDD--VTVRLHVDDLIRPVSDKLVWSSCVYGIAGVYSLYLGQYAFGTLQIVTCAGSSLYHIRKEAVFFNFDNTFASSLLFLTLYAGCMAIHVQD-WTHCFATVVGLPIAVFLIVFCGMPASLAR 225
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BLAST of mRNA_H-akashiwo_Contig1.238.1 vs. uniprot
Match: A0A7S1XWR7_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XWR7_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 9.670e-10
Identity = 50/151 (33.11%), Postives = 75/151 (49.67%), Query Frame = 2 
Query:  422 AELTAMCAVLLYILPYLLKPSILRRD---KSIGVNLTE-EDLWRPISDPLVYTS-LLYALPGLYALYYNMPFLGILHLYTSFGSTMFHLTRETMFFNWDNIGAMALMLIACFGFYLSLGTDMIWTAAA-ITGLPIGAFLLAYCGMPGELAE 856
            A + A    LL +LPYL + S+ R D   +  G  L   ED WR + D  V++S + +  P LY+       LG L L  +  S ++HL+RET+FFN DN+  ++L         L+    ++W     +  LP+  FLL YC  PG +  
Sbjct:   23 ARVAAGATALLPLLPYLGRASVYREDPGGRGQGFCLLRPEDCWRSVGDVQVWSSWVCFGGPALYSFLSAQWSLGALQLGAAITSGLYHLSRETLFFNVDNVFGLSLGCTVFVAVKLAWDRGVMWYVIVNVLVLPVAGFLLVYCDFPGVVVR 173
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1.238.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A7S3XR67_HETAK4.880e-163100.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2XVH3_9STRA4.520e-3743.72Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
D7G2R4_ECTSI4.280e-2142.36Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z7G3_9STRA2.490e-1840.31Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
K8YWQ9_NANGC4.090e-1838.64Uncharacterized protein n=3 Tax=Monodopsidaceae Ta... [more]
A0A7S1XWR7_9STRA9.670e-1033.11Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1contigH-akashiwo_Contig1:9645354..9646800 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G2R4
Model size856
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue2.12e-22
EggNOG OGs2B6F1@1|root,2S0M2@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-11_003200.1
Cds size705
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387039.1522849-CDS-H-akashiwo_Contig1:9645353..96454121681387039.1522849-CDS-H-akashiwo_Contig1:9645353..9645412Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1 9645354..9645412 -
1681387039.1671724-CDS-H-akashiwo_Contig1:9645770..96460701681387039.1671724-CDS-H-akashiwo_Contig1:9645770..9646070Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1 9645771..9646070 -
1681387039.1777499-CDS-H-akashiwo_Contig1:9646303..96466491681387039.1777499-CDS-H-akashiwo_Contig1:9646303..9646649Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1 9646304..9646649 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387039.1866584-UTR-H-akashiwo_Contig1:9646649..96468001681387039.1866584-UTR-H-akashiwo_Contig1:9646649..9646800Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1 9646650..9646800 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1.238.1prot_H-akashiwo_Contig1.238.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1 9645354..9646649 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1.238.1

>prot_H-akashiwo_Contig1.238.1 ID=prot_H-akashiwo_Contig1.238.1|Name=mRNA_H-akashiwo_Contig1.238.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=235bp
MDGISFESSESIQLWKLLFNYNVYAGIASLALTTSCYWRKSSRKFIIVKE
MKSTVLEKAYNQLSKFHNLRFLGSALTVATILDLVEYAPLAELTAMCAVL
LYILPYLLKPSILRRDKSIGVNLTEEDLWRPISDPLVYTSLLYALPGLYA
LYYNMPFLGILHLYTSFGSTMFHLTRETMFFNWDNIGAMALMLIACFGFY
LSLGTDMIWTAAAITGLPIGAFLLAYCGMPGELAE
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mRNA from alignment at H-akashiwo_Contig1:9645354..9646800-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1.238.1 ID=mRNA_H-akashiwo_Contig1.238.1|Name=mRNA_H-akashiwo_Contig1.238.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1447bp|location=Sequence derived from alignment at H-akashiwo_Contig1:9645354..9646800- (Heterosigma akashiwo CCMP452)
AACGAGCCGACTCTTCCTTCCTCAAGAGGGAGTTTCGGCGACTGCAAGCT
TGGTGCCTACATACTAGCTGGCTACAGTGGCCGTTCCCACTTCTTGTCAG
ATTCGCTCGTCAATCTGAGCTAGTGTTTTTTTTTGCTCGGTTCGCCAAAT
AATGGATGGTATAAGTTTTGAGAGTTCTGAGTCGATCCAGCTGTGGAAGC
TTTTGTTCAACTACAACGTATACGCTGGCATTGCCAGCTTAGCTCTCACA
ACAAGCTGCTACTGGAGAAAATCCTCGAGAAAATTCATTATTGTTAAAGA
AATGAAAAGTACAGTTCTGGAAAAGGCCTACAACCAGCTCAGCAAGTTTC
ACAATCTCAGATTCCTTGGTTCTGCATTGACAGTCGCCACAATATTAGAT
CTTGTGGAGTATGCTCCGTTAGCGGAGCTTACTGCGATGTGTGCAGTGTT
GTTGTATATCTTACCGTACTTACTGAAGCCCTCGATACTAAGGAGAGGTG
AGACACGTGCCCTGACTTCGAGTTTTTACCACCACTCCTCATCTTTTCTT
ACTGTTCGGTACCGCTAACTGAATTTTTTTTTTTCATCAAGTCTGCTTAG
AACCAACAGTTATTAGCGTTCCCGACTAACCCTCTTTGAAACGCAGATAC
ACGGACACACACACGCATATTTTCACTTTGCACTATCCCCTCCCTCCATT
TTACCACCTCAACCATATGTTATGAATCAGACAAATCAATTGGAGTAAAC
CTTACAGAAGAAGATCTTTGGAGACCCATCAGTGATCCTCTGGTTTACAC
CAGTTTACTCTATGCTCTTCCTGGGCTTTACGCATTGTATTACAATATGC
CATTCCTGGGAATTCTTCATCTGTATACGTCCTTCGGGTCAACCATGTTC
CATTTGACACGCGAAACCATGTTCTTCAACTGGGATAATATTGGAGCAAT
GGCGCTAATGCTCATTGCCTGCTTTGGATTCTATCTTTCTTTGGGAACAG
ATATGATCTGGACTGCTGCAGCAATAACAGGTGTGTGCTGGATGCTATGT
TTGCCCGTGGCTTTCAGCATGAATTTGTAGGCCTGGACAGCAAGAGGAAT
ATTATTTATATTTACAAAGACAACCCCACAAAGGGGCACGGCCAACGAAC
CCGAGCACATTTGCGCTTCGATGCATTATGAGGAAACCAATCGCACTCCA
TTGACCGCACCGCTTCGTGCGCTCGAACTACATTTGCAGCAGACTATTGG
CTCATGGCCACTGTGCACAGGTCTTTTTGATTTCATGTTTTCCTCGTCAC
GCATGCATGCGTGTGTGTGTCCCCTCGGGAATTCCACTCTCCCTCCCTTC
CCCCGTGCGCTCTCCTCTCCTCCCCTGTGGGTGCCCAGGGCTGCCCATCG
GGGCCTTCCTGCTGGCATACTGCGGCATGCCCGGCGAACTTGCCGAG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1:9645354..9646800-

>mRNA_H-akashiwo_Contig1.238.1 ID=mRNA_H-akashiwo_Contig1.238.1|Name=mRNA_H-akashiwo_Contig1.238.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=705bp|location=Sequence derived from alignment at H-akashiwo_Contig1:9645354..9646800- (Heterosigma akashiwo CCMP452)
ATGGATGGTATAAGTTTTGAGAGTTCTGAGTCGATCCAGCTGTGGAAGCT
TTTGTTCAACTACAACGTATACGCTGGCATTGCCAGCTTAGCTCTCACAA
CAAGCTGCTACTGGAGAAAATCCTCGAGAAAATTCATTATTGTTAAAGAA
ATGAAAAGTACAGTTCTGGAAAAGGCCTACAACCAGCTCAGCAAGTTTCA
CAATCTCAGATTCCTTGGTTCTGCATTGACAGTCGCCACAATATTAGATC
TTGTGGAGTATGCTCCGTTAGCGGAGCTTACTGCGATGTGTGCAGTGTTG
TTGTATATCTTACCGTACTTACTGAAGCCCTCGATACTAAGGAGAGACAA
ATCAATTGGAGTAAACCTTACAGAAGAAGATCTTTGGAGACCCATCAGTG
ATCCTCTGGTTTACACCAGTTTACTCTATGCTCTTCCTGGGCTTTACGCA
TTGTATTACAATATGCCATTCCTGGGAATTCTTCATCTGTATACGTCCTT
CGGGTCAACCATGTTCCATTTGACACGCGAAACCATGTTCTTCAACTGGG
ATAATATTGGAGCAATGGCGCTAATGCTCATTGCCTGCTTTGGATTCTAT
CTTTCTTTGGGAACAGATATGATCTGGACTGCTGCAGCAATAACAGGGCT
GCCCATCGGGGCCTTCCTGCTGGCATACTGCGGCATGCCCGGCGAACTTG
CCGAG
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