mRNA_H-akashiwo_Contig1.237.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1.237.1
Unique NamemRNA_H-akashiwo_Contig1.237.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1.237.1 vs. uniprot
Match: K8YWQ9_NANGC (Uncharacterized protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8YWQ9_NANGC)

HSP 1 Score: 76.6 bits (187), Expect = 7.090e-14
Identity = 30/70 (42.86%), Postives = 43/70 (61.43%), Query Frame = 2 
Query:   14 RYPLWHTLWHWVSAAGTFLNVYFIVLHYPGLDGGAGSLPFFPELPAVPVTAIVAGAAINLIGNFAGVMPL 223
            +Y  WHT WH+VS AGT +  +F   H+PGL  G  +    P LP VP   +    ++N++GN+AGVMP+
Sbjct:  240 QYDDWHTAWHFVSGAGTVVTAHFFQKHWPGLQCGGSNFGVLPHLPVVPTACVALALSLNIVGNWAGVMPV 309
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1.237.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
K8YWQ9_NANGC7.090e-1442.86Uncharacterized protein n=3 Tax=Monodopsidaceae Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1contigH-akashiwo_Contig1:9641706..9645060 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size431
Hectar predicted targeting categoryother localisation
Exons3
Cds size267
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387031.8116872-UTR-H-akashiwo_Contig1:9641705..96418681681387031.8116872-UTR-H-akashiwo_Contig1:9641705..9641868Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1 9641706..9641868 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387031.8372471-CDS-H-akashiwo_Contig1:9641868..96419931681387031.8372471-CDS-H-akashiwo_Contig1:9641868..9641993Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1 9641869..9641993 -
1681387031.849099-CDS-H-akashiwo_Contig1:9644520..96446031681387031.849099-CDS-H-akashiwo_Contig1:9644520..9644603Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1 9644521..9644603 -
1681387031.8621304-CDS-H-akashiwo_Contig1:9645001..96450601681387031.8621304-CDS-H-akashiwo_Contig1:9645001..9645060Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1 9645002..9645060 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1.237.1prot_H-akashiwo_Contig1.237.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1 9641869..9645060 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1.237.1

>prot_H-akashiwo_Contig1.237.1 ID=prot_H-akashiwo_Contig1.237.1|Name=mRNA_H-akashiwo_Contig1.237.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=89bp
RLRPALPALAHPLALGLGCRNIFECIFHCASLSWAGWWRRLSPILPRASS
GACHSHSCRCSNKLDRKFRWRNAAAVTKRERNKIGNFG*
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mRNA from alignment at H-akashiwo_Contig1:9641706..9645060-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1.237.1 ID=mRNA_H-akashiwo_Contig1.237.1|Name=mRNA_H-akashiwo_Contig1.237.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=3355bp|location=Sequence derived from alignment at H-akashiwo_Contig1:9641706..9645060- (Heterosigma akashiwo CCMP452)
CGTCTGCGACCCGCGCTACCCGCTTTGGCACACCCTTTGGCATTGGGTCT
CGGCTGCAGGTAGAAAACTGGGTATAGAAAAATGAGTATAGAAAGGCTGT
CCAAGTATACTTCCCTTCTCGCAAAAGTGTATGCCCTGCGCCACCATATA
GAAATTGGTATATTCATTGATCATGCACTTCAGGAAACGTGGATTGTCGA
GTTTGTTTGGGGACTTCTTCTTTCAAAGGAAGGAGAGGGGGCTTCCAAAG
TAAATTCTTGTACATAGAGAGAGTCGCACTTTTATCATTTTACAATCGTT
GCACGCCATTGATCGTTTTGTTCAAACAGAACGTATGATATATCTAGATG
TTCTATGTAATCATCATCCCGGCAAACACGTCTCTTTATAATCATTTTTC
TTTGATAACATTATAGAATAATATTGTTTGCCTCCACCTCCCCCTTCTTT
TGGCCAGGAACATTTTTGAATGTATATTTCATTGTGCTTCATTATCCTGG
GCTGGATGGTGGCGCAGGCTCTCTCCCATTCTTCCCCGAGGTGAGTTGAG
TGGCGATAAAATTAAGATGTGTAACTTATTGTTGCATGCTCAATTCCAAC
TTTCAACCTGGAAAATGATCTGCTCTATGATAGCATGTTGTATAGATGAA
TTCATTTTGATTTTAAACAACGCAATTATAACAACTGAAGAGAGCAGTCT
GATAGAGACCAGTATTAGAAGTGCGCTTGCATGTCCAGCAGCTTAACAAT
CACTTTTTGGGAGGTGTTGGATTTAACAGAAAAGCCGCTTCCACTATCAG
TGAGTATATAGTACGTCTCAGAATTGAGCGACTAATTGGAATGGCATCGG
CAGAACTCAAGCTATACTCTAACGAGGTTTCATTTTCTAGCTTGGGATGT
CGGCTACCAATGGTGAAGTTATGGGCTTCAAATGTTTGCTTTCAGCGGGG
GCAAAGAGCATGCCAAATTGGGGCGACGAACTTACCTAATCTTTGAATCG
ACATATTTCAAAGCACAGATCAAATATCGACACACTTCCTTGGGGTGAAA
TGTAGCATTTTTCAAGCTCTTTCCAGTGCAATTAAGTTTGTGAATTGTGG
TGGTGTGCGCAAGGCTAGAGTCGACGAAGAAGAAACCGGTGTGTTTCGTG
TGAATTCAGCGGTAGGTACTTTCTAGAGTGGCTGCTGCTCATCAGCTTCT
GATGACATCAAGTTGCAAATACATGTCAAAACAGAAGAACCGAAGATGAA
GTACAGGAAAATATATAGATAATGAAACGCCCAAATCCGTAACGTCGTAT
AACCATCAAATAAAGGAGGAAATCGACCATCTGGTAGTCAGATTTGTGGC
TCTCAGAGCCTGAATTTCTTCTTCTTCACAACTCACACCCACGTCATCGA
TCTCTTCTTCTACACTTTTCTTGATCTTCTGCTTTATCTCAATTCAATTT
CGCTCTCCGAAGTCAGCTGGTTGAAGACCCGAGACCTGAGATCAGATGGT
GACACATGGGTGGAAATGCTAAAATCTAGGGTGGAAGGATGTTTTCCCCC
TTGTATGACCAATATTTTAAAAGTCCACATTTAGCCCTAATAACTTATAC
GCTGGAATGTTTCATCTTTGACAGTCGATGACGTGTTGAAGTGCGTTCCA
GCATTGAACCATCTAATGTATGTGTTAGGGTCTGTCTCGCTATGGTGGCA
TGAAGAGAGAGGTATCAGTAGCTGTCGGTCGGCCGTAGCTCCTATCGAGT
ATCGCAAATCGAAAAACTGACCGTAGGTTCCACTACCCAGTTTTTTACGT
AGTTTCCAGGGAAAGTGTCCATTTTGTGTGATTTTAATTTTTTCTACGGT
TTTCGGACCACCCCCCTTGTAGCCTTATACCCGACGTGGTCAAAAAGGAA
ACCTTCCCGAAAAAATCACGCCCAGTGGATACGTTTTTCAGAATCCTTGG
AAAAAACGGTTATAAGAATGTATTCTCCATTTTGTTGGCTGGAATACTCG
ATAGCCGTGAAAACTCTTTTAAGATCCAGCCATGGTGGTGGTGGTGGTAC
CGGTTTTTAATTTCCGTAACCCGTAATTTCAAAGCACGACAACTCCCTAT
TTCTTCTTCCTCTCGCATTTAATTCATGCAAAAAAAAAAGAAAAACACAA
AACAGCAGAAGAAGTGGAAGAAGCCGTTGAGTAACACCATGATAAGGATC
TTCTCAACGTGGCAGTGGGAGGAACCACCGACCACGACGAACCCTATAGA
ACCACCGACCACGACGAACCAAATGGCAGACTCGGATTTTACCACCATGG
AGCCATTTTTCACGGTATATTGGGTTCAGTGAATATCTACGTAGTAGTGA
TCACTACATGTATCTTCGGGTGCAGTGGTTCTCGTCCATTGCTTGATGTG
CCTCTCCTTGGGCCCCTCATCCATATTTTTGATCAAACCCGCAAAATTCG
GCGATTAGTGGATGGCATGACATCACTTTTAACGGACAAAGAAGGATCGA
CGCAGGTAAATTTTGATCAATACATGCAAAACATGATCGAAACATGTAAT
CCAATTCATATTGGCTCTGGGAAGTCGCTTTGCTAGGTGTAGTTCGCTCC
TTTTTTGCAATCCATTGATTACTGATGACCTAAACAATGGCCATACCCTC
TTCTGGGCACAGAAAATCGCTAACTCCGCCACCCAAACGCTCAAGTACCT
TCCTATGTACATCCTAAGGTATGAATAAATTGCATTGTGCTTTTCATACA
AGCTTACTGGGCCAAGATAACGGGGGGTACCTCTATTGATCAGTCTTCTT
TCATAACACCATAGCACCACCCGAAAAAAAATATAGCTCAAAATACTCCC
CAATTAGTTGCTCATTTCAGAGACGTACTAGCTCCGCATTGCCAATCCTT
TTTGTAAAGCTTGACGACACAATGTACATTATTTATTTATTTTTAACATT
TTTTGTTGTCATCTTATCGTCGTATTGTAATTACCGCCGGATCATCTTTT
TTCTCCCCTCTTCATCAGCTTATCTTTTTTTACATGTGTTTTCATGCCTG
CACTGTTCATTCTCCAGCTTCCAGCGGTGCCTGTCACAGCCATAGTTGCA
GGTGCAGCAATAAACTTGATAGGAAATTTCGCTGGCGTAATGCCGCTGCG
GTGACAAAAAGAGAAAGGAACAAAATAGGCAATTTTGGATAACAACAGCA
CGTTTTTGTTCCTTGTGGATAAGATCAGGCTGTAGACTGTGAGAGCAAAT
TTGGTAGAAGAAATAAGAAGTGGTACTCATCACAGCGTTGTTATATCATA
TATATTATCTAATAATATATGCCACTGCTTCTTCTGTACCTAGGATCGTC
TACGA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1:9641706..9645060-

>mRNA_H-akashiwo_Contig1.237.1 ID=mRNA_H-akashiwo_Contig1.237.1|Name=mRNA_H-akashiwo_Contig1.237.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=267bp|location=Sequence derived from alignment at H-akashiwo_Contig1:9641706..9645060- (Heterosigma akashiwo CCMP452)
CGTCTGCGACCCGCGCTACCCGCTTTGGCACACCCTTTGGCATTGGGTCT
CGGCTGCAGGAACATTTTTGAATGTATATTTCATTGTGCTTCATTATCCT
GGGCTGGATGGTGGCGCAGGCTCTCTCCCATTCTTCCCCGAGCTTCCAGC
GGTGCCTGTCACAGCCATAGTTGCAGGTGCAGCAATAAACTTGATAGGAA
ATTTCGCTGGCGTAATGCCGCTGCGGTGACAAAAAGAGAAAGGAACAAAA
TAGGCAATTTTGGATAA
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