mRNA_H-akashiwo_Contig1.226.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1.226.1
Unique NamemRNA_H-akashiwo_Contig1.226.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
[Close]
BLAST of mRNA_H-akashiwo_Contig1.226.1 vs. uniprot
Match: A0A448Z7F0_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z7F0_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 2.490e-7
Identity = 24/45 (53.33%), Postives = 34/45 (75.56%), Query Frame = 1 
Query:    1 RWGDFEDLVTALQQTLTKETGPHSQRKSSLRHAAWVEEAGGRVRG 135
            R GDFE+++  L++ L  E GP+ +R S+LR+ AWVE AGG+VRG
Sbjct:  887 RMGDFENVLLELREKLDAEFGPYHKRPSALRYKAWVETAGGKVRG 931
[Close]
BLAST of mRNA_H-akashiwo_Contig1.226.1 vs. uniprot
Match: A0A7S0DF82_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DF82_9EUKA)

HSP 1 Score: 55.1 bits (131), Expect = 2.500e-7
Identity = 24/48 (50.00%), Postives = 32/48 (66.67%), Query Frame = 1 
Query:   10 DFEDLVTALQQTLTKETGPHSQRKSSLRHAAWVEEAGGRVRGRNHTYD 153
            DF + +T L  +  KE GP  +RKSS+RHA WV+E+GG V+G    YD
Sbjct: 3929 DFHETLTHLVTSFQKELGPAHERKSSVRHATWVKESGGVVKGTKRKYD 3976
[Close]
BLAST of mRNA_H-akashiwo_Contig1.226.1 vs. uniprot
Match: A0A812WZR4_SYMMI (Hypothetical protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812WZR4_SYMMI)

HSP 1 Score: 52.0 bits (123), Expect = 3.270e-7
Identity = 20/38 (52.63%), Postives = 29/38 (76.32%), Query Frame = 1 
Query:    1 RWGDFEDLVTALQQTLTKETGPHSQRKSSLRHAAWVEE 114
            RW DFED+++ L+ T+TKE GP   RKSS+R++ WV +
Sbjct:   59 RWTDFEDIISNLRSTMTKEIGPFKLRKSSMRYSGWVHD 96
[Close]
BLAST of mRNA_H-akashiwo_Contig1.226.1 vs. uniprot
Match: A0A7S3L3K8_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L3K8_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 3.400e-7
Identity = 23/45 (51.11%), Postives = 35/45 (77.78%), Query Frame = 1 
Query:    1 RWGDFEDLVTALQQTLTKETGPHSQRKSSLRHAAWVEEAGGRVRG 135
            R  DFE+++ AL++ L  E GP+ +R ++L++ AWVEEAGG+VRG
Sbjct:  771 RMTDFENVLVALREQLDSEFGPYHKRPAALKYKAWVEEAGGKVRG 815
[Close]
BLAST of mRNA_H-akashiwo_Contig1.226.1 vs. uniprot
Match: A0A7R9WMC4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WMC4_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 4.130e-7
Identity = 24/45 (53.33%), Postives = 34/45 (75.56%), Query Frame = 1 
Query:    1 RWGDFEDLVTALQQTLTKETGPHSQRKSSLRHAAWVEEAGGRVRG 135
            R+ DFE+++T L+  L  E GP+ +R S+L + AWVEEAGG+VRG
Sbjct:    7 RFTDFENVLTELRDQLDSEFGPYHKRPSALLYKAWVEEAGGKVRG 51
[Close]
BLAST of mRNA_H-akashiwo_Contig1.226.1 vs. uniprot
Match: A0A1Z5J633_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5J633_FISSO)

HSP 1 Score: 53.5 bits (127), Expect = 8.760e-7
Identity = 22/45 (48.89%), Postives = 34/45 (75.56%), Query Frame = 1 
Query:    1 RWGDFEDLVTALQQTLTKETGPHSQRKSSLRHAAWVEEAGGRVRG 135
            R+ DFE+++  L++ L  E GP  +R ++L++ AWVEEAGG+VRG
Sbjct: 3176 RFSDFENVIGVLREQLDSEFGPFHKRPAALKYKAWVEEAGGKVRG 3220
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1.226.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A448Z7F0_9STRA2.490e-753.33Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A7S0DF82_9EUKA2.500e-750.00Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
A0A812WZR4_SYMMI3.270e-752.63Hypothetical protein (Fragment) n=1 Tax=Symbiodini... [more]
A0A7S3L3K8_9STRA3.400e-751.11Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A7R9WMC4_9STRA4.130e-753.33Hypothetical protein (Fragment) n=1 Tax=Craspedost... [more]
A0A1Z5J633_FISSO8.760e-748.89Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1contigH-akashiwo_Contig1:9364835..9365008 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog946362.XP_004991686.1
PFAMsThioredoxin,Thioredoxin_6
Model size174
Max annot lvl2759|Eukaryota
KEGG koko:K09580,ko:K14816
KEGG Pathwayko04141,map04141
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue5.03e-07
EggNOG OGsCOG0526@1|root,KOG0190@2759|Eukaryota
EC5.3.4.1
Descriptionintramolecular oxidoreductase activity, transposing S-S bonds
Cds size174
COG categoryCO
BRITEko00000,ko00001,ko01000,ko03009,ko03110,ko04131,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387038.958015-CDS-H-akashiwo_Contig1:9364834..93650081681387038.958015-CDS-H-akashiwo_Contig1:9364834..9365008Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1 9364835..9365008 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1.226.1prot_H-akashiwo_Contig1.226.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1 9364835..9365008 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1.226.1

>prot_H-akashiwo_Contig1.226.1 ID=prot_H-akashiwo_Contig1.226.1|Name=mRNA_H-akashiwo_Contig1.226.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=58bp
RWGDFEDLVTALQQTLTKETGPHSQRKSSLRHAAWVEEAGGRVRGRNHTY
DVSFWPD*
back to top

mRNA from alignment at H-akashiwo_Contig1:9364835..9365008+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1.226.1 ID=mRNA_H-akashiwo_Contig1.226.1|Name=mRNA_H-akashiwo_Contig1.226.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=174bp|location=Sequence derived from alignment at H-akashiwo_Contig1:9364835..9365008+ (Heterosigma akashiwo CCMP452)
CGGTGGGGGGACTTTGAGGACCTGGTGACGGCGCTGCAGCAGACGCTGAC
CAAGGAGACGGGCCCGCACAGCCAGCGCAAGAGCTCGCTGCGGCACGCGG
CCTGGGTGGAGGAGGCGGGGGGCCGAGTGCGCGGCCGCAACCACACCTAC
GACGTGAGCTTTTGGCCGGATTAG
back to top

Coding sequence (CDS) from alignment at H-akashiwo_Contig1:9364835..9365008+

>mRNA_H-akashiwo_Contig1.226.1 ID=mRNA_H-akashiwo_Contig1.226.1|Name=mRNA_H-akashiwo_Contig1.226.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=174bp|location=Sequence derived from alignment at H-akashiwo_Contig1:9364835..9365008+ (Heterosigma akashiwo CCMP452)
CGGTGGGGGGACTTTGAGGACCTGGTGACGGCGCTGCAGCAGACGCTGAC
CAAGGAGACGGGCCCGCACAGCCAGCGCAAGAGCTCGCTGCGGCACGCGG
CCTGGGTGGAGGAGGCGGGGGGCCGAGTGCGCGGCCGCAACCACACCTAC
GACGTGAGCTTTTGGCCGGATTAG
back to top