mRNA_H-akashiwo_Contig1.225.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1.225.1
Unique NamemRNA_H-akashiwo_Contig1.225.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1.225.1 vs. uniprot
Match: A0A6A7G369_9CRUS (EF-Hand 1, calcium-binding site (Fragment) n=1 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A6A7G369_9CRUS)

HSP 1 Score: 152 bits (383), Expect = 7.080e-41
Identity = 71/87 (81.61%), Postives = 78/87 (89.66%), Query Frame = 2
Query:    2 NLQPKHKKMLNLAHDWLRSYLPHVLQKIDRVSFGIFNKGDYDRAIKADPHMPRSRAKLAVPFVGKDVPSRSSEFAHPDVIIGLTVLA 262
            NL  KHKKMLNL+ DWLRS+LPHVLQKIDRVSFGI +K DY  A++ DPHMPR+RAKL VPFVGKDVPSRSSEFAHPD+IIGLTVLA
Sbjct:  123 NLSQKHKKMLNLSRDWLRSFLPHVLQKIDRVSFGILSKSDYRNAMRMDPHMPRTRAKLGVPFVGKDVPSRSSEFAHPDIIIGLTVLA 209          
BLAST of mRNA_H-akashiwo_Contig1.225.1 vs. uniprot
Match: A0A0M0J568_9EUKA (Nxn protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0J568_9EUKA)

HSP 1 Score: 137 bits (345), Expect = 9.480e-36
Identity = 63/86 (73.26%), Postives = 75/86 (87.21%), Query Frame = 2
Query:    5 LQPKHKKMLNLAHDWLRSYLPHVLQKIDRVSFGIFNKGDYDRAIKADPHMPRSRAKLAVPFVGKDVPSRSSEFAHPDVIIGLTVLA 262
            L PK  KMLNLA +WLR++LPH LQKIDRVSFG+ +  +Y+R +K +PHMPRSR KLA+PFVGKDVPSR+SEFAHPD+IIGLTVLA
Sbjct:  469 LDPKAFKMLNLATEWLRTFLPHTLQKIDRVSFGLLSTHEYERLLKTEPHMPRSRFKLAIPFVGKDVPSRASEFAHPDIIIGLTVLA 554          
BLAST of mRNA_H-akashiwo_Contig1.225.1 vs. uniprot
Match: F2UMB7_SALR5 (Uncharacterized protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2UMB7_SALR5)

HSP 1 Score: 135 bits (341), Expect = 3.330e-35
Identity = 64/86 (74.42%), Postives = 71/86 (82.56%), Query Frame = 2
Query:    2 NLQPKHKKMLNLAHDWLRSYLPHVLQKIDRVSFGIFNKGDYDRAIKADPHMPRSRAKLAVPFVGKDVPSRSSEFAHPDVIIGLTVL 259
            NL  K  K+LNL HDWLRSYLPH LQKIDRVSFGI N+ D   A++ DP MP SR KLA+PFVGKDVPSRSSEFAHPDVIIGL++L
Sbjct: 4564 NLGAKQMKLLNLTHDWLRSYLPHCLQKIDRVSFGIMNEADKKHALEVDPRMPLSRFKLAIPFVGKDVPSRSSEFAHPDVIIGLSIL 4649          
BLAST of mRNA_H-akashiwo_Contig1.225.1 vs. uniprot
Match: A0A7R9U8W2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U8W2_9STRA)

HSP 1 Score: 133 bits (335), Expect = 2.140e-34
Identity = 60/84 (71.43%), Postives = 75/84 (89.29%), Query Frame = 2
Query:   11 PKHKKMLNLAHDWLRSYLPHVLQKIDRVSFGIFNKGDYDRAIKADPHMPRSRAKLAVPFVGKDVPSRSSEFAHPDVIIGLTVLA 262
            P HKK+LNL+HDWLR++LPHV+ KI+RVSFG+ ++   + A++ DP++PRSR KLAVPF+GKDVPSRSSEFAHPDVIIGLTVLA
Sbjct: 1302 PLHKKLLNLSHDWLRTFLPHVMAKINRVSFGLLSEEQCETALQEDPYVPRSRLKLAVPFIGKDVPSRSSEFAHPDVIIGLTVLA 1385          
BLAST of mRNA_H-akashiwo_Contig1.225.1 vs. uniprot
Match: D8LRI4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRI4_ECTSI)

HSP 1 Score: 132 bits (333), Expect = 4.000e-34
Identity = 61/86 (70.93%), Postives = 71/86 (82.56%), Query Frame = 2
Query:    5 LQPKHKKMLNLAHDWLRSYLPHVLQKIDRVSFGIFNKGDYDRAIKADPHMPRSRAKLAVPFVGKDVPSRSSEFAHPDVIIGLTVLA 262
            L   H KMLNL HDWLRS+LPHVL KIDRVSFG+    D  RA++ADP MP+SR  LAVPFVGKDVPSR+SEF+HPDV++GLT+LA
Sbjct: 3290 LSDDHIKMLNLTHDWLRSFLPHVLTKIDRVSFGLLTPADLKRALEADPKMPKSRKLLAVPFVGKDVPSRASEFSHPDVVVGLTILA 3375          
BLAST of mRNA_H-akashiwo_Contig1.225.1 vs. uniprot
Match: A0A7S1MDA9_NEODS (Hypothetical protein (Fragment) n=1 Tax=Neobodo designis TaxID=312471 RepID=A0A7S1MDA9_NEODS)

HSP 1 Score: 125 bits (315), Expect = 4.750e-34
Identity = 58/87 (66.67%), Postives = 70/87 (80.46%), Query Frame = 2
Query:    2 NLQPKHKKMLNLAHDWLRSYLPHVLQKIDRVSFGIFNKGDYDRAIKADPHMPRSRAKLAVPFVGKDVPSRSSEFAHPDVIIGLTVLA 262
            +L   H KMLN AHDWL S+LPHV+QKIDRVSFGI N  D  RA +  P+MPRSR   A+PF+GKD+PS+SSEFAHPDV+IGL++LA
Sbjct:    1 SLDADHVKMLNFAHDWLSSFLPHVMQKIDRVSFGIMNADDIRRAREEHPNMPRSRFVTAIPFIGKDLPSQSSEFAHPDVVIGLSILA 87          
BLAST of mRNA_H-akashiwo_Contig1.225.1 vs. uniprot
Match: A0A7S2JLE7_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2JLE7_9EUKA)

HSP 1 Score: 124 bits (310), Expect = 5.190e-34
Identity = 55/86 (63.95%), Postives = 73/86 (84.88%), Query Frame = 2
Query:    5 LQPKHKKMLNLAHDWLRSYLPHVLQKIDRVSFGIFNKGDYDRAIKADPHMPRSRAKLAVPFVGKDVPSRSSEFAHPDVIIGLTVLA 262
            L  K  K+LNL  +W+R+YLP  LQKIDRV+FG+ ++ +Y+R  + +PHMPRSR+KLA+PFVGKDVPSR+SEFAHPD+IIGL++LA
Sbjct:   21 LDIKSFKLLNLTKEWVRTYLPFCLQKIDRVTFGLLSEDEYERLKETEPHMPRSRSKLAIPFVGKDVPSRASEFAHPDIIIGLSILA 106          
BLAST of mRNA_H-akashiwo_Contig1.225.1 vs. uniprot
Match: A0A3P3YPG6_PLABS (Uncharacterized protein n=2 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A3P3YPG6_PLABS)

HSP 1 Score: 132 bits (331), Expect = 7.430e-34
Identity = 62/87 (71.26%), Postives = 74/87 (85.06%), Query Frame = 2
Query:    2 NLQPKHKKMLNLAHDWLRSYLPHVLQKIDRVSFGIFNKGDYDRAIKADPHMPRSRAKLAVPFVGKDVPSRSSEFAHPDVIIGLTVLA 262
            +L  +H+KMLNL+ DWL ++LPHV+ KIDRVSFG+ +  D+ RAI  DP MPR+RAKLAVPFVGKD PSRSSEFAHPDVI+GLTVLA
Sbjct: 2867 DLPVQHRKMLNLSKDWLNTFLPHVIAKIDRVSFGLLSDDDFARAIAVDPLMPRTRAKLAVPFVGKDSPSRSSEFAHPDVILGLTVLA 2953          
BLAST of mRNA_H-akashiwo_Contig1.225.1 vs. uniprot
Match: A0A7S0DF82_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DF82_9EUKA)

HSP 1 Score: 131 bits (330), Expect = 1.020e-33
Identity = 60/87 (68.97%), Postives = 72/87 (82.76%), Query Frame = 2
Query:    2 NLQPKHKKMLNLAHDWLRSYLPHVLQKIDRVSFGIFNKGDYDRAIKADPHMPRSRAKLAVPFVGKDVPSRSSEFAHPDVIIGLTVLA 262
            NL   H +M++LA DW  SYLPHV+QKI+RV+FGI N+ D  RAIK DPHMP++R +LA+PFVGKD PS SSEFAHPD+IIGLTVLA
Sbjct: 3833 NLDAGHLQMISLARDWCTSYLPHVMQKINRVTFGILNETDIQRAIKRDPHMPKTRVRLAIPFVGKDKPSESSEFAHPDIIIGLTVLA 3919          
BLAST of mRNA_H-akashiwo_Contig1.225.1 vs. uniprot
Match: A0A7S4RRX4_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RRX4_9STRA)

HSP 1 Score: 130 bits (328), Expect = 1.870e-33
Identity = 60/82 (73.17%), Postives = 70/82 (85.37%), Query Frame = 2
Query:   17 HKKMLNLAHDWLRSYLPHVLQKIDRVSFGIFNKGDYDRAIKADPHMPRSRAKLAVPFVGKDVPSRSSEFAHPDVIIGLTVLA 262
            HKKMLNL H WLR++LPH L KI+RVSFG+ N  D  +A+  DP++PRSR KLAVPFVGKDVPS+SSEFAHPDVIIG+TVLA
Sbjct:  298 HKKMLNLCHSWLRTFLPHCLSKINRVSFGLLNSDDCQKALADDPNVPRSRLKLAVPFVGKDVPSKSSEFAHPDVIIGMTVLA 379          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1.225.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6A7G369_9CRUS7.080e-4181.61EF-Hand 1, calcium-binding site (Fragment) n=1 Tax... [more]
A0A0M0J568_9EUKA9.480e-3673.26Nxn protein n=1 Tax=Chrysochromulina tobinii TaxID... [more]
F2UMB7_SALR53.330e-3574.42Uncharacterized protein n=1 Tax=Salpingoeca rosett... [more]
A0A7R9U8W2_9STRA2.140e-3471.43Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
D8LRI4_ECTSI4.000e-3470.93Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S1MDA9_NEODS4.750e-3466.67Hypothetical protein (Fragment) n=1 Tax=Neobodo de... [more]
A0A7S2JLE7_9EUKA5.190e-3463.95Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
A0A3P3YPG6_PLABS7.430e-3471.26Uncharacterized protein n=2 Tax=Plasmodiophora bra... [more]
A0A7S0DF82_9EUKA1.020e-3368.97Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
A0A7S4RRX4_9STRA1.870e-3373.17Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1contigH-akashiwo_Contig1:9363229..9364078 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog946362.XP_004989589.1
Model size264
Max annot lvl33154|Opisthokonta
Hectar predicted targeting categoryother localisation
Exons2
Evalue3.01e-34
EggNOG OGs28MX6@1|root,2QUFK@2759|Eukaryota,3AM6Q@33154|Opisthokonta
Cds size237
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387038.9158852-UTR-H-akashiwo_Contig1:9363228..93632531681387038.9158852-UTR-H-akashiwo_Contig1:9363228..9363253Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1 9363229..9363253 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387038.9244266-CDS-H-akashiwo_Contig1:9363253..93633871681387038.9244266-CDS-H-akashiwo_Contig1:9363253..9363387Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1 9363254..9363387 +
1681387038.932277-CDS-H-akashiwo_Contig1:9363975..93640781681387038.932277-CDS-H-akashiwo_Contig1:9363975..9364078Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1 9363976..9364078 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1.225.1prot_H-akashiwo_Contig1.225.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1 9363254..9364078 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1.225.1

>prot_H-akashiwo_Contig1.225.1 ID=prot_H-akashiwo_Contig1.225.1|Name=mRNA_H-akashiwo_Contig1.225.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=79bp
MLNLAHDWLRSYLPHVLQKIDRVSFGIFNKGDYDRAIKADPHMPRSRAKL
AVPFVGKDVPSRSSEFAHPDVIIGLTVLA
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mRNA from alignment at H-akashiwo_Contig1:9363229..9364078+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1.225.1 ID=mRNA_H-akashiwo_Contig1.225.1|Name=mRNA_H-akashiwo_Contig1.225.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=850bp|location=Sequence derived from alignment at H-akashiwo_Contig1:9363229..9364078+ (Heterosigma akashiwo CCMP452)
CAACCTGCAGCCCAAGCACAAGAAGATGCTTAATCTGGCGCACGACTGGC TGCGCAGCTACCTGCCGCACGTGCTGCAGAAGATCGACCGCGTGTCCTTC GGCATCTTCAACAAGGGCGACTACGACCGGGCGATCAAGGCCGACCCCCA CATGCCAAGGTGCGCCCCGCGCTCGGTTGTGGAGAGGCTGTTCAGTGGGG CGGTAACTTACGTATAGGGGCCCCTTTGACTGGAGTGACCCCCCCCGGGC CAGCACAGCCCGACTCCCTGTTGTTTTTTGCTCAGGTGCATGTGCGAGCA CCAACTCTATATATCGAGGTCCCCCCCACTAGCTCACGTACACAATTTCT CAGCCCTCGTCATCTTGCCCTACTCTGTGGAGAACCATTCTTGTCTAGAG AGAAGGGAAGGAAAGTCGTGAAGCAAGATTACATTGGCCTCCGCAACTAT GATGCATCATACTTCCTCCCTTATTGATGACCAAGTTCCTTGACATACTT CTGTACAAGAAGCGCTGTGTATATAGATGGACGAGTTTCTTGGCATACTA CAGCACTGAGAGAAATGTAGATGAAATTTGAATGTCGATGTGAGGAGAAA CGATTGTGATGGCGTTAAGATTCATTGGCTTCCGAAATTCGTGACACCGA GAGGAGCACTTTGCATGTGATACAAACGCAGAACATATAATATGTGAGAC ATCTGTACATACTCACCCGCACGGCTCTTGCCCGGCGGGCGGCGCAGGTC GCGGGCGAAGCTGGCGGTGCCCTTCGTGGGCAAGGACGTGCCCAGCCGCT CGTCCGAGTTCGCCCACCCGGACGTGATCATCGGCCTCACCGTCTTGGCC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1:9363229..9364078+

>mRNA_H-akashiwo_Contig1.225.1 ID=mRNA_H-akashiwo_Contig1.225.1|Name=mRNA_H-akashiwo_Contig1.225.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=237bp|location=Sequence derived from alignment at H-akashiwo_Contig1:9363229..9364078+ (Heterosigma akashiwo CCMP452)
ATGCTTAATCTGGCGCACGACTGGCTGCGCAGCTACCTGCCGCACGTGCT
GCAGAAGATCGACCGCGTGTCCTTCGGCATCTTCAACAAGGGCGACTACG
ACCGGGCGATCAAGGCCGACCCCCACATGCCAAGGTCGCGGGCGAAGCTG
GCGGTGCCCTTCGTGGGCAAGGACGTGCCCAGCCGCTCGTCCGAGTTCGC
CCACCCGGACGTGATCATCGGCCTCACCGTCTTGGCC
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