mRNA_H-akashiwo_Contig1.224.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1.224.1
Unique NamemRNA_H-akashiwo_Contig1.224.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1.224.1 vs. uniprot
Match: A0A3P3YPG6_PLABS (Uncharacterized protein n=2 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A3P3YPG6_PLABS)

HSP 1 Score: 67.0 bits (162), Expect = 1.030e-11
Identity = 34/49 (69.39%), Postives = 39/49 (79.59%), Query Frame = 1
Query:    1 VGLVRDIVGSIQQGTSLVKQMIMGGGKTTVISPLIVTMLDDGRSLVTQV 147
            V LVR+ +GS+ QG SLVKQMIMG GKTTV+ PL+  ML DGR LVTQV
Sbjct: 2571 VQLVREFMGSLGQGASLVKQMIMGAGKTTVVGPLLALMLGDGRGLVTQV 2619          
BLAST of mRNA_H-akashiwo_Contig1.224.1 vs. uniprot
Match: F2UMB7_SALR5 (Uncharacterized protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2UMB7_SALR5)

HSP 1 Score: 65.1 bits (157), Expect = 4.910e-11
Identity = 33/49 (67.35%), Postives = 40/49 (81.63%), Query Frame = 1
Query:    1 VGLVRDIVGSIQQGTSLVKQMIMGGGKTTVISPLIVTMLDDGRSLVTQV 147
            V LVRDIVG++Q+G S+VKQMIMG GKTTVI PL+  ML DG++ V QV
Sbjct: 4261 VELVRDIVGALQRGESIVKQMIMGAGKTTVIGPLVCLMLADGKAFVGQV 4309          
BLAST of mRNA_H-akashiwo_Contig1.224.1 vs. uniprot
Match: A0A7S1J653_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1J653_9EUGL)

HSP 1 Score: 62.0 bits (149), Expect = 5.980e-10
Identity = 31/49 (63.27%), Postives = 39/49 (79.59%), Query Frame = 1
Query:    1 VGLVRDIVGSIQQGTSLVKQMIMGGGKTTVISPLIVTMLDDGRSLVTQV 147
            V LV + +GS++QG SLVKQMIMG GKTTV+SPL+  ML DG+ LV +V
Sbjct: 2740 VQLVHEFMGSLKQGQSLVKQMIMGAGKTTVVSPLLALMLADGQGLVMEV 2788          
BLAST of mRNA_H-akashiwo_Contig1.224.1 vs. uniprot
Match: A0A8J5XT57_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XT57_DIALT)

HSP 1 Score: 60.1 bits (144), Expect = 2.860e-9
Identity = 29/48 (60.42%), Postives = 37/48 (77.08%), Query Frame = 1
Query:    1 VGLVRDIVGSIQQGTSLVKQMIMGGGKTTVISPLIVTMLDDGRSLVTQ 144
            V L+ + VG ++ G  LVKQM+MGGGKTTVISP++  ML DG+SLV Q
Sbjct: 3560 VQLIAEFVGKVRAGEPLVKQMLMGGGKTTVISPILSLMLGDGKSLVVQ 3607          
BLAST of mRNA_H-akashiwo_Contig1.224.1 vs. uniprot
Match: A0A0M0J568_9EUKA (Nxn protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0J568_9EUKA)

HSP 1 Score: 59.7 bits (143), Expect = 3.910e-9
Identity = 28/48 (58.33%), Postives = 37/48 (77.08%), Query Frame = 1
Query:    1 VGLVRDIVGSIQQGTSLVKQMIMGGGKTTVISPLIVTMLDDGRSLVTQ 144
            V LVR+ V +++ G  LVKQM+MGGGKTTV+ P++  ML DGR+LV Q
Sbjct:  125 VALVREFVDAVRGGRPLVKQMLMGGGKTTVVGPMLALMLGDGRTLVVQ 172          
BLAST of mRNA_H-akashiwo_Contig1.224.1 vs. uniprot
Match: A0A7S0LY42_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0LY42_9CRYP)

HSP 1 Score: 59.7 bits (143), Expect = 3.910e-9
Identity = 30/49 (61.22%), Postives = 38/49 (77.55%), Query Frame = 1
Query:    1 VGLVRDIVGSIQQGTSLVKQMIMGGGKTTVISPLIVTMLDDGRSLVTQV 147
            V +VRD VG I++G+S VKQMIMG GKTTV++PL+  ML D +SLV  V
Sbjct: 1250 VEIVRDFVGHIKEGSSKVKQMIMGAGKTTVVAPLLALMLADSKSLVLSV 1298          
BLAST of mRNA_H-akashiwo_Contig1.224.1 vs. uniprot
Match: A0A7S2JMD4_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2JMD4_9EUKA)

HSP 1 Score: 59.3 bits (142), Expect = 5.120e-9
Identity = 28/48 (58.33%), Postives = 35/48 (72.92%), Query Frame = 1
Query:    1 VGLVRDIVGSIQQGTSLVKQMIMGGGKTTVISPLIVTMLDDGRSLVTQ 144
            V LVR+ + ++Q G  LVKQM+MGGGKTTV+ PL+  ML DG  LV Q
Sbjct:   67 VQLVREFIAAVQSGKPLVKQMLMGGGKTTVVGPLLTLMLGDGERLVVQ 114          
BLAST of mRNA_H-akashiwo_Contig1.224.1 vs. uniprot
Match: A0A7S4CT20_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4CT20_9EUGL)

HSP 1 Score: 59.3 bits (142), Expect = 5.340e-9
Identity = 30/49 (61.22%), Postives = 37/49 (75.51%), Query Frame = 1
Query:    1 VGLVRDIVGSIQQGTSLVKQMIMGGGKTTVISPLIVTMLDDGRSLVTQV 147
            V LVR+ + S++ G SLVKQMIMG GKTTV+SPL+  ML DG  LV +V
Sbjct:  657 VALVREFMSSLRSGKSLVKQMIMGAGKTTVVSPLLALMLADGDGLVMEV 705          
BLAST of mRNA_H-akashiwo_Contig1.224.1 vs. uniprot
Match: A0A7S4FNZ6_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4FNZ6_9EUGL)

HSP 1 Score: 59.3 bits (142), Expect = 5.350e-9
Identity = 30/49 (61.22%), Postives = 37/49 (75.51%), Query Frame = 1
Query:    1 VGLVRDIVGSIQQGTSLVKQMIMGGGKTTVISPLIVTMLDDGRSLVTQV 147
            V LVR+ + S++ G SLVKQMIMG GKTTV+SPL+  ML DG  LV +V
Sbjct: 2754 VALVREFMSSLRSGKSLVKQMIMGAGKTTVVSPLLALMLADGDGLVMEV 2802          
BLAST of mRNA_H-akashiwo_Contig1.224.1 vs. uniprot
Match: A0A7S0NWA7_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0NWA7_9EUKA)

HSP 1 Score: 58.9 bits (141), Expect = 7.310e-9
Identity = 28/48 (58.33%), Postives = 35/48 (72.92%), Query Frame = 1
Query:    1 VGLVRDIVGSIQQGTSLVKQMIMGGGKTTVISPLIVTMLDDGRSLVTQ 144
            V LV + VG++  G  LVKQM+MGGGKTTV+SPL+  +L DG  LV Q
Sbjct:  701 VQLVEEFVGAVHSGVPLVKQMLMGGGKTTVVSPLLALLLGDGERLVVQ 748          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1.224.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3P3YPG6_PLABS1.030e-1169.39Uncharacterized protein n=2 Tax=Plasmodiophora bra... [more]
F2UMB7_SALR54.910e-1167.35Uncharacterized protein n=1 Tax=Salpingoeca rosett... [more]
A0A7S1J653_9EUGL5.980e-1063.27Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A8J5XT57_DIALT2.860e-960.42Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
A0A0M0J568_9EUKA3.910e-958.33Nxn protein n=1 Tax=Chrysochromulina tobinii TaxID... [more]
A0A7S0LY42_9CRYP3.910e-961.22Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
A0A7S2JMD4_9EUKA5.120e-958.33Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
A0A7S4CT20_9EUGL5.340e-961.22Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
A0A7S4FNZ6_9EUGL5.350e-961.22Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
A0A7S0NWA7_9EUKA7.310e-958.33Hypothetical protein (Fragment) n=1 Tax=Calcidiscu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1contigH-akashiwo_Contig1:9359215..9359361 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog946362.XP_004989589.1
Model size147
Max annot lvl33154|Opisthokonta
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue8.04e-12
EggNOG OGs28MX6@1|root,2QUFK@2759|Eukaryota,3AM6Q@33154|Opisthokonta
Cds size147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387038.8864083-CDS-H-akashiwo_Contig1:9359214..93593611681387038.8864083-CDS-H-akashiwo_Contig1:9359214..9359361Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1 9359215..9359361 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1.224.1prot_H-akashiwo_Contig1.224.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1 9359215..9359361 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1.224.1

>prot_H-akashiwo_Contig1.224.1 ID=prot_H-akashiwo_Contig1.224.1|Name=mRNA_H-akashiwo_Contig1.224.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=49bp
VGLVRDIVGSIQQGTSLVKQMIMGGGKTTVISPLIVTMLDDGRSLVTQV
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mRNA from alignment at H-akashiwo_Contig1:9359215..9359361+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1.224.1 ID=mRNA_H-akashiwo_Contig1.224.1|Name=mRNA_H-akashiwo_Contig1.224.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=147bp|location=Sequence derived from alignment at H-akashiwo_Contig1:9359215..9359361+ (Heterosigma akashiwo CCMP452)
GTGGGCTTGGTGCGTGACATCGTGGGCAGCATTCAGCAGGGCACCTCCCT GGTCAAGCAGATGATCATGGGCGGCGGCAAGACCACGGTCATCTCCCCAC TCATCGTCACCATGTTGGATGACGGCCGCAGTCTTGTGACCCAGGTG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1:9359215..9359361+

>mRNA_H-akashiwo_Contig1.224.1 ID=mRNA_H-akashiwo_Contig1.224.1|Name=mRNA_H-akashiwo_Contig1.224.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=147bp|location=Sequence derived from alignment at H-akashiwo_Contig1:9359215..9359361+ (Heterosigma akashiwo CCMP452)
GTGGGCTTGGTGCGTGACATCGTGGGCAGCATTCAGCAGGGCACCTCCCT
GGTCAAGCAGATGATCATGGGCGGCGGCAAGACCACGGTCATCTCCCCAC
TCATCGTCACCATGTTGGATGACGGCCGCAGTCTTGTGACCCAGGTG
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