mRNA_H-akashiwo_Contig1.219.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1.219.1
Unique NamemRNA_H-akashiwo_Contig1.219.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1.219.1 vs. uniprot
Match: A0A0A9PXC8_ARUDO (Uncharacterized protein n=1 Tax=Arundo donax TaxID=35708 RepID=A0A0A9PXC8_ARUDO)

HSP 1 Score: 65.1 bits (157), Expect = 3.670e-9
Identity = 35/69 (50.72%), Postives = 42/69 (60.87%), Query Frame = -2 
Query:  335 YYRSPLCSGVRPTGLQLEQFM*PKPLQVLQVHLSRMLPPFLSMPVPLQTAQLVNPSPMHILHPFFPFIS 541
            ++RSPLCSGVRP   QL Q + P P Q    HLS+MLP FL +PVPL       P P+H+L P    IS
Sbjct:   24 FHRSPLCSGVRPPLPQLGQLLSPNPWQSKHFHLSKMLPFFLFLPVPLHPGHSTAPFPLHVLQPAATIIS 92
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1.219.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0A9PXC8_ARUDO3.670e-950.72Uncharacterized protein n=1 Tax=Arundo donax TaxID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1contigH-akashiwo_Contig1:9191165..9192801 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog71139.XP_010062437.1
Model size794
Max annot lvl35493|Streptophyta
Hectar predicted targeting categorysignal peptide
Exons2
Evalue2.65e-11
EggNOG OGs2BW0D@1|root,2S3MJ@2759|Eukaryota,37W0A@33090|Viridiplantae,3GK9K@35493|Streptophyta
Cds size429
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387038.7588673-UTR-H-akashiwo_Contig1:9191164..91914191681387038.7588673-UTR-H-akashiwo_Contig1:9191164..9191419Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1 9191165..9191419 -
1681387038.7882454-UTR-H-akashiwo_Contig1:9192691..91928011681387038.7882454-UTR-H-akashiwo_Contig1:9192691..9192801Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1 9192692..9192801 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387038.7709954-CDS-H-akashiwo_Contig1:9191419..91915471681387038.7709954-CDS-H-akashiwo_Contig1:9191419..9191547Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1 9191420..9191547 -
1681387038.779627-CDS-H-akashiwo_Contig1:9192390..91926911681387038.779627-CDS-H-akashiwo_Contig1:9192390..9192691Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1 9192391..9192691 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1.219.1prot_H-akashiwo_Contig1.219.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1 9191420..9192691 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1.219.1

>prot_H-akashiwo_Contig1.219.1 ID=prot_H-akashiwo_Contig1.219.1|Name=mRNA_H-akashiwo_Contig1.219.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=143bp
MMGFVYWLLAALTLLCLSVTAENKKGSFALGLSKMSPTAGFLIQHGNTSP
RPTSEVYFFGSGESTQKKGSGSSDGDMKGKKGCKICMGEGFTNCAVCKGT
GIDKKGGSILERWTCKTCKGFGYINCSNCNPVGLTPEQRGER*
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mRNA from alignment at H-akashiwo_Contig1:9191165..9192801-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1.219.1 ID=mRNA_H-akashiwo_Contig1.219.1|Name=mRNA_H-akashiwo_Contig1.219.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1637bp|location=Sequence derived from alignment at H-akashiwo_Contig1:9191165..9192801- (Heterosigma akashiwo CCMP452)
GCCCTAAAAGTGCGTATGTACGTTTTGAAGTTGCCGTGGCTGGGGTGGTT
AGAGACCTTTTCATATATTTGAGTGGCAACACGACTGTTCTTTCAGTTGA
TCTCTCAAAGATGATGGGCTTCGTTTATTGGCTTCTAGCTGCACTAACGT
TGTTATGTCTTTCGGTGACAGCAGAAAATAAAAAAGGCTCTTTCGCTCTT
GGTCTTTCTAAGATGAGTCCCACTGCTGGGTTTCTGATTCAGCACGGTAA
CACTTCACCTCGTCCTACTTCCGAGGTGTATTTTTTTGGCTCCGGTGAAA
GCACCCAAAAGAAAGGCTCCGGGTCTTCTGATGGAGATATGAAAGGAAAG
AAAGGGTGTAAAATATGCATGGGAGAAGGGTTTACCAACTGTGCTGTCTG
CAAAGGAACAGGTATGCACACTACTGCACCAAGTTAAATTTTATTTCTCA
GAGGACATTAAATAATGTATGTTGCGACTACATACATATCATTACTTCCC
ATTGAGATGGAGTATGGTATAATCCAAAGAGATTTTTAATGATTGAATAT
TTCAGGTCGCTTGGTAGCGCAATCTGAATTAGTATACATAGGCTAGCTTA
CAAGTGTATCATTGTCTGAGTCAACTTTGGATAGGATTTAATCATTGAAT
AAACCCTGTATTTAGCCATTCATCCAAATTGAGGGTTTGCGGGTGGAGGC
CGTGGCTGCTCTTCTTCTATGCTACTACCTATTATTTAAATGAAACTGTT
TTTTCCATCATGCCCAAGAGCCACAAGTCAGTTGTCCAAAAAACAAGTAG
GACTCCACAAGATCTTTTCCAACCGGAATAAGTAAAAGGGTAACGCGGAA
TACTACACTATTGTGAGCTCATCAAGGCGGTGGATCTGCGGATCAGGGGC
TTCAGAAAGAGGTGGAGGAGCTCAGGGTTCGAGGATGGCGAGGGGATTGC
CGTTTTCTTTCAGAGATAGTGGGGTGTGCTGTATTCGATGTTTTGTATTA
TTGATTTTGGTTTGGGGATTTCGTGTTTAGGTTTTAGTATATATTACCAC
AGGGACATCTGCATAGATGCAAGGTGTAGGTTGGTTTGGTTAAATTTAAC
TCTCCTATGTATATATATATATATATATATATTATTTGTAATAGTGGTGA
CGCCGCTTGGTTTATGGGCAGACCCACCGGCCCAGACAAGGCTGAACTGC
TGGTGCCCACCACCAATCATTAGTGCACATGTCATTACAATATTTTTTGT
TCAGGCATTGATAAAAAGGGAGGGAGCATTCTGGAAAGGTGGACTTGCAA
AACTTGTAAAGGTTTTGGCTACATAAATTGTTCCAACTGCAATCCAGTTG
GCCTCACTCCAGAGCAGAGGGGAGAACGATAATAGTTGAATTGAGTTTCT
TACAAACAGTATTAAGACTTGTGGACAATCATAAAAAAAAAAAAACTTTA
TGTTTTGTTTTCTTCTATTTATTTGTTGTTGGGCTTTTTTAGTAGCTGGC
TGGCTTTTTTTTTTTACTAACTAGTACAGGCAGCCTAATAGTAGCTTGTT
AGTTTTTGCCAAAAATGCTTCCCACAGCAAGGAGATATTCTGCTGAGTGG
GATGGATATATTCATCATTATTATTATTTAATTTATT
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1:9191165..9192801-

>mRNA_H-akashiwo_Contig1.219.1 ID=mRNA_H-akashiwo_Contig1.219.1|Name=mRNA_H-akashiwo_Contig1.219.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=429bp|location=Sequence derived from alignment at H-akashiwo_Contig1:9191165..9192801- (Heterosigma akashiwo CCMP452)
ATGATGGGCTTCGTTTATTGGCTTCTAGCTGCACTAACGTTGTTATGTCT
TTCGGTGACAGCAGAAAATAAAAAAGGCTCTTTCGCTCTTGGTCTTTCTA
AGATGAGTCCCACTGCTGGGTTTCTGATTCAGCACGGTAACACTTCACCT
CGTCCTACTTCCGAGGTGTATTTTTTTGGCTCCGGTGAAAGCACCCAAAA
GAAAGGCTCCGGGTCTTCTGATGGAGATATGAAAGGAAAGAAAGGGTGTA
AAATATGCATGGGAGAAGGGTTTACCAACTGTGCTGTCTGCAAAGGAACA
GGCATTGATAAAAAGGGAGGGAGCATTCTGGAAAGGTGGACTTGCAAAAC
TTGTAAAGGTTTTGGCTACATAAATTGTTCCAACTGCAATCCAGTTGGCC
TCACTCCAGAGCAGAGGGGAGAACGATAA
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