mRNA_H-akashiwo_Contig1.21.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1.21.1
Unique NamemRNA_H-akashiwo_Contig1.21.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1.21.1 vs. uniprot
Match: A0A7S3XX29_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XX29_HETAK)

HSP 1 Score: 120 bits (302), Expect = 4.590e-33
Identity = 71/72 (98.61%), Postives = 71/72 (98.61%), Query Frame = 1 
Query:   34 MKLSLYCMLIFTVALAAVVDAFRPAVPRAATQRDFAGVRRAPRAVLLRAEGEGXXXXGKAPEAGAEPTTEVQ 249
            MKLSLYCMLIFTVALAAVVDAFRPAVPRAATQRDFAGVRRAPRAVLLRAEGEGXXXX KAPEAGAEPTTEVQ
Sbjct:    1 MKLSLYCMLIFTVALAAVVDAFRPAVPRAATQRDFAGVRRAPRAVLLRAEGEGXXXXXKAPEAGAEPTTEVQ 72
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1.21.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3XX29_HETAK4.590e-3398.61Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1contigH-akashiwo_Contig1:1652534..1658952 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size250
Hectar predicted targeting categorychloroplast
Exons4
Cds size249
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387028.9154832-CDS-H-akashiwo_Contig1:1652534..16525671681387028.9154832-CDS-H-akashiwo_Contig1:1652534..1652567Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1 1652535..1652567 -
1681387028.9234493-CDS-H-akashiwo_Contig1:1656942..16570151681387028.9234493-CDS-H-akashiwo_Contig1:1656942..1657015Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1 1656943..1657015 -
1681387028.9313238-CDS-H-akashiwo_Contig1:1657208..16572811681387028.9313238-CDS-H-akashiwo_Contig1:1657208..1657281Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1 1657209..1657281 -
1681387028.9394093-CDS-H-akashiwo_Contig1:1658882..16589521681387028.9394093-CDS-H-akashiwo_Contig1:1658882..1658952Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1 1658883..1658952 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1.21.1prot_H-akashiwo_Contig1.21.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1 1652535..1658952 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1.21.1

>prot_H-akashiwo_Contig1.21.1 ID=prot_H-akashiwo_Contig1.21.1|Name=mRNA_H-akashiwo_Contig1.21.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=83bp
FELETQSLEKTMKLSLYCMLIFTVALAAVVDAFRPAVPRAATQRDFAGVR
RAPRAVLLRAEGEGGGGGGKAPEAGAEPTTEVQ
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mRNA from alignment at H-akashiwo_Contig1:1652534..1658952-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1.21.1 ID=mRNA_H-akashiwo_Contig1.21.1|Name=mRNA_H-akashiwo_Contig1.21.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=6419bp|location=Sequence derived from alignment at H-akashiwo_Contig1:1652534..1658952- (Heterosigma akashiwo CCMP452)
TTTGAACTAGAGACCCAATCCTTGGAAAAGACCATGAAGCTCTCCCTGTA
CTGCATGCTCATCTTTACAGGTGGGCTGTGAGGGCGATGCAAGGGAGCAG
TTGTATATGCCCCCCTGCTCCTCCCACCCCAATGTCCATCAACTGTCGTG
ATGATATTATATTGCGTGGTGGTGGATAATAATGCAATCACCACGGGAAC
GAGTCGGCGAAATAGATCAAAGGAGTATTATTTGTTGCCTCTGATTGAGA
TATGATCCAAGCTGTGTGAAAGTCAAAAGCATATGATTAACAACATGTCA
TTGGTTATGTTGAAACGTGTCTGTTGTCTGCTGTTTACATCTTCGAAATT
CCACCATTTTCTCGTGTTATCTGTTCTTTAATTGAAATCAAGCAAAGGAT
CATCATTCACTCACTTGCTTCTCTAATTCATGTTAAAATGTTTCTGTGTA
CCTTGTACTTCTTCGAGCCATGTCGCCATTTCCCCTATAATCTGCGTTCC
GTTTCTCTCGCCGCTGTTGGCGATGCCACCACTTTTCCATATCATTTGTT
TAGCTTGCTTCAATCTGTCACAGAGCTGAGCCTCTCACACGTAAAAAGAA
ATATGCCAACTATAGTTGTAGGAAGCAGCTTCAAAACAAGATGAAGATGA
GTTGCAGCAGCAGTGGACCAGTTCTAGATTTTGTGTTTCACTTCGAACTA
AAGCGCTGCTGGGAAAATTATAATATCTTACTGACAAGCTGTGTTAATAA
AGACTAGCCACCAGCCTCGGCTGGTGGTTTGCCAGAAACAACGTTGTCAG
CAGATCTTGTACTGTTTTAAAAAACCTTTGATATGTCGCCTCTTTGGTAA
TGTAGAGCTGTACTCGCTGACGATGATGGAAGCTGCTTTTCTTCTGTTAA
AACCCAACACCTCAACAGCAATAGTAATAATTATTGAGGTGTTGGGTTTA
AACAGTGAGGTCGCTTCCATCATTAGCGAGTATAGCTCTACATTGCCAAA
GAGGCGACATGTCAAAGGTTTTTAAATCATTAATAAAAGATCTGATAATC
TTCATTTGGTTTATCTCACTGACAAGGCGTGTTGATGAAGGCCAGCTACC
GGCCTCGGCTGGTGGTATGCCAGAAAAAATGCTGTCCACGTCAAATCTCA
TATAATGATTTTAAAAACCTTTGATATGTCGCCTCTTTGGCAATGTAGAG
CTGCACTCGCTGATGATGGAAGCGGCTTTTCTGTTAAAACCCAACACCTC
AACAACAATAGTAATGGCGTGGGTTGCTATAAATGAAATGAGCTGAAGCC
TGTTTTTGTAGACTCCACCACACAGCCACCTCCTCCTATTAGAGTCTCTG
CCCGGATTGCAGCACGGACAGGGGGGCCACCACAGCACCGCGCCAACTGC
AGCACGCTCCAATATGCCACGGAGCTTGACTTCGCTCCCTTGAAATACAA
GAGGTCGCTCAGGGTCAGGCTACCAGGAGTATGGGACAATCTCAATCACG
ATGTCCTTCAAAAGCAACACATAGAGGAATTCATGCCAATCAGGAAGCAG
CTTCAAAATCAGATAAAGATGGGTGGTAGCAGCAGTGGATAAGTTCTGGG
TTATCATTTTTCACTTCATGTTAAAACGTAGAGGGGGGAAAAAATAATAA
ACAATGATAAATTAAAAACAGTGGCCCTCGCCGCCGTGGTCGACGCCTTT
CGGCCCGCGGTCCCACGCGCCGCCACGCAGCGGGACTTTGCCGGGTGGGT
TCCCCTTCGCACCTCTCCCTCTTCTCCCCAAGATCCCCCTTACACTTCTT
CCTCCTCTCCTTGGTGGGGAAGAGGCGGAGGTGTACGTTCTCCCTTGACA
CCTCTCCCTCTTCTCCCCGAGATCCCCTTTACACCTCTCCTTCTTCTCCC
CAAGATCACCTTCATCGCGCCCCCCCTCCCTCGTCAGTGTGCGGAGGGCG
CCGCGGGCCGTGCTATTGAGGGCGGAGGGTGAGGGCGGCGGCGGCGGCGG
CAAAGCCCCGGTGGGCCGTTCTTCCCCCTTCTTATCAGCGGCACTTTTTG
AACAGTTTCGAAGATGTACATAATGATGATGATGATGATTTCAATTTATT
TAAAAGGTCCAGCCGCTCGGATAACTACAAGGGCCCAAACCCCGGCCTGC
ACAAGCGGACGCTTCCACTTCTAGACCCCACTTCTTGTCTCCTGGTCACC
ACCAAAACTTGAGAAAAATGCTATTAGTCTCCTTCCCAGCCGCATCCCAA
CAAACTATAATATAACCAGCTCTCCCCTGCTTCCCATCCACAACTTACAC
TCCTTCTCATCCCCAATGCTCACTCTCCCGCTCTATAAGTAGGATTTAGG
TTTAGGTTTCATTTTTTAAGAAGTGTAACACACACCAAGATTTGGGCAAA
TGGCGCTGTGCACGAACAATAAACGTGCTTTTTTTTTTTTTTTTTTTTTT
TTTTTGTCTACGTAGTACACACCATGCTTCATGCTCTTCATGGTGTCGGT
TCGTCCCCATATCTTTGACAGGCGGTGTTATACTTTCGCGGCTGTTAGCC
GAGATCGCATTGGTCGATACTTGCGGGATAGTTCCGTCAGGTGTAAACCA
TGATATACTGTATGTATCCTAAATCAGACCCCGCCATAAGACCTGACGAA
CCTGACGGCGTCAGGTGCTTTTCGATTTCGTCAAGTCGAGCGAGCGTTTC
GTCAGGTCGAGGTTTGTCAAGTGACATCGTGTTTAAGTCAAGCATCCCTC
GGCGACCGCCGTCAAGTACATTTTTTGTTTCGTCAAGTTCAGAATTGCGA
TGCGAAAAAAAAATATATAAAAAAAATCATGAAAAATGAAAAAAAAAAAT
GGCATAGGCATAGACTTGGAAAAAAAAAAAAAAAAAAATCAACCAATCAA
ATATTACTTTCCATTTGATTCTTCTTGTCCCATCTCTTCAATCTTTCTTC
TGCTTCTTCGATTCTGTATCTGTATCCCCGCCACCACATCATCAGCACCA
CCACCACCACCACCACCACCACGCACCACCACAACAGCTAGAAATCCACC
AAATTCTTGTTAAAAACTTAGACATTTTGTAGGAATTTCAAATTTATTAG
CCCCTCTGTGCACTTCTTTCTCTTCTTACTAAGGAAGACAAGAAGAAGAA
GAAGAGTATGGGAGGTGTTTCGGTGAAAATAATATACAACCAATGGGTGG
GATTTTCGTATAGAAATTTCATCATCTTCATGGAAATTCTTTTGGAAACT
TGGGATGGTATCTAACCACAGCATCGTCAGCCTGCTGCCCAAGCATCACA
CAGAGTTTTCCTGCTACATATACTTTTTATCGTGAAGAATCCAACACTTG
CAAAGCAACAATGGCCAAGAAATCAGCCAACAAGTCAACCAAAAGAGGCC
AGTCCAGCATCATGAGGAGGGAAGAAAAAAAAAGTGGGAAAAAAAAAAAT
CTCGTCAGGTTGGTTGATATTTCGTCAGGTTGGCTCGTCAGGTAGATTTG
TGTTTCGTCAGGTTGGGCTGAAAAAAATCTCGTCAGGTCGAGAAAAATCT
TATGTCGGGGTCTGTAAATCCTACAACTTCGAAAGCAATCGGCAACAAAA
AAGGCGCCGATGGCCATGCGCTTACGAAAACGAAACAAGGGAACAAGACC
TCGACAGAAGATGTGTTTGTTTGTTTGTTTGTAATTCTGTCCTTAGCATA
CATATTGTGTCGTCTCGAAGACAGGCATCAATTGTCGTCGAAGCTGGATG
ATGAATAATCGGGACTGCCTTTCATTCTGACACTAATACTGTGTCTTAGA
TAAATAATAAGAAAAGAGGACTCAATCATCATCATTATCTAAAAGCACCC
GCGGGTCAATTATGGCACCGTTCCAGAAAGAAAACAATAATCCTTCAACT
TGAACTTTGATCGTCATGAAATGAAAAAGAAGTGATAATACTCCTTTTGT
TTATAATGAAATCATGCGGACGAATCAGTGAATAAAACAAAGGAGCATTA
TCACAGTCTGTTAAAGGTTACGACGTTTCGGGTTTCCCCTTCATCAGGTA
AGATCACAAAGCTATCTCAGAAGAAATCTCATCTCCGAAGAAATGAAAAA
AGGGACTTGTCAGAGCACCAGCACCCACGCCTCCCAACTAGTAAAAAAGA
AGAAAAAGAATGGAATGAAGAAATATACCCAATCAAAGCACCAGAGCAAA
AAATCAGCGAATCAAAAAACCATAAAGCAGCAGAAACCATTTCACCGAAA
AATGGAAAACTCCATGTTGAAAAAACCCCAGGAGGCAAAAAACGGACGTG
GCAGTGGCCACCACGAAATAACATCCTTTCCGCGATCATGGCACCACGAA
AAAACCAACCACCACGCAGTCTCCGTCCCCGGACCAAGAAAACCGTTTAT
GAAAAATGCCGTAGCAGAGGGAGCCAAATAGGGTTCAAATCTCTGCCCTT
CTGGATGTTGCAAGTGTTCTCCACCATTGCAATATACATGGCCTCCTTCT
TCAACCTCTTACCCCAGTGGGTCTCTCTGCACAGCACCTCAGCATTGTCA
AAGTCAAACTCCTTTTGTTTTATTCGCTGATTCGCCCGCATGATGAGTTC
ATTACTATTTATATTATTAATCATTTTCAAACCTTTATTAGCTAATTGGT
GGTCATGTTGTGGGGGGGGGGAAGAACAAAAACTCTAGGAAGCTATCACT
GAGGCAGGCTTCAAAATTCGTCAAATTTTCCGCGCTCCGCGCACTGAGTA
TTTTTTTTGCTCATGCACCGAGTAATTTTGGGGATTTTTTGCGCCCCCCC
AAATTCACCGAGTATTTTTTTTTTTTTGCCGACTTTTTTTTTTCGGCGCT
TCGCGCCTTAAAAATGAAACATGAAGGGGAAGACAGAGAAGATGGGAATG
CGCTGATCGGCGGATACTTGGAAGCAAAATGGCATAGCATACTCCCTCAC
GCGACAGAAGTGCCAGCCTGCTACAAGCTGTAGCACAGCAAAGTCCCACT
GCCCATTTTTCTGCTGCTTTGCAGCCTGGGCCCATGGATGCATACAAATT
TCTGATTCATAATACAGATCAACATTTTCGTAGCGAGGCCCAGGCATCCG
AGCTTTTCCTGCATGCTCCCACACAAAATGTAACATGTCCATGTGTCTGA
CATGCAAATGTCCATACTCTTTCAGCAATCTGTGCTGAGACAAGGCCATG
TAATACCAGTCTCCTTGTCCACTATTGGCCAGAACAGCCCTCAGGCGTTG
TTTCATTAATTGAAAGCAAATGATTTCCATTATTATCATCTTGCTCATTT
TTTTTTGAATTTTTGATTGAGAAGGGTCTTCCCCTTACCAAGTACAGCCG
AAAGATCACCACTATCGTACAGATCTGAGTCAAAGCCAAGAACAGCAATT
TTTGGCATCGGTTGGTAAGAGGCTTCACTATTTGGGTCCGGGTCGAAGCC
AATCTTTGACTTGATACGGGCTTCGAAGGCCTTTCTCAGTTCTAGGAGCC
GTTCACAAACTGTTTAACTTTGAGTGAGCTTGAGCTGCATTTTGGAGGTT
GATAAGATCCGAAAGGAATGGTAGGTCCGAAAGGAATCGACGATAACGCT
GTTGCGCAGTATATACCCGACTGGTATAAAGCTTGCAAAGAAGCAATTTG
TCTGGTAGTAGTACGACGAAGTCTCTCTATTTTTTGGTGACGTGTTAAGG
AAAGGGTCGACTGTCGAACAACGTCGTTGTTCGACGGTTGACCCTTTTAA
TCCTTCAGTCTTCTTCTACTTCTTCTACTACTTCTTCTTACTCTCCAGGA
AAACAATCGAGTTTTTTCTTGACCATCGTCTTAAATTCCCCGAAAATTTA
CCGAGTATTTCGTGTGTTTGTTTTCGGGCGCCCGATTTTACCGAGTATTT
TTATGCCTGTGAGGGTAAAACATTTGGGGGCCCTGTCCACTACAATATTA
TAGAATGTTTCCTTAACAACAGCTGAGGTACATGAGACAACAATGACTGG
TGGTGGCGGTTGGCTCCAGCCGTTGCAGCTTTTCATTTTGTTGTTGTCCA
TTCTTCTTCTTTCATTCATTTCCCATCTTCAAATTGGTTTTCATTTTAGT
CAGAGGCAGCCTGATGAAGGCTGGCGGAGGATGGAGAGAGCCGCCAGCCG
TGGCTTGTAGTAGCCGAAATGCAGCATAGTTGTCATGGACTTAATGATTA
AAAACCTTTGACATATTGCCTTCTTGGCAGTATTTTTTTTTTTTTTTTGT
ATACGTTCTGGAGCTATACTTACTGATGTTGAAAGCGGTTCTCTGTTTAA
ACCCAACACCCTGCAATATATATTCAATTATTGTATCAAGGCCAGGTTAG
ATATAATATAACTATACCCCTAAAAAAAAATCCAGGAAGCGGGGGCGGAG
CCCACCACCGAGGTGCAGG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1:1652534..1658952-

>mRNA_H-akashiwo_Contig1.21.1 ID=mRNA_H-akashiwo_Contig1.21.1|Name=mRNA_H-akashiwo_Contig1.21.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=249bp|location=Sequence derived from alignment at H-akashiwo_Contig1:1652534..1658952- (Heterosigma akashiwo CCMP452)
TTTGAACTAGAGACCCAATCCTTGGAAAAGACCATGAAGCTCTCCCTGTA
CTGCATGCTCATCTTTACAGTGGCCCTCGCCGCCGTGGTCGACGCCTTTC
GGCCCGCGGTCCCACGCGCCGCCACGCAGCGGGACTTTGCCGGTGTGCGG
AGGGCGCCGCGGGCCGTGCTATTGAGGGCGGAGGGTGAGGGCGGCGGCGG
CGGCGGCAAAGCCCCGGAAGCGGGGGCGGAGCCCACCACCGAGGTGCAG
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