mRNA_H-akashiwo_Contig1.200.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-akashiwo_Contig1.200.1
Unique Name	mRNA_H-akashiwo_Contig1.200.1
Type	mRNA
Organism	Heterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)

Homology

The following BLAST results are available for this feature:

BLAST of mRNA_H-akashiwo_Contig1.200.1 vs. uniprot

BLAST of mRNA_H-akashiwo_Contig1.200.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0


Match Name	E-value	Identity	Description

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-akashiwo_Contig1	contig	H-akashiwo_Contig1:8567851..8574519 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Heterosigma akashiwo CCMP452 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	0
Start	0
Model size	166
Hectar predicted targeting category	no signal peptide or anchor
Exons	2
Cds size	162

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681387031.5866454-CDS-H-akashiwo_Contig1:8567850..8567930	1681387031.5866454-CDS-H-akashiwo_Contig1:8567850..8567930	Heterosigma akashiwo CCMP452	CDS	H-akashiwo_Contig1 8567851..8567930 +
1681387031.5961444-CDS-H-akashiwo_Contig1:8574435..8574517	1681387031.5961444-CDS-H-akashiwo_Contig1:8574435..8574517	Heterosigma akashiwo CCMP452	CDS	H-akashiwo_Contig1 8574436..8574517 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-akashiwo_Contig1.200.1	prot_H-akashiwo_Contig1.200.1	Heterosigma akashiwo CCMP452	polypeptide	H-akashiwo_Contig1 8567851..8574517 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-akashiwo_Contig1:8567851..8574519+
coding sequence from alignment at H-akashiwo_Contig1:8567851..8574519+

protein sequence of mRNA_H-akashiwo_Contig1.200.1

>prot_H-akashiwo_Contig1.200.1 ID=prot_H-akashiwo_Contig1.200.1|Name=mRNA_H-akashiwo_Contig1.200.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=54bp
GDDDGGLGLDIGRIEAENAALAEESYRISESGTMLIDGFEIRQSGLAINS
KKGI

mRNA from alignment at H-akashiwo_Contig1:8567851..8574519+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-akashiwo_Contig1.200.1 ID=mRNA_H-akashiwo_Contig1.200.1|Name=mRNA_H-akashiwo_Contig1.200.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=6669bp|location=Sequence derived from alignment at H-akashiwo_Contig1:8567851..8574519+ (Heterosigma akashiwo CCMP452)
GGCGACGACGACGGGGGCCTGGGGCTGGACATCGGGCGCATCGAGGCGGA
GAACGCCGCCCTGGCCGAGGAGAGCTACCGGTGAGCGAGCACGCGATTGG
TTAATAAATATATAATTACACCTGGCAGGCGCTGTGGGTGCTGGGCAACC
TGGCGGGCGAGGGCGCGCCATAAAAAATAATAGCTCCTGTTCGGGAGAGA
CGTGTTGTGCTCCCGGATCCACGCGGGTTCGCCGACCGGGGCCGGAGCAG
GCGCTGTGGGTGCTGGGCAACCTGGCGGGCGAGGGCGCGCCATAAAAAAT
AATAGCTCCTGTTCGGGAGAGACGTGTTGTGCTCCCGGATCCACGCGGGT
TCGCCGACCGGGGCCTGCCCTGTGTACGCTTCCCCTTCCACTCGGAGATT
GGAGGGAGCTTGCTCGTCCTCTCGAGTTGGAGGAAGAAGAGAAAAAGGGG
TTTGCACGAGAAGCAGGGGGAAAACTTGCGGGGCTTTGATCGTCGTCTTC
GTTGGGGTTTTGCAGGATGCTGGCCGTTCTTTTCAACGCCCCGAAAACCC
CGGAATTTTTCGGGCGCTCTGCTCAAAATTGTGGGATGTCGACAGGTCCC
TGCGGTGAGCCGCCGCCGCCGCCGCAAGTCGCTCACCCCCCTGCTGCGCT
GGGTGGTGGGTCCTCAGTGTGCCGTGGTTGAGGCCGCCGCCGCGGCCGAG
CGGCGCTTCCGTCGCTGGAGGTCGGCAGAGTCCTCTTCTTGCGGCTGCGG
CCTCGTCCGCGCACTGCGGTTGCGTCCGAGTCCTCTTTGCGGGCCGCGGT
GCAACGAGGGGCATGCCCTCCCTTGGTGGGTCGGCGGCCGCCCCCCCCCC
CCTCCCCCCTGCTTCTTCTGCGCATCCCGCGCCGGCGaaGTCGTGTCGTC
GGCGCCGATGAGCCCGTGGCGTTCGACTGTGTCGCCTGGGTTTGCACCAA
GATGCAAGAAGGGGCAAAGGGGTAGCTCTAAAGGATCTCTTCTTTTGACT
TTATATTTTAATATTTTTTTTTTATAAACCTTCAACATTTTATTGTTTCT
CGCTCTGTCCATCCAGAGCGACCGCATTGAACACCACCACCACCAGCAGC
AGCAGCAGCAGTTTTTTGTTTGTTTGTTTGTTGTTTTTTCTTCTCCTCGG
TTTTTTTCTTCGATCAATAACGACTTAGTAGCAGTTTTAAAATTTCCCAA
CAAGCATGCATGCAGCAAATTATATTATTATTATTATTAATCATCGTTGT
AGTCTTAAAACTTTCCTAGCCATGCAGCAGCATTTTAAAATTTCCTCACA
AGCATGCATGCAGCAAATTATATTATTATCATTATTAATCGTTGTAGTAG
ACTTTCCTAGGCATGCAGCAGCATGCAGTAAATTATATTAAATATATTGC
AGGGTGTTGGGTCTAAACAGAGAGCCGCTTAGAACATCAGTGGTGAGTAT
AGCTCCATACTGCCAATATGAATATATTAATATAATAAAAGTGCGGCTTA
TGAGGCAGCGAAAACATTTGTTTATTTTTTGCAGCTCATGAAGCACCGAG
GTATCAATGCCAACACCCGACTCTGATGCCAGAAGTGCAACCCAGGGTTC
AGCACTCTTGGCTGGGTGGTTCTGGGCGAGGATAGCACAAAGGAATCAGG
GCAAGTATGACACATAACTCCTCATCACTTTTTGAGTTTAATTGTCGTTT
GCTGTATGTGTTTGTAATGTAAGTTTGTTTTGTTTTTGTTTGCTGTATGT
GAGTTTTGAAAAAACTTTTTGGTCGTATGTGTTTTGAAAAAACACAGTGA
CTACAGTCACAGACAGAAAAAAGAATGCCCTGTGCAGCACCAACCGTGTA
CTTGATCAGCAACAACCAAGGCTTTCACACTGCAATTATTAACCACTGGC
AATAAGCCTTCCACGCATGTGTCTTCCATCTTCAACCTGGACAGCAGCAA
CTGTCGCGTGCTTGCAAAGGGAGCGCCGTGTGCTTGGAAACAGAATACCG
TGCTTCCAATAACCTTTGCAGCAGCAACCGTGGGCTTGGAAAATGATACA
TCAGCAACAAAGCTTCCACGGCTCAACACAGCGATGCAACTGTTTACACA
GTCTCGGCGGGGCAAGAGTATCACCAGAGCAAAATGATAGATCAGTACAT
AGGAACAGCGCCAGTTCCAGCCTTGCACATCCAACGCTAGAGCAACATTT
GGCTTGCGCATATCAACATAGAAAGTAATGGTAATGATGAGCGCCACTGA
AAGAATGACCATCCAACCACGAAGACATCTCTACTCCCTCACCACCTTTG
TAGAAAAAGTGACGAGACTGATTCTGATTGCTGATTGTTGTGGTGTAGTA
GTGTGGTGGTGAATAGCAGCAGCAGCAGTAGCACCCACACCACCACCAGC
AAAAAGCAGCAGAGCAGTGGTAGCACCACCACCAACTGTCAACAGTATAG
TGCAGCCACAAAACTCTCATTAAAAGCTATGTTTACCAAATAACAACGAT
TTTGGGGGAAAATCACGGCTGTTGATATTGTATCTTTGTTTGTTTTTTTT
TGGGGGGGAAGAAAAAAAAGTAGAGCATAAATCGTACAGAATTTCTTGAA
AAGTAACGCTTCAAACAATCCGGTTTTCACTCTCTGAAAATGAAAAAATC
ATAGCTTTGTCATAAAACTTTGTTAAACTTTAAAATTAACTAGAGTTTAC
TCATGTTCTTACCACAAATTTAGAATTTCCTGTTTTGGAGCGTGAAAACG
AGAATTTTTGAAATAATGCTTTTCCTGTAAATTTCCCAGAGAATATTGTT
GATTTCCTGCCAATTTCCCTCCGGTGTCTAAGAATTTTATGCTTTAGTAA
ACTTTTCCTAATATTTTTTACTTCAACCGTAAAAGAGAAGAAGAAGATGT
GAATAAGGAAAAATATTTCCAAAAATCATGTTTTCTACATAAACCATATA
CGTTTTTAAAACTGGAATTTGAGCTAACCCTACACTAAACCCATCACGAA
ATATGCAAGCTATGCAAAACTATTCTTCCGAAAAGAATCATTCTGGCTTA
TGCAAATGCAAATAGATGTGAAAAGTTTTTTAAGTTCTCATTAAAAGTTT
GGCCATTTTTACGGATATTTTGAGTTTTTTAGTCCCTGCATACACCTCTT
CTTCTCCTTTTTCAAGAAGAGGGAGAAGAAACGAAGAAAAAAAGGTATAA
AGGGGAATCCTTACAGAAATTGGCGGGATTTTGGCGGGAATTTGACCATT
TTCATGGGAATTTCAGCATGAATTTGGCCTTTTCCAAATTTCCGAAATTT
CAAGTATTTTTCGAGAATTCAACAAAAATTCGTGAATCATTTGGCGTGGT
TGAAGTTATTGATGATGACACGATGACGATCGAAAGAAAATTGTTCTGTA
TTTTGATTAAAGGTATCCAAACTTCTTAAAGAAATTGTGGAATTTCTCAA
AAATTACGGGAATTTCGGTAATTTGGGAAAGACCAATCTGCTTTTCACAT
ACCCGTTAAAATAATGAAATTTACGCCAAAATCCTGCTAATTTTCCTGTT
TTTTCTATCATAAACTAAAGAGAGAATTGTATAGAAAGGGTAAAAAATCA
AAATTTCCGTATTAATGGCAAACACTTTGAATAAGAGTTTCCGATACTTT
TATTTTGGATCCAGACGAATGTTTGCAATAGAAAGAGAAGACCGGGAAAT
TTGGCGTGGTTGAAGTTGTTGATGGTGACATGTAAAAGAAAAAAACTATT
CTGTAGACGGAAAATCAACACTTTTCTGTTATTGAAGTTCAAGTTATAAA
TTCTTCTCTATTCTATGATGCTGCTGCTCGAGTAAAACGACACTCTGTCA
TTACTCCGAATATATTTCACGATCTACGTGAGAGATAGCAAATGAAAACT
GTACTATCCATATCATATAAACATTTTTATAACAACAGCAGGAGCGGCTG
CTTCTAAGGCTTTGCAAAGCTTTTTAAACATTTTGATAACAACAGCAGGA
GCGGCTGCTTCTAAGGCAAAGCTTTTTTTTTAAAAAAGTGCTGTTTTGGG
AGGAAACAGGATTTTTGGGGGGGAAATTCTATCAGTGCACATTTTATTTT
TCCTATTTGGGTTCAAGAATAAATTCAAAGTTTTGGCGGAAACTTCCCTG
AAAAAAGCATCATTTCATAAGTTTCCGTTTCCCACACAACAACAGGAAAT
AAAAACATTTAATGAGGAATTTGTAAAGTTTTAGCTAGTGCTCCTGCTGC
TGCTGCTCCCCCCTCTTCTCCTCGCATTTTTTTTTTTGCAAATCATCACC
ACTGCTTTTCCTTTTCGTCGAGGAGAAATGAAAAATTTGAGTATGTTTAC
AAATGCTTCTACAGTAGTTGGATTTACGGGGGGTACTCTTCATATGTCGG
ATTTCATTTAACACCCTCAGACTTGAGGGCTTGTACAAGAAAATTTCCTA
TTTTTTCTGTCCCTACATCATCTACAAGAAGAACAACACCAAAGAGCCCT
TCCCCTAAGTGCTCTCGCAAATGTTCGAAATGTCGATCATTATCGCACGC
TCCTTGCTACATGATCTTTCTTGGGGGGGGGGTCCACACCTATTAACGCC
AGTAGTACAATGGCAACAGCAAAATACCTCCTCTATAGGCTTCTAATTTT
TTTCTTCTGTTGCTTTTTTCTTCATCGCACGCTCCTTCCGTGATCATTTT
TTTTAGTTCCACTCCTACCCACATTAGTACAATGACAACAGCAAAATACC
ACCTGCTCAGGTTTCTACTTTTTCTTGCTCCATTCTGTTTCGCGACAAAA
ACTGCAAAAATCATAATACATATTCCTACTCCTACTGCCATGATTCATTA
CTATGATTTGGTCCAAAAACTACTGTTGTATAGTAGATAGATGTGTAAAT
AGTGCAGCTGCATCATCAACTGCCAACGCCAAAAAATATTTCATGATTTG
ATTGTCATCATATGCTACTACAACATCATCACCAACCAGTTTCAACAACA
CATCAAACTACGCTCCTGTTAATTAGCACATCAAGCTGCTATATGCTCCA
GTGTTGTTGTTCCTCCACCACTATATATCAAAAACAAGAAGTAGCAGTTC
TGCTGATCAGCACCTACTTGGGCCCGAAGGGCCCCGCATGCCCTGGTAAT
GCTACAATAAGTTCTTAGTCCGACACAGGATTGAGCGACTATTTGAAATC
GAACAGTTGTGCAACCCACATAGGACATTTACACAGATCCAAGGGCAACT
CACCGGACAATGGTCGGACAAAGGCTGATCGGACCACAGGGCGTACCACC
AAATCGGACAGTTAAAAAAAGTAAATAGAGACAATACAACAAGGTTACAA
CTGCGGAACGGTCGCTCAATTCTGTGTCGGACTAAGTATATATATGTATT
ATTAGAATATATGTTTTCGGCTACTGATGGATTATCGTCTAATATGTGAT
TACTTTCCATTGAGTATGAGCATAAATATAATCCAACGAAATGTTTATTA
CTGAATATTTCGGGTCGTTTGGTGACCCTTTATCAACAAGGTGCCAAGCC
TTAGGATTCCTGGACACCCCTCAATGGTAATGAGTAGGTACTATCACTAT
ACAACTTCTTCTTCTTCTTCTTTGCGACAACATATATATCGATCATCATC
GCCAATGACTGGAGCAACAAATGTGTAACGGCCACTACGTCATCTGTTCT
TCTGGCTGCTGCTGCTGCTATACCAGTCTTGGCCCGCATGCTGCTGCTGC
TGCTACATCAGTCTTGGCCCGCATGCGCTAAAGCAAAAAAAATAAATCCA
CATGCTGCTGCTGCTGCTACATCAGTCTTGGcCCGCATGCGCTAAAGCAA
AAATAAAAAAAATAAGTCTTGGGCAAAATGACGAAATGCAATATCTGTCC
CCAGACTACTGCATCGTACGGCTTTCTCCTCTTTTCCGCCAAGCCTCACG
GGGTTACAGAAAAATTTTGTAGTCCTTGCGGATGAACTTGAAAGTTCTTC
CCCACGTAGTGTCCAGCCTGTAATTGTTGTCCACATTCATGGTTCCAGGC
ATTCTATCATCTCCTCCCGTCCTTGCCTGGATTAGGATTGACTCCATCAT
CCTTCTTCTGTATGTGTTGCCCTCTTTGGCTACTATATGCGACTTCTCCA
TTGGCGATGATGATCGATATATATGTTGTTGCAAAGAAGAAGAAGAAGTT
GTATAATGATAGTACCTACTCATTACCATTGAGGGGTGTCCAGGAATCCT
AAGGCTTGGCACCTTGTTGATAAAGGGTCACCAAACGACCCGAAATATTC
AGTAATAAACATTTCGTTGGATTATATTTATGCTCATACTCAATGGAAAG
TAATCACATATATATATGTATATTCTCCACATGGTTTGTGCACATTGTGG
TGGAAGTGGATGGTGATATATAGTACAATCCATCTGTGCTATCTTTTTTT
GTGGTATGAAAAACGCTGGAGAAAAAAGAAAATAGTAATATATATATTTT
AGAAGAATATGAATATGTTTAAGACTTCCTTTTTTTTAATAATAGATTAT
AAATGTCTTGTTTGTGTGTATGTGTTTTCGAACAGTATTTCAGAGAGTGG
GACAATGCTGATTGATGGCTTTGAGATCCGGCAGTCTGGCTTGGCCATAA
ACTCCAAGAAAGGCATAGG

Coding sequence (CDS) from alignment at H-akashiwo_Contig1:8567851..8574519+

>mRNA_H-akashiwo_Contig1.200.1 ID=mRNA_H-akashiwo_Contig1.200.1|Name=mRNA_H-akashiwo_Contig1.200.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=162bp|location=Sequence derived from alignment at H-akashiwo_Contig1:8567851..8574519+ (Heterosigma akashiwo CCMP452)
GGCGACGACGACGGGGGCCTGGGGCTGGACATCGGGCGCATCGAGGCGGA
GAACGCCGCCCTGGCCGAGGAGAGCTACCGTATTTCAGAGAGTGGGACAA
TGCTGATTGATGGCTTTGAGATCCGGCAGTCTGGCTTGGCCATAAACTCC
AAGAAAGGCATA