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Homology
BLAST of mRNA_H-akashiwo_Contig1.190.1 vs. uniprot
Match: A0A7S4DFF5_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DFF5_HETAK) HSP 1 Score: 182 bits (463), Expect = 1.040e-57 Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 1
Query: 1 LEQQLVQTQRAKKVEVGKLKRDLKDKEQQLKTQEHIMRENARLEGKVRNLTLESQSNAALLRQRNSELYSLKSRYGELETNLRVTRDEASGERRRHAKTAQRLRE 315
LEQQLVQTQRAKKVEVGKLKRDLKDKEQQLKTQEHIMRENARLEGKVRNLTLESQSNAALLRQRNSELYSLKSRYGELETNLRVTRDEASGERRRHAKTAQRLRE
Sbjct: 20 LEQQLVQTQRAKKVEVGKLKRDLKDKEQQLKTQEHIMRENARLEGKVRNLTLESQSNAALLRQRNSELYSLKSRYGELETNLRVTRDEASGERRRHAKTAQRLRE 124
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 0 |
| Start | 0 |
| Model size | 318 |
| Hectar predicted targeting category | other localisation |
| Exons | 6 |
| Cds size | 315 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1681387031.4689212-CDS-H-akashiwo_Contig1:8125975..8126026 | 1681387031.4689212-CDS-H-akashiwo_Contig1:8125975..8126026 | Heterosigma akashiwo CCMP452 | CDS | H-akashiwo_Contig1 8125976..8126026 - |
| 1681387031.4793544-CDS-H-akashiwo_Contig1:8127734..8127785 | 1681387031.4793544-CDS-H-akashiwo_Contig1:8127734..8127785 | Heterosigma akashiwo CCMP452 | CDS | H-akashiwo_Contig1 8127735..8127785 - |
| 1681387031.4892418-CDS-H-akashiwo_Contig1:8128016..8128091 | 1681387031.4892418-CDS-H-akashiwo_Contig1:8128016..8128091 | Heterosigma akashiwo CCMP452 | CDS | H-akashiwo_Contig1 8128017..8128091 - |
| 1681387031.5004554-CDS-H-akashiwo_Contig1:8128197..8128236 | 1681387031.5004554-CDS-H-akashiwo_Contig1:8128197..8128236 | Heterosigma akashiwo CCMP452 | CDS | H-akashiwo_Contig1 8128198..8128236 - |
| 1681387031.5089636-CDS-H-akashiwo_Contig1:8128638..8128710 | 1681387031.5089636-CDS-H-akashiwo_Contig1:8128638..8128710 | Heterosigma akashiwo CCMP452 | CDS | H-akashiwo_Contig1 8128639..8128710 - |
| 1681387031.5184119-CDS-H-akashiwo_Contig1:8133653..8133680 | 1681387031.5184119-CDS-H-akashiwo_Contig1:8133653..8133680 | Heterosigma akashiwo CCMP452 | CDS | H-akashiwo_Contig1 8133654..8133680 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-akashiwo_Contig1.190.1 >prot_H-akashiwo_Contig1.190.1 ID=prot_H-akashiwo_Contig1.190.1|Name=mRNA_H-akashiwo_Contig1.190.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=105bp
LEQQLVQTQRAKKVEVGKLKRDLKDKEQQLKTQEHIMRENARLEGKVRNL
TLESQSNAALLRQRNSELYSLKSRYGELETNLRVTRDEASGERRRHAKTA
QRLRE back to topmRNA from alignment at H-akashiwo_Contig1:8125975..8133680- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-akashiwo_Contig1.190.1 ID=mRNA_H-akashiwo_Contig1.190.1|Name=mRNA_H-akashiwo_Contig1.190.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=7706bp|location=Sequence derived from alignment at H-akashiwo_Contig1:8125975..8133680- (Heterosigma akashiwo CCMP452)
CTGGAGCAGCAGCTGGTCCAGACCCAGGTCCGGGGTGGGGGGGGGTGGGG
GGGTCTGGTGAGGTCGGCGACGCCGTGCGGTGGAAGGGGAGGTGTTGTTC
GTCTGTGTGTGTCCTTGGAAAGACGGTAGCCTGCTGGTGAGGCACCAGCC
ACCGTGTAGTGGAAGTTAGTGGGGGTGGGGGTGGGTGGGGTGGGGCGGGC
GGTGGCAATTCATATATCCCCCTCCCCCTTTTTCTATATATATAAGTGGC
ATGCCTGTCGTAACTGTCGCTACCTCTATCCATTATTGTCCATGGGTGGT
GTATAGTTGTCTTCTAAGGGGAAGTCATCCTTGTTTGGAGAGCAGGGTGC
TTTAGAGCGTTCCATATGCCCGGGATTTTTGCCCTGTAGCATCTTTTGAA
CGTTATTTTGAAGCACTAACAAATATAGTCAAGGATACACTTTTGGGATA
TTGGTGTTATTAGACCTGTTATTACAGACTTGGAGTTGTGCGAAGGGGGG
CCCTTTTTTTTGGGGCTAGACCATTAAATAGGAGGCCACACAAACCGCTG
CTGTTACTGGAATAATGGAGCTCAGTAGACAGCGGCGGGGCCATGAATAT
TCAACAACACGACGATGAGTGAAGTAGTTGACCAAAGCCATTTCCCCCAC
TTCATCCTCCCTTGTATTTTCTATATTTCACGCTGTACCGGCAAACACAA
CCAAAGTATTGCAACAGAAGGTCAACTCCTACTGGGAACTGCAATTATAC
AGACTTGGCCCGGTTATGCCCCGGGGGGTACTATCAATACTGCTAGGCAC
TGAAGTACAAAGGTATTATTCGATAATTCGCTGCTAATGTGAACGAGCGG
GGCGTCATTCCAGAAGACAGAGATATACAAAAACATATGTAAGTAAAAGT
ACAGTACTCAACGCCAGAGTAGTAACCTCTCACAACTTCTTCTTCCACCA
TGTTTCTTCTCTTGACTTAGTCTTAGTGAGGAGGAGGATAGTGATCTGCA
TTTCGATCCTCGTACCTCGGTGTGTTGATGAGTATTCAACAACCTCCCTC
CCTGACCAGTCAGAGCCAGAGAAGGCAAAGTCTGGTCCAACCAAAAGCAT
CAACACTAGAGGTAGGTACTGGACTGCTCACCAGCTTACCATGCTCCGCC
TGTACACCAAAAGTCTTCTACATTCAGTGCAGTGCAAAGATGTCAGCTGC
TGCCAAGTGTTTCTAGGTGTGGGTTCGGTTGAAGTGACCCACCAGCCAAA
AGTCATGCCTTCTTGATTTACCACCAGCCTGCCATACCACTCAGCCTGTT
ATGCACACCAAGCTTCAGATTCAGATCCAAATAGACCGATGGCACAGTCT
CAAAACTGTCAGCCACCTTGAGCTTTGGTCTGTCTACACCAGCTCTGCTG
ATCCTTTTCTGAACGCTAGCTGTCTGGGCGACACTACACCAGCTCTGCTG
ATCCTTTTCTGAACGCTAGCTGTCTGGGCGACACTTGGTCTCACCCCCCC
TCGCATGTGGCAGCCCGGCGAACTTCCGGAGACTCTTTGCAGGCTGCGCC
CCGCCGTCTCCAGCTTCTGTTCCAGCTTCTGATGCCGGCAGAGGTCTGCG
CCGCCCCAGAGCACTAGCATCCGCCATTGCCGGCGTCTGCGCCACCAGCG
GGCTCCTCCCAGGCAGTCGCAGGTGCCCAGGGTGGGGTCCTGTCGCCCGG
CCCCGAGGTAGGCCTAGTTGTCTGCGCCACAGCCGGGCACTTGCCACCTG
GCTCCTTGTTGCCTCCATGGCGCCCGCCGCCGCCGCCGCCGCCGCTCATG
CCGCTGCGCGTGTTGTCGCAGCGGGCATCACACATCACCCCCCCATTGGG
CAAGACTTCGGTGGGCCGCGTTGACGCGGGCGTGGGCGCGGTCCAATCGC
TCTATTTAGACACGGTTTTGCTGTGTTAACTCCAAGGTTGGTGACAGAGC
GAGGCCCTCGCCCTCCGCCTGCGCGTCGTGGCCGCCCAGCTTGGCTCCGC
CGCCATGCGAGCCGGTGGTCGACTGGGGCTGTCCATCCTCCGTGGTCTGG
ACCTTGGAGGTTCCACACAGCGCGGGGCCCGAGACCGGCGCCTGTGAAAG
GGGGTCACGCAGTCCAGCTCCGCCATCGCACTGGCTGGGTGCTGGCTCGC
GCCCTCCCGGGCTTGCGCCCAGGAAGTACCGCGCTGGCCGGGGTACGTGC
CCTCTGCCTGCGCAACAGGGTTGCCCAGCTCGGCCCCACCGCCCCTCGGG
CCGGCAGCCAGCTGACGCCCACCATCCTCCAAGGCTAGCGCCCTAGAGGC
TCCACGCAGTGCGGGGGCTGCGCCCACCGCTATTGCAGCAGGAGGTCAAC
TCCTACTATAGGAACTGCTATTATACAGACTTGGCCGGGTTATGCCCGGG
GGGGTACTATCAACACTGTTAGTGTGAAGAAGCGGGTCATCATTCTAGGA
GACAGCGATACATGCGAAAACATATATATATATATATATATATATATATA
AAAGTAAAGTACCTTACGCGAGTATAGTTACCTCTCACAACTTCTTCTTC
CACCATTTTTCTTCTCTTGTCTTAGTGAGGAGGAGGAGGATAGCGATCTG
CATTTCGATCCTCGTACCTCGGTGCGTTGACGATCATTCACCCGGGCTCG
GCTGCCTGTACTATACCGCGGCTCTCCGTGATCGCGGCACCACCCGCGCT
CACGACTACCTCGGCGATTGTGCGCTCAACACTCCCCCAGACCGGATGGA
AACCCGCGCAGCAAGCACACCAAGGTTCGAGGCGCGTGGCTGCTCCGCCC
ACACGTGGTGGTGGCCACCCCCACCAGCAGCGGAGGCCGTGGCCCGTGTG
GCCCCGTAGGACCGGGTAGGAGGAAGCTGCAGCTCGGTAGCCCGGGCGTT
CGCGTCCGGCGCACCAGCTGTGTGCCCCAGGCAGGCGGCCACGGCGGCGG
CGGCGGCAGTGGCGGCTGCGTCAGCGGCGACGCTCCCCTGGCCAGGGCTC
CACAATGTTGGCGTCCGAGCTCATATATAAACTCGCATCCCGTACAACAG
TTGCTAAGCCATCCAATGGCTAGTTGCCTTCCCCTCCCCTCTGACAGCAC
CAATCCTTTGAGGATGGGTGCCGGACCGACAGCTCCAAGCCGTGGCTGGG
CGCTAATCGTCGTCAAGTTAGACCACATGTGCACAGACAGAATCAGTGGG
CCCACCCCATTCCTGTTCCCCTGTGGGTACTTAGCATTAGTAGTTCTCAT
AATCCTGTGGGCATGGCTTCCAGATGTTCTCATTGAGCTGAAGCTCTCGT
TTCCCGCAATTTCCACGGTCAATACAAAGTGGGCCCGAAATTGGTGGTGA
GACGGCAACCTGTATTACCTCCATACAGCTGTTTGTGAATTGCCTTCATT
GAAAAGGGCGCTTCAGTAAAGGGCTATCATAAGATACCCCAGCATCCTTG
GACAGTGAGTCCCTAGAAGTCAAGATGGCTGCTGCTGCAAAGCCATTGCC
TGCGCCAGCTGCTGTGCTGTAAGGCTGCTAAAAGCACCTGCGCCATCAGT
GCCACTACATGACTTGGTCAAAAACTGCACCACCCTCGCAGTGACCTTAA
TTCCAGCAACAGTATTAGACCTGTTATTATTACAGACTTGGAGTTGTGCG
TGGGGAATCCCTTTTATTTTAGCTCATTAGACCATTAATTATAGGAGGCC
ACACAAACCGTTGCTGTTACTGGGATTGAGCTCTCAGTAGACAGCGGGAC
CATGACTATTCATCACGCCAGTGAGTGAAGTAGTTGACCAAAGCCATTTT
CCCCGCTTCGTCCCTTATCTTTCCACTTCATGCTGTACTGGTAAACACAA
CCAAAGTGTTGTAGCTCGTAGGTGCATGTAGCTACCACAACAAAGTTGCT
GTGCGGCACCCCCCGGGCTCGGCGGCCCGTACTATTACCAAGGCTCTCCG
TGATCGCGGCGCCCGCGCTCCTCACTACTATCTCGGTGATTGTGCGAGTC
CTTATTTCCCGTGCCAAAACAAAAGAAGGACTGTCCTCCCTTTCATTTTC
TGCAAAAGAGACTATTTCTAATGGAGGGAAAAAAAGGAAGAGTTTTTGAT
GATGTATTTATGCGTACATTTTGAAACATATTTAATATATATTATTACGT
TTTATGTGATTGAAATGAAATTGAAATGAAAGTGATCACTGATGGTACGG
AACAATTAATTAATCTTCTAGCGAATGATACGCCTCTCCAGCTCCCGACG
TTTCGACATGAAGTCATGCCTTCTTCACAGAGTCACCAAGTTGGCCAAAC
TCCAACTAGGTCCCATCACGGTAATGAAGGTGGTTCAGCAGCACAACAAC
TCCAATAGCCGAAAAGACAAATATGTGAATATCATTTATTACATATAATG
CATTGTTGTCTTCTGTCTGTTCATAAATTAAACTACCTCAATAAATGTTT
TAAAAAGTATCTTTTTGAGTGTCCCCTTCTTTTTTTCTTTATATTTGGGT
GTGGTGTGCATTTTGAACAACAACGTTTTATACTCTGTAAACATAGTTAT
ATAAATATATTATACATATGATGATGGTGATGATGTTAATTTAGTTTACA
GGGTCTAGGCTATCTCCTCTCACTAGAGGAGGCGTGAACCCCCCCCTGCA
GGAACGACCAGACGCACACTATCCTATATTGTGTATATAATTTAACATAA
GAAGCTGGAGAGAGTAAGGATTCCTGAAGTTTGAAACAACCTCGACCACT
AAGAGCTTCATCAACAACAACACATGAAAAGATCACTCCACTTAGAAAAT
AACTCCGAACACATATATGACGACAAGTATAAAAAAAAAAAAAGTATAGT
AGTTTAGTGGGATTTATTTTCATGATGACCTAAACACGTATTAGACAAAA
GCCTCAACCCAACCATAACTAGTATATATTTTTACTTTGCTTGGTGCATC
AATGCATCATATTACAACAGCGAGCAAAGAAGGTTGAAGTTGGGAAGCTC
AAAAGAGATCTCAAGGACAAAGAACAACAGCTTAAAACCCAGGCAAGGAT
GTTGCATCTTTGTTTCCAGAAAATGGGAGATATTAAAGTCCATCATTTTC
ATTCTTCTACACCATCATCCCCCTGCTAAATTTATGGCTGCCATACTCAG
CCACAGAGAGACCATAGTTCTGGTTGAACTGTTATTGTACTTGAGAAACA
CATCTTGATCTATCATTGCATCATCCATCACTGTATGGCATGACTAAAAA
GAATTTGCAATGCAGTGTTCAGTATACGATAATTGGTGTAGCTGCACCAT
ACTTTTTTATTTGATGGAGTAGGATATACTCAATTGCTCATATCCGTTTC
CATCTTCTGCCACTACCAAGGGTGAGCCACCACTCCTACTTGTGTCGAGA
CTGAAAAATAAAATAAAAGTAGCCCCTCCCCCCCCCCCATTCAGGAACAC
ATCATGAGAGAGAATGCAAGACTGGAAGGAAAGGTAAACCGATCAGTAAT
TCCTGTTTTACTGTTCCTCTTCTTCTTTTTGATACCTAACCTCTTATTAA
ACTTGGTGCTTTATTTCGAAAACATCACCACTTTTGCAGGTCCGCAACCT
CACCCTCGAATCACAATCTAATGCAGCTTTGCTCAGGCAAAGAAACTCTG
AGTTGTATAGCTTGGTGGGTAAAACATGTTCAATTGTGTGTGCACATGAG
GAAATTGTGTGCATTAGTACTTTGTAACTTCAGAAAAAATAATTGTGGTC
TTGATTGCACCAACCCCGCTCCCCCCGTAACATAAAGGTACACGCTTTTT
GGCTGATAGTTTCATAAACCCTAGAACAAACAAGTAAACCCCTAAAACTC
ACACAATCTCTGTGTTATCACTTGCGCCACACTTTTATGGTATAGAAATC
GCGGTATGGGGAGTTGGAGACCAATCTCAGAGTGACACGGGATGAGGTAT
CTGGGTTTGTTTGTGGATTTTTTGGTGGCAAAACTGTACAAGTGGCATAT
ATATTACATTATTTGTGGTGCCCCAGCATCATCATCATTCTTCTTCTTCT
TTCTTCTTCTCCTTCATCATCATCATTCTTCTTCTTCTTCACCTCGTGTT
CATCATTTGTGTTGTTCATTAATCATTACCACACATCATGGCTTCTTTAG
TAAGCCCCATCTTAGACATCTTCATAGTAGTTCACTACTTGCTTGTCAAG
ACATGGTTCTCCCTGGTCCTCAAGGCCAGGAGGGTAACTCAGCTAATGCT
GACTTACCTCTCTGTTGGTTATGGGCAATTCGCGCATGCTCTTCTGTCCC
TTTGGTTCATTCTGCTAGCCATTCCATCGTGGATTTTGTCGGCGCTACTA
CCCCCTTTTCTGGGTGGAGGCGCCATTGCGTTATCGCGGCAACCACGCCT
GTTCTGCTAGGATCCTCTTCTCCTATGGCCGCCATTGATTCTTCAGCGTG
CTACTTGGACACGGGTTGCACGTCGATTATGACTAACAACTCGGCCCTCC
TTTTTGGAGCGGTGCAGTCTCAAGTCCCGATCACCACTGGAAACTCTGGC
GCCATGACATCTGCCTCATTCCAAGGGATAGCGCGTTTTAGGTCACCTAT
CACGCGTCGTCCTTTTGCCTTCGATCAATCTCTGTATTGTGAGCAGCTCC
CGTGCACTCTAGTGCCGTTGACTGTCATGCGCAGGGTTGGTTTGAAGTCG
GTCCTGGATGAGGATTCCTTGGTCTTTCGGTTCTACTACCGTCATGAGCT
ACAGTTCTCGGCAGCTGTCGATGAAACTGGTCTTTATCGTTTGGACTGGG
ACCTCTCTCCTAATCCGAATCCTGTTCAGCCCTCTAGTTCTCCCTCCGAT
CCCTCGTCTGACTCCTTTGATCCCTCATCCTTCTCCGCTGGTGATGCTCC
CAGCTATTCTGAATCTGCCCTAGTGGCTGATGCCCGTATAGACAATACAA
TGTCTCTCTGGCATCATCGCCTTTCCCATGCGTCTGAACGTCTAATCCGT
CAAATGGCCGCTGATGGTGTCATTCCCGGCCATCTCATCAATTTGAACGA
CAAACTTCCCTTTTGTCATTCGTGCTGTGAAATGAACATGACAAAAAGAG
GTCCGGTTCCGAACGGTGCTCCTCGTACTGATTCAGACTCTCCAGTTGTC
TCCCGTATTTTGCAGGAAGTCTCTGGGCATCATACTACCATTACCTTTTT
TGTATCTACGTTTATTCATGATACAACAACAATGTTAGATTCAGCCAAAG
CTGGGTTAAAAGTTAAACCTCAAAACCATCAGTGTCATACTGATCAGCCT
AGGCTCAAGGCACCAGGGCAAGGTGAAACTCAAACGAGGTAGCTAAAGAG
TTTTACTTTGTGGGAGAAGTGGTTATTCGGAGAAAGTGAACACAAACAAA
TCAGGAGCACGACAAAGAAAAATATGAAAATATGATGTCTCCTCCATTGC
CAGGACAAACGGAGGAAGTAGTATGATAATAAATATGAAAAATGTATATT
ATTTAATCATCATAAAAGTATCAATTTTGTTGCATGGACCTTACTACTAT
AGATGCTAAATAAATATAGTTTTTTAATCATCGTCATCATAATCATCACC
ATCATCTGATGTCCATATATGGTAACCCCCTCTTCTTCCTTCAAATAATG
CCAGGCGTCCGGTGAGCGTCGACGGCACGCAAAGACCGCCCAGCGGCTCC
GCGAGG back to topCoding sequence (CDS) from alignment at H-akashiwo_Contig1:8125975..8133680- >mRNA_H-akashiwo_Contig1.190.1 ID=mRNA_H-akashiwo_Contig1.190.1|Name=mRNA_H-akashiwo_Contig1.190.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=315bp|location=Sequence derived from alignment at H-akashiwo_Contig1:8125975..8133680- (Heterosigma akashiwo CCMP452)
CTGGAGCAGCAGCTGGTCCAGACCCAGCGAGCAAAGAAGGTTGAAGTTGG
GAAGCTCAAAAGAGATCTCAAGGACAAAGAACAACAGCTTAAAACCCAGG
AACACATCATGAGAGAGAATGCAAGACTGGAAGGAAAGGTCCGCAACCTC
ACCCTCGAATCACAATCTAATGCAGCTTTGCTCAGGCAAAGAAACTCTGA
GTTGTATAGCTTGAAATCGCGGTATGGGGAGTTGGAGACCAATCTCAGAG
TGACACGGGATGAGGCGTCCGGTGAGCGTCGACGGCACGCAAAGACCGCC
CAGCGGCTCCGCGAG back to top
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