mRNA_H-akashiwo_Contig1.182.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1.182.1
Unique NamemRNA_H-akashiwo_Contig1.182.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1.182.1 vs. uniprot
Match: A0A7S4DI63_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DI63_HETAK)

HSP 1 Score: 194 bits (494), Expect = 1.540e-62
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 1 
Query:    1 AAPHALAPAREVELTEEGTPRPQPLRVKAGAEGPSYLPKEGSLAVQGLVAAFLAQSNHAGTKNPGSSPADPRRTAPGDEIGNRNASEPVLNASEPVPATEA 303
            AAPHALAPAREVELTEEGTPRPQPLRVKAGAEGPSYLPKEGSLAVQGLVAAFLAQSNHAGTKNPGSSPADPRRTAPGDEIGNRNASEPVLNASEPVPATEA
Sbjct:    4 AAPHALAPAREVELTEEGTPRPQPLRVKAGAEGPSYLPKEGSLAVQGLVAAFLAQSNHAGTKNPGSSPADPRRTAPGDEIGNRNASEPVLNASEPVPATEA 104
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1.182.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S4DI63_HETAK1.540e-62100.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1contigH-akashiwo_Contig1:7682163..7682516 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size355
Hectar predicted targeting categoryother localisation
Exons1
Cds size354
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387032.740425-CDS-H-akashiwo_Contig1:7682162..76825161681387032.740425-CDS-H-akashiwo_Contig1:7682162..7682516Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1 7682163..7682516 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1.182.1prot_H-akashiwo_Contig1.182.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1 7682163..7682516 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1.182.1

>prot_H-akashiwo_Contig1.182.1 ID=prot_H-akashiwo_Contig1.182.1|Name=mRNA_H-akashiwo_Contig1.182.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=118bp
AAPHALAPAREVELTEEGTPRPQPLRVKAGAEGPSYLPKEGSLAVQGLVA
AFLAQSNHAGTKNPGSSPADPRRTAPGDEIGNRNASEPVLNASEPVPATE
AATAWDGVFPRMDYGPVT
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mRNA from alignment at H-akashiwo_Contig1:7682163..7682516+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1.182.1 ID=mRNA_H-akashiwo_Contig1.182.1|Name=mRNA_H-akashiwo_Contig1.182.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=354bp|location=Sequence derived from alignment at H-akashiwo_Contig1:7682163..7682516+ (Heterosigma akashiwo CCMP452)
GCCGCCCCGCACGCTCTCGCGCCTGCCCGGGAAGTGGAGTTGACGGAGGA
AGGGACACCACGACCCCAGCCTCTTAGGGTGAAGGCTGGTGCGGAGGGGC
CGTCTTACTTGCCCAAGGAGGGGTCCCTTGCCGTTCAAGGCTTGGTGGCG
GCCTTTCTTGCCCAGTCAAATCACGCTGGCACTAAAAATCCAGGGAGTTC
ACCAGCAGATCCCCGGCGGACGGCGCCTGGTGATGAGATCGGTAACAGGA
ATGCTTCAGAGCCAGTGCTTAATGCTTCAGAGCCAGTTCCCGCCACAGAG
GCGGCAACAGCCTGGGATGGGGTCTTCCCCCGCATGGACTACGGCCCCGT
CACG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1:7682163..7682516+

>mRNA_H-akashiwo_Contig1.182.1 ID=mRNA_H-akashiwo_Contig1.182.1|Name=mRNA_H-akashiwo_Contig1.182.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=354bp|location=Sequence derived from alignment at H-akashiwo_Contig1:7682163..7682516+ (Heterosigma akashiwo CCMP452)
GCCGCCCCGCACGCTCTCGCGCCTGCCCGGGAAGTGGAGTTGACGGAGGA
AGGGACACCACGACCCCAGCCTCTTAGGGTGAAGGCTGGTGCGGAGGGGC
CGTCTTACTTGCCCAAGGAGGGGTCCCTTGCCGTTCAAGGCTTGGTGGCG
GCCTTTCTTGCCCAGTCAAATCACGCTGGCACTAAAAATCCAGGGAGTTC
ACCAGCAGATCCCCGGCGGACGGCGCCTGGTGATGAGATCGGTAACAGGA
ATGCTTCAGAGCCAGTGCTTAATGCTTCAGAGCCAGTTCCCGCCACAGAG
GCGGCAACAGCCTGGGATGGGGTCTTCCCCCGCATGGACTACGGCCCCGT
CACG
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