mRNA_H-akashiwo_Contig1.181.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1.181.1
Unique NamemRNA_H-akashiwo_Contig1.181.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1.181.1 vs. uniprot
Match: F0VID2_NEOCL (Putative 2OG-Fe(II) oxygenase family protein n=2 Tax=Neospora caninum (strain Liverpool) TaxID=572307 RepID=F0VID2_NEOCL)

HSP 1 Score: 65.1 bits (157), Expect = 9.130e-11
Identity = 35/75 (46.67%), Postives = 44/75 (58.67%), Query Frame = 1
Query:    1 TVLYYLNPEWTPAEGGCLRLFHPDPAAXXXXXXGERHLDVGPRGDTLVVFRADKVEHAVRPTLAARGRMALTCWF 225
            T + YLN +W PA GGCLRL+  D             LDV PR   LVVFR++++EH+V P   A  R A+TCWF
Sbjct:  182 TAILYLNEDWKPACGGCLRLYLDD-----------CRLDVSPRLGKLVVFRSEQLEHSVMPVTCA-DRYAITCWF 244          
BLAST of mRNA_H-akashiwo_Contig1.181.1 vs. uniprot
Match: A0A7S2GGA1_9DINO (Hypothetical protein n=1 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A7S2GGA1_9DINO)

HSP 1 Score: 59.3 bits (142), Expect = 4.110e-9
Identity = 30/77 (38.96%), Postives = 44/77 (57.14%), Query Frame = 1
Query:    1 TVLYYLNPEWTPAEGGCLRLFHPDPAAXXXXXXGERHLDVGPRGDTLVVFRADKVEHAVRPTLAARGRMALTCWFHE 231
            T+ YY+N  W+   GG LRL+              RH+D+ P  D+LV+FR+D++ H VRP+     R ALT WF++
Sbjct:   96 TLTYYMNNRWSQEYGGQLRLW----------PGNNRHVDIWPEADSLVLFRSDEINHEVRPS--KERRRALTIWFNK 160          
BLAST of mRNA_H-akashiwo_Contig1.181.1 vs. uniprot
Match: A0A1G8XX02_9BACT (SM-20-related protein n=1 Tax=Catalinimonas alkaloidigena TaxID=1075417 RepID=A0A1G8XX02_9BACT)

HSP 1 Score: 59.3 bits (142), Expect = 7.340e-9
Identity = 34/76 (44.74%), Postives = 41/76 (53.95%), Query Frame = 1
Query:    7 LYYLNPEWTPAEGGCLRLFHPDPAAXXXXXXGERHLDVGPRGDTLVVFRADKVEHAVRPTLAARGRMALTCWFHED 234
            + YLNP WTPA+GG LR++  D         G  H DV P G TLV FR+  V H V P  A R R +LT W   +
Sbjct:  135 ILYLNPNWTPADGGQLRIYEAD---------GLGHTDVTPYGGTLVCFRSADVFHEVLP--AHRERFSLTGWLRTE 199          
BLAST of mRNA_H-akashiwo_Contig1.181.1 vs. uniprot
Match: A0A0U9HKK6_KLENI (Procollagen-lysine 5-dioxygenase n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A0U9HKK6_KLENI)

HSP 1 Score: 60.1 bits (144), Expect = 1.080e-8
Identity = 36/77 (46.75%), Postives = 45/77 (58.44%), Query Frame = 1
Query:    1 TVLYYLNPEWTPAEGGCLRLFHPDPAAXXXXXXGERHLDVGPRGDTLVVFRADKVEHAVRPTLAARGRMALTCWFHE 231
            TVLYYLNPEWTP +GG LRLF  D A+          +D+ P G  +V+F +  +EH V P  A R   A+T WF E
Sbjct:  209 TVLYYLNPEWTPNDGGQLRLFLKDGAS----------IDLPPMGGNVVLFESG-MEHEVLPAHAKR--FAVTAWFSE 272          
BLAST of mRNA_H-akashiwo_Contig1.181.1 vs. uniprot
Match: A0A1G3EAX8_9GAMM (2OG-Fe(II) oxygenase n=1 Tax=Pseudomonadales bacterium RIFCSPLOWO2_12_59_9 TaxID=1802009 RepID=A0A1G3EAX8_9GAMM)

HSP 1 Score: 58.2 bits (139), Expect = 2.080e-8
Identity = 33/75 (44.00%), Postives = 43/75 (57.33%), Query Frame = 1
Query:    1 TVLYYLNPEWTPAEGGCLRLFHPDPAAXXXXXXGERHLDVGPRGDTLVVFRADKVEHAVRPTLAARGRMALTCWF 225
            +V++YLNPEW P +GG LRL+              R LDV P+  TL+VF +    HAV P  A R R++LT WF
Sbjct:  136 SVVFYLNPEWLPEQGGALRLY----------LDAGRELDVYPQAGTLLVFMSADWPHAVLP--ANRERLSLTGWF 198          
BLAST of mRNA_H-akashiwo_Contig1.181.1 vs. uniprot
Match: A0A7S2UBF6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UBF6_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 2.410e-8
Identity = 34/82 (41.46%), Postives = 49/82 (59.76%), Query Frame = 1
Query:    1 TVLYYLNPEWTPAEGGCLRLFHPDPAAXXXXXXGE-RHLDVGPRGDTLVVFRADKVEHAVRPTLAARGRMALTCWFHEDLTA 243
            ++L YLN  W+P +GG LRL H D          E  +LDV PRG TLV+FR++++ H V  T A R  +A+  W++  +TA
Sbjct:  222 SLLLYLNENWSPEDGGKLRL-HMDSGGDELPAGEEPNYLDVEPRGGTLVLFRSEQLPHEVLDTKATR--LAIVGWYNRAMTA 300          
BLAST of mRNA_H-akashiwo_Contig1.181.1 vs. uniprot
Match: A0A0B4XML5_9GAMM (2OG-Fe(II) oxygenase family oxidoreductase n=2 Tax=Alcanivorax TaxID=59753 RepID=A0A0B4XML5_9GAMM)

HSP 1 Score: 58.2 bits (139), Expect = 2.630e-8
Identity = 32/78 (41.03%), Postives = 45/78 (57.69%), Query Frame = 1
Query:    1 TVLYYLNPEWTPAEGGCLRLFHPDPAAXXXXXXGERHLDVGPRGDTLVVFRADKVEHAVRPTLAARGRMALTCWFHED 234
            +V+ YLN  WTPA+GGCLRL+ P P A          LDV PR  +LV F ++++ H V P  A   R+++  WF  +
Sbjct:  144 SVVVYLNALWTPADGGCLRLW-PQPDAV------HHDLDVAPRAGSLVCFLSEQIPHEVLP--ARHDRLSIAGWFRRN 212          
BLAST of mRNA_H-akashiwo_Contig1.181.1 vs. uniprot
Match: A0A7S4QCF2_9DINO (Hypothetical protein (Fragment) n=2 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4QCF2_9DINO)

HSP 1 Score: 58.2 bits (139), Expect = 4.980e-8
Identity = 30/72 (41.67%), Postives = 44/72 (61.11%), Query Frame = 1
Query:    1 TVLYYLNPEWTPAEGGCLRLFHPDPAAXXXXXXGERHLDVGPRGDTLVVFRADKVEHAVRPTLAARGRMALT 216
            T++YY+NP W+   GG LRL+             +RH+D+ P  D+LV+FRAD++ H VR +   R R+ALT
Sbjct:  349 TLVYYMNPTWSQENGGALRLW----------PGRDRHVDIWPEADSLVLFRADEITHEVRNS--NRRRLALT 408          
BLAST of mRNA_H-akashiwo_Contig1.181.1 vs. uniprot
Match: A0A2D4CKD2_PYTIN (Prolyl 4-hydroxylase n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CKD2_PYTIN)

HSP 1 Score: 57.4 bits (137), Expect = 7.480e-8
Identity = 34/83 (40.96%), Postives = 44/83 (53.01%), Query Frame = 1
Query:    1 TVLYYLNPEWTPAEGGCLRLFHPDPAAXXXXXXGERHLDVGPRGDTLVVFRADKVEHAVRPT-----LAARGRMALTCWFHED 234
            T++YYLNP+W P++GG LRLF  D               V P+ DTL +F +D+V H V PT     L  + R ALT W   D
Sbjct:  184 TMVYYLNPDWAPSQGGELRLFTRDDGIKV----------VPPKADTLAMFWSDQVVHDVLPTVSDPTLKDQRRYALTLWLVTD 256          
BLAST of mRNA_H-akashiwo_Contig1.181.1 vs. uniprot
Match: A0A7R9VD70_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9VD70_9CHLO)

HSP 1 Score: 57.4 bits (137), Expect = 9.730e-8
Identity = 33/79 (41.77%), Postives = 42/79 (53.16%), Query Frame = 1
Query:    1 TVLYYLNPEWTPAEGGCLRLFHPDPAAXXXXXXGERHLDVGPRGDTLVVFRADKVEHAVRPTLAARGRMALTCWFHEDL 237
            T L YLN  WTPA+GGCLRLF            G++ +DV P G  L  F +  V H VRP  A R   + T W+++ L
Sbjct:  656 TCLCYLNKNWTPAKGGCLRLF----------VEGQQPVDVLPLGGRLAFFWSKTVAHEVRPAHAPRH--SFTLWYYDAL 722          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1.181.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
F0VID2_NEOCL9.130e-1146.67Putative 2OG-Fe(II) oxygenase family protein n=2 T... [more]
A0A7S2GGA1_9DINO4.110e-938.96Hypothetical protein n=1 Tax=Alexandrium andersoni... [more]
A0A1G8XX02_9BACT7.340e-944.74SM-20-related protein n=1 Tax=Catalinimonas alkalo... [more]
A0A0U9HKK6_KLENI1.080e-846.75Procollagen-lysine 5-dioxygenase n=1 Tax=Klebsormi... [more]
A0A1G3EAX8_9GAMM2.080e-844.002OG-Fe(II) oxygenase n=1 Tax=Pseudomonadales bacte... [more]
A0A7S2UBF6_9STRA2.410e-841.46Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
A0A0B4XML5_9GAMM2.630e-841.032OG-Fe(II) oxygenase family oxidoreductase n=2 Tax... [more]
A0A7S4QCF2_9DINO4.980e-841.67Hypothetical protein (Fragment) n=2 Tax=Alexandriu... [more]
A0A2D4CKD2_PYTIN7.480e-840.96Prolyl 4-hydroxylase n=2 Tax=Pythium insidiosum Ta... [more]
A0A7R9VD70_9CHLO9.730e-841.77Hypothetical protein n=1 Tax=Chlamydomonas euryale... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1contigH-akashiwo_Contig1:7681869..7682113 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog29176.XP_003883525.1
PFAMs2OG-FeII_Oxy_4
Model size245
Max annot lvl5794|Apicomplexa
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.5e-11
EggNOG OGsKOG3710@1|root,KOG3710@2759|Eukaryota,3YG5B@5794|Apicomplexa,3YKBC@5796|Coccidia,3YUV4@5809|Sarcocystidae
Description2OG-Fe(II) oxygenase family protein
Cds size243
COG categoryT
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387037.585415-CDS-H-akashiwo_Contig1:7681868..76821111681387037.585415-CDS-H-akashiwo_Contig1:7681868..7682111Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1 7681869..7682111 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1.181.1prot_H-akashiwo_Contig1.181.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1 7681869..7682111 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1.181.1

>prot_H-akashiwo_Contig1.181.1 ID=prot_H-akashiwo_Contig1.181.1|Name=mRNA_H-akashiwo_Contig1.181.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=81bp
TVLYYLNPEWTPAEGGCLRLFHPDPAAAAGGGGGERHLDVGPRGDTLVVF
RADKVEHAVRPTLAARGRMALTCWFHEDLTA
back to top

mRNA from alignment at H-akashiwo_Contig1:7681869..7682113+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1.181.1 ID=mRNA_H-akashiwo_Contig1.181.1|Name=mRNA_H-akashiwo_Contig1.181.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=245bp|location=Sequence derived from alignment at H-akashiwo_Contig1:7681869..7682113+ (Heterosigma akashiwo CCMP452)
ACCGTGCTGTACTACCTGAACCCCGAGTGGACCCCGGCCGAGGGAGGCTG CCTGCGCCTGTTCCACCCCGACCCCGCGGCGGCCGCGGGGGGCGGGGGCG GCGAGCGGCACCTGGACGTGGGGCCGCGGGGCGACACGCTGGTGGTCTTC CGGGCGGACAAGGTGGAGCACGCCGTGCGGCCCACGCTGGCCGCGCGCGG CCGGATGGCCCTGACCTGCTGGTTCCATGAAGACCTGACCGCCGC
back to top

Coding sequence (CDS) from alignment at H-akashiwo_Contig1:7681869..7682113+

>mRNA_H-akashiwo_Contig1.181.1 ID=mRNA_H-akashiwo_Contig1.181.1|Name=mRNA_H-akashiwo_Contig1.181.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=243bp|location=Sequence derived from alignment at H-akashiwo_Contig1:7681869..7682113+ (Heterosigma akashiwo CCMP452)
ACCGTGCTGTACTACCTGAACCCCGAGTGGACCCCGGCCGAGGGAGGCTG
CCTGCGCCTGTTCCACCCCGACCCCGCGGCGGCCGCGGGGGGCGGGGGCG
GCGAGCGGCACCTGGACGTGGGGCCGCGGGGCGACACGCTGGTGGTCTTC
CGGGCGGACAAGGTGGAGCACGCCGTGCGGCCCACGCTGGCCGCGCGCGG
CCGGATGGCCCTGACCTGCTGGTTCCATGAAGACCTGACCGCC
back to top