mRNA_H-akashiwo_Contig1.180.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1.180.1
Unique NamemRNA_H-akashiwo_Contig1.180.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1.180.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1contigH-akashiwo_Contig1:7681025..7681628 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1144275.COCOR_06949
PFAMs2OG-FeII_Oxy_3
Model size482
Max annot lvl28221|Deltaproteobacteria
KEGG koko:K07394
Hectar predicted targeting categoryother localisation
Exons2
Evalue0.000159
EggNOG OGsCOG3751@1|root,COG3751@2|Bacteria,1RD3H@1224|Proteobacteria,42VQT@68525|delta/epsilon subdivisions,2WRU5@28221|Deltaproteobacteria
DescriptionProlyl 4-hydroxylase alpha subunit homologues.
Cds size480
COG categoryO
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387031.428297-CDS-H-akashiwo_Contig1:7681024..76814681681387031.428297-CDS-H-akashiwo_Contig1:7681024..7681468Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1 7681025..7681468 +
1681387031.4398098-CDS-H-akashiwo_Contig1:7681592..76816281681387031.4398098-CDS-H-akashiwo_Contig1:7681592..7681628Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1 7681593..7681628 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1.180.1prot_H-akashiwo_Contig1.180.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1 7681025..7681628 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1.180.1

>prot_H-akashiwo_Contig1.180.1 ID=prot_H-akashiwo_Contig1.180.1|Name=mRNA_H-akashiwo_Contig1.180.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=160bp
MESSSPLAAGIPDKIQNSILSFMDFEGKELSLRHSAVQAATISARQPSAA
DRGKQNDGVDGEIQRCPSFNFTPIAPSEAFLISCEAQGCPNFFIRENFLG
ETACAALRAAGDRLKKAGRLQLGATGRGLTRRADSAVRGDLRTWVDPQEP
DLDPALRAFL
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mRNA from alignment at H-akashiwo_Contig1:7681025..7681628+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1.180.1 ID=mRNA_H-akashiwo_Contig1.180.1|Name=mRNA_H-akashiwo_Contig1.180.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=604bp|location=Sequence derived from alignment at H-akashiwo_Contig1:7681025..7681628+ (Heterosigma akashiwo CCMP452)
ATGGAGAGTTCGTCACCCCTTGCAGCTGGAATCCCGGATAAGATCCAGAA
CTCGATTTTGAGCTTCATGGACTTTGAAGGGAAGGAACTTTCGCTAAGAC
ACTCCGCAGTGCAGGCGGCAACAATATCGGCGAGGCAGCCTTCGGCCGCG
GATCGGGGGAAACAAAATGATGGCGTTGACGGCGAAATTCAACGCTGCCC
ATCGTTTAACTTCACACCGATTGCCCCGTCAGAAGCTTTCTTGATCTCCT
GCGAAGCGCAAGGATGCCCCAATTTCTTCATCAGAGAAAACTTCCTTGGC
GAAACAGCTTGCGCGGCACTTCGGGCTGCGGGTGACCGACTTAAGAAAGC
TGGTCGACTTCAGCTTGGGGCCACAGGTCGTGGGCTGACCCGGCGAGCGG
ACTCTGCCGTACGTGGAGACCTGCGTACCTGGGTGGATCCTCAGGTAATC
ATACATTCAAAGATGATTTCATGAGAAGGCCTTCATGTTTCACAATTTTC
TCCCTTTTTAAACTTGAAACTAACTTCCTTTTACAGTCGTCTTTTGTTCT
CCACTTGCAATTTCGCAGGAGCCTGATCTGGACCCCGCCCTGCGGGCCTT
CCTC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1:7681025..7681628+

>mRNA_H-akashiwo_Contig1.180.1 ID=mRNA_H-akashiwo_Contig1.180.1|Name=mRNA_H-akashiwo_Contig1.180.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=480bp|location=Sequence derived from alignment at H-akashiwo_Contig1:7681025..7681628+ (Heterosigma akashiwo CCMP452)
ATGGAGAGTTCGTCACCCCTTGCAGCTGGAATCCCGGATAAGATCCAGAA
CTCGATTTTGAGCTTCATGGACTTTGAAGGGAAGGAACTTTCGCTAAGAC
ACTCCGCAGTGCAGGCGGCAACAATATCGGCGAGGCAGCCTTCGGCCGCG
GATCGGGGGAAACAAAATGATGGCGTTGACGGCGAAATTCAACGCTGCCC
ATCGTTTAACTTCACACCGATTGCCCCGTCAGAAGCTTTCTTGATCTCCT
GCGAAGCGCAAGGATGCCCCAATTTCTTCATCAGAGAAAACTTCCTTGGC
GAAACAGCTTGCGCGGCACTTCGGGCTGCGGGTGACCGACTTAAGAAAGC
TGGTCGACTTCAGCTTGGGGCCACAGGTCGTGGGCTGACCCGGCGAGCGG
ACTCTGCCGTACGTGGAGACCTGCGTACCTGGGTGGATCCTCAGGAGCCT
GATCTGGACCCCGCCCTGCGGGCCTTCCTC
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